RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 U2AF2P26368 475 aaKnown RBP eCLIP16.11■□□□□ 0.17
SHKBP1-217ENST00000598558 ZNF200P98182 395 aaPredicted RBP16.11■□□□□ 0.17
SHKBP1-217ENST00000598558 SETQ01105 290 aaPredicted RBP16.11■□□□□ 0.17
SHKBP1-217ENST00000598558 KIAA0753Q2KHM9 967 aa16.11■□□□□ 0.17
SHKBP1-217ENST00000598558 PPP4R3AQ6IN85 833 aa16.11■□□□□ 0.17
SHKBP1-217ENST00000598558 B3GNT9Q6UX72 402 aa16.11■□□□□ 0.17
SHKBP1-217ENST00000598558 ABHD15Q6UXT9 468 aa16.11■□□□□ 0.17
SHKBP1-217ENST00000598558 SDF4Q9BRK5 362 aa16.11■□□□□ 0.17
SHKBP1-217ENST00000598558 FOXP1Q9H334 677 aaPredicted RBP16.11■□□□□ 0.17
SHKBP1-217ENST00000598558 RNPEPQ9H4A4 650 aa16.11■□□□□ 0.17
SHKBP1-217ENST00000598558 KCNMB3Q9NPA1 279 aa16.11■□□□□ 0.17
SHKBP1-217ENST00000598558 IGKV6D-21A0A0A0MT36 114 aa16.1■□□□□ 0.17
SHKBP1-217ENST00000598558 H3BRB1 525 aa16.1■□□□□ 0.17
SHKBP1-217ENST00000598558 LGR5O75473 907 aa16.1■□□□□ 0.17
SHKBP1-217ENST00000598558 ATP2B1P20020 1258 aa16.1■□□□□ 0.17
SHKBP1-217ENST00000598558 TOB1P50616 345 aaPredicted RBP16.1■□□□□ 0.17
SHKBP1-217ENST00000598558 NBR1Q14596 966 aa16.1■□□□□ 0.17
SHKBP1-217ENST00000598558 SAFBQ15424 915 aaKnown RBP eCLIP16.1■□□□□ 0.17
SHKBP1-217ENST00000598558 GDF6Q6KF10 455 aaPredicted RBP16.1■□□□□ 0.17
SHKBP1-217ENST00000598558 POTEDQ86YR6 584 aa16.1■□□□□ 0.17
SHKBP1-217ENST00000598558 UNC45AQ9H3U1 944 aa16.1■□□□□ 0.17
SHKBP1-217ENST00000598558 TUT1Q9H6E5 874 aaKnown RBP16.1■□□□□ 0.17
SHKBP1-217ENST00000598558 TBC1D22BQ9NU19 505 aa16.1■□□□□ 0.17
SHKBP1-217ENST00000598558 TBX21Q9UL17 535 aa16.1■□□□□ 0.17
SHKBP1-217ENST00000598558 NR2E3Q9Y5X4 410 aa16.1■□□□□ 0.17
SHKBP1-217ENST00000598558 DNAH12Q6ZR08 3092 aa16.1■□□□□ 0.17
SHKBP1-217ENST00000598558 MYH7BA7E2Y1 1941 aa16.09■□□□□ 0.17
SHKBP1-217ENST00000598558 DCDC2CA8MYV0 355 aa16.09■□□□□ 0.17
SHKBP1-217ENST00000598558 CLTBP09497 229 aa16.09■□□□□ 0.17
SHKBP1-217ENST00000598558 ATP4AP20648 1035 aa16.09■□□□□ 0.17
SHKBP1-217ENST00000598558 FAM47CQ5HY64 1035 aa16.09■□□□□ 0.17
SHKBP1-217ENST00000598558 LARP1BQ659C4 914 aaKnown RBP16.09■□□□□ 0.17
SHKBP1-217ENST00000598558 NFRKBQ6P4R8 1299 aa16.09■□□□□ 0.17
SHKBP1-217ENST00000598558 NOSTRINQ8IVI9 506 aa16.09■□□□□ 0.17
SHKBP1-217ENST00000598558 INTS4Q96HW7 963 aaKnown RBP16.09■□□□□ 0.17
SHKBP1-217ENST00000598558 RIT2Q99578 217 aa16.09■□□□□ 0.17
SHKBP1-217ENST00000598558 TMEM60Q9H2L4 133 aa16.09■□□□□ 0.17
SHKBP1-217ENST00000598558 DOCK5Q9H7D0 1870 aa16.08■□□□□ 0.17
SHKBP1-217ENST00000598558 KIAA0355O15063 1070 aa16.08■□□□□ 0.16
SHKBP1-217ENST00000598558 SUPT20HL2P0C7V6 817 aa16.08■□□□□ 0.16
SHKBP1-217ENST00000598558 CYP2C9P11712 490 aa16.08■□□□□ 0.16
SHKBP1-217ENST00000598558 GCFC2P16383 781 aaKnown RBP16.08■□□□□ 0.16
SHKBP1-217ENST00000598558 MARK3P27448 753 aa16.08■□□□□ 0.16
SHKBP1-217ENST00000598558 ZNF174Q15697 407 aa16.08■□□□□ 0.16
SHKBP1-217ENST00000598558 LRCH2Q5VUJ6 765 aa16.08■□□□□ 0.16
SHKBP1-217ENST00000598558 SESTD1Q86VW0 696 aa16.08■□□□□ 0.16
SHKBP1-217ENST00000598558 CCDC60Q8IWA6 550 aaPredicted RBP16.08■□□□□ 0.16
SHKBP1-217ENST00000598558 WNT8BQ93098 351 aa16.08■□□□□ 0.16
SHKBP1-217ENST00000598558 PRDM5Q9NQX1 630 aaPredicted RBP16.08■□□□□ 0.16
SHKBP1-217ENST00000598558 TMEM39AQ9NV64 488 aa16.08■□□□□ 0.16
SHKBP1-217ENST00000598558 GTF2IRD1Q9UHL9 959 aa16.08■□□□□ 0.16
SHKBP1-217ENST00000598558 UMODL1Q5DID0 1318 aa16.08■□□□□ 0.16
SHKBP1-217ENST00000598558 EML1O00423 815 aa16.07■□□□□ 0.16
SHKBP1-217ENST00000598558 GAS7O60861 476 aa16.07■□□□□ 0.16
SHKBP1-217ENST00000598558 SMIM10L2AP0DMW4 78 aa16.07■□□□□ 0.16
SHKBP1-217ENST00000598558 SMIM10L2BP0DMW5 78 aa16.07■□□□□ 0.16
SHKBP1-217ENST00000598558 HOXC8P31273 242 aa16.07■□□□□ 0.16
SHKBP1-217ENST00000598558 PTPN11Q06124 597 aaPredicted RBP16.07■□□□□ 0.16
SHKBP1-217ENST00000598558 ZNF746Q6NUN9 644 aaPredicted RBP16.07■□□□□ 0.16
SHKBP1-217ENST00000598558 SWSAP1Q6NVH7 229 aa16.07■□□□□ 0.16
SHKBP1-217ENST00000598558 C4orf32Q8N8J7 132 aa16.07■□□□□ 0.16
SHKBP1-217ENST00000598558 DHX38Q92620 1227 aaKnown RBP16.07■□□□□ 0.16
SHKBP1-217ENST00000598558 MTMR9Q96QG7 549 aa16.07■□□□□ 0.16
SHKBP1-217ENST00000598558 SETD4Q9NVD3 440 aa16.07■□□□□ 0.16
SHKBP1-217ENST00000598558 VAV3Q9UKW4 847 aa16.07■□□□□ 0.16
SHKBP1-217ENST00000598558 SCN10AQ9Y5Y9 1956 aa16.07■□□□□ 0.16
SHKBP1-217ENST00000598558 MROH7Q68CQ1 1323 aa16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 EMSYQ7Z589 1322 aa16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 CHMP2AO43633 222 aa16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 SYT1P21579 422 aa16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 MCM7P33993 719 aa16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 MAGEA10P43363 369 aaPredicted RBP16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 STAT5BP51692 787 aa16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 ADAM17P78536 824 aa16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 MDM2Q00987 491 aaPredicted RBP16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 KRT76Q01546 638 aa16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 PLCB4Q15147 1175 aa16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 UGCGQ16739 394 aa16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 MCTP1Q6DN14 999 aa16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 HSCBQ8IWL3 235 aa16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 C7orf31Q8N865 590 aa16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 SPRYD3Q8NCJ5 442 aa16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 GLG1Q92896 1179 aa16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 BADQ92934 168 aa16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 ZBTB10Q96DT7 871 aa16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 FAM20AQ96MK3 541 aa16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 GDF15Q99988 308 aa16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 KATNAL1Q9BW62 490 aa16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 TEKT3Q9BXF9 490 aa16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 SEZ6LQ9BYH1 1024 aa16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 SMARCAD1Q9H4L7 1026 aa16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 KIF3AQ9Y496 699 aa16.06■□□□□ 0.16
SHKBP1-217ENST00000598558 H3BQV1 296 aa16.05■□□□□ 0.16
SHKBP1-217ENST00000598558 TLR3O15455 904 aaKnown RBP16.05■□□□□ 0.16
SHKBP1-217ENST00000598558 TREHO43280 583 aa16.05■□□□□ 0.16
SHKBP1-217ENST00000598558 ZNF862O60290 1169 aa16.05■□□□□ 0.16
SHKBP1-217ENST00000598558 CYP2C18P33260 490 aa16.05■□□□□ 0.16
SHKBP1-217ENST00000598558 EPHB4P54760 987 aa16.05■□□□□ 0.16
SHKBP1-217ENST00000598558 SPIRE1Q08AE8 756 aa16.05■□□□□ 0.16
SHKBP1-217ENST00000598558 PTGISQ16647 500 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms