RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 DDX39AO00148 427 aaKnown RBP17.07■□□□□ 0.32
TRIM28-209ENST00000597423 EML1O00423 815 aa17.07■□□□□ 0.32
TRIM28-209ENST00000597423 PSAPP07602 524 aa17.07■□□□□ 0.32
TRIM28-209ENST00000597423 CCDC192P0DO97 292 aa17.07■□□□□ 0.32
TRIM28-209ENST00000597423 ZNF445P59923 1031 aa17.07■□□□□ 0.32
TRIM28-209ENST00000597423 SEMA3FQ13275 785 aa17.07■□□□□ 0.32
TRIM28-209ENST00000597423 GRB10Q13322 594 aa17.07■□□□□ 0.32
TRIM28-209ENST00000597423 POSTNQ15063 836 aa17.07■□□□□ 0.32
TRIM28-209ENST00000597423 TMEM119Q4V9L6 283 aa17.07■□□□□ 0.32
TRIM28-209ENST00000597423 IQSEC1Q6DN90 963 aa17.07■□□□□ 0.32
TRIM28-209ENST00000597423 MIS18BP1Q6P0N0 1132 aa17.07■□□□□ 0.32
TRIM28-209ENST00000597423 CATSPER3Q86XQ3 398 aa17.07■□□□□ 0.32
TRIM28-209ENST00000597423 TPH2Q8IWU9 490 aa17.07■□□□□ 0.32
TRIM28-209ENST00000597423 CCDC47Q96A33 483 aaKnown RBP17.07■□□□□ 0.32
TRIM28-209ENST00000597423 NACC1Q96RE7 527 aa17.07■□□□□ 0.32
TRIM28-209ENST00000597423 PLIN2Q99541 437 aa17.07■□□□□ 0.32
TRIM28-209ENST00000597423 ZSWIM4Q9H7M6 989 aa17.07■□□□□ 0.32
TRIM28-209ENST00000597423 KIAA1468Q9P260 1216 aa17.07■□□□□ 0.32
TRIM28-209ENST00000597423 DDX41Q9UJV9 622 aaKnown RBP17.07■□□□□ 0.32
TRIM28-209ENST00000597423 A0A087X0B3 334 aa17.06■□□□□ 0.32
TRIM28-209ENST00000597423 RBM47A0AV96 593 aaKnown RBP17.06■□□□□ 0.32
TRIM28-209ENST00000597423 SLITRK3O94933 977 aa17.06■□□□□ 0.32
TRIM28-209ENST00000597423 TXNP10599 105 aaKnown RBP17.06■□□□□ 0.32
TRIM28-209ENST00000597423 XRCC6P12956 609 aaKnown RBP eCLIP17.06■□□□□ 0.32
TRIM28-209ENST00000597423 CYP2B6P20813 491 aa17.06■□□□□ 0.32
TRIM28-209ENST00000597423 QARSP47897 775 aaKnown RBP17.06■□□□□ 0.32
TRIM28-209ENST00000597423 HTRA3P83110 453 aa17.06■□□□□ 0.32
TRIM28-209ENST00000597423 PDXDC2PQ6P474 469 aa17.06■□□□□ 0.32
TRIM28-209ENST00000597423 METTL7BQ6UX53 244 aa17.06■□□□□ 0.32
TRIM28-209ENST00000597423 RBM43Q6ZSC3 357 aaKnown RBP17.06■□□□□ 0.32
TRIM28-209ENST00000597423 DHX37Q8IY37 1157 aaKnown RBP17.06■□□□□ 0.32
TRIM28-209ENST00000597423 CKAP2LQ8IYA6 745 aa17.06■□□□□ 0.32
TRIM28-209ENST00000597423 NPLOC4Q8TAT6 608 aa17.06■□□□□ 0.32
TRIM28-209ENST00000597423 RAD54LQ92698 747 aa17.06■□□□□ 0.32
TRIM28-209ENST00000597423 ERO1AQ96HE7 468 aa17.06■□□□□ 0.32
TRIM28-209ENST00000597423 PNMA5Q96PV4 448 aa17.06■□□□□ 0.32
TRIM28-209ENST00000597423 GTPBP4Q9BZE4 634 aaKnown RBP17.06■□□□□ 0.32
TRIM28-209ENST00000597423 GPR25O00155 361 aa17.05■□□□□ 0.32
TRIM28-209ENST00000597423 NKRFO15226 690 aaKnown RBP eCLIP17.05■□□□□ 0.32
TRIM28-209ENST00000597423 GTPBP6O43824 516 aaPredicted RBP17.05■□□□□ 0.32
TRIM28-209ENST00000597423 MED24O75448 989 aa17.05■□□□□ 0.32
TRIM28-209ENST00000597423 ECM2O94769 699 aaPredicted RBP17.05■□□□□ 0.32
TRIM28-209ENST00000597423 SNAI1O95863 264 aaPredicted RBP17.05■□□□□ 0.32
TRIM28-209ENST00000597423 SPATA31C1P0DKV0 1188 aa17.05■□□□□ 0.32
TRIM28-209ENST00000597423 AFMP43652 599 aa17.05■□□□□ 0.32
TRIM28-209ENST00000597423 C1QTNF8P60827 252 aa17.05■□□□□ 0.32
TRIM28-209ENST00000597423 PSMC5P62195 406 aa17.05■□□□□ 0.32
TRIM28-209ENST00000597423 MDM2Q00987 491 aaPredicted RBP17.05■□□□□ 0.32
TRIM28-209ENST00000597423 ACVR2BQ13705 512 aa17.05■□□□□ 0.32
TRIM28-209ENST00000597423 LAMC2Q13753 1193 aa17.05■□□□□ 0.32
TRIM28-209ENST00000597423 CYFIP1Q7L576 1253 aa17.05■□□□□ 0.32
TRIM28-209ENST00000597423 SH3RF1Q7Z6J0 888 aa17.05■□□□□ 0.32
TRIM28-209ENST00000597423 FBXO16Q8IX29 292 aaPredicted RBP17.05■□□□□ 0.32
TRIM28-209ENST00000597423 LARP4BQ92615 738 aaKnown RBP17.05■□□□□ 0.32
TRIM28-209ENST00000597423 ATP6V0A1Q93050 837 aa17.05■□□□□ 0.32
TRIM28-209ENST00000597423 SMARCE1Q969G3 411 aa17.05■□□□□ 0.32
TRIM28-209ENST00000597423 DYDC2Q96IM9 177 aa17.05■□□□□ 0.32
TRIM28-209ENST00000597423 TRIM47Q96LD4 638 aa17.05■□□□□ 0.32
TRIM28-209ENST00000597423 KBTBD4Q9NVX7 518 aa17.05■□□□□ 0.32
TRIM28-209ENST00000597423 NRBP1Q9UHY1 535 aa17.05■□□□□ 0.32
TRIM28-209ENST00000597423 FKTNO75072 461 aa17.04■□□□□ 0.32
TRIM28-209ENST00000597423 GGPS1O95749 300 aa17.04■□□□□ 0.32
TRIM28-209ENST00000597423 UBA1P22314 1058 aaKnown RBP17.04■□□□□ 0.32
TRIM28-209ENST00000597423 ACTR2P61160 394 aa17.04■□□□□ 0.32
TRIM28-209ENST00000597423 SP2Q02086 613 aa17.04■□□□□ 0.32
TRIM28-209ENST00000597423 CELF3Q5SZQ8 465 aaKnown RBP17.04■□□□□ 0.32
TRIM28-209ENST00000597423 MFSD14CQ5VZR4 134 aa17.04■□□□□ 0.32
TRIM28-209ENST00000597423 TAPT1Q6NXT6 567 aa17.04■□□□□ 0.32
TRIM28-209ENST00000597423 CCDC62Q6P9F0 684 aa17.04■□□□□ 0.32
TRIM28-209ENST00000597423 LRSAM1Q6UWE0 723 aa17.04■□□□□ 0.32
TRIM28-209ENST00000597423 SEPT1Q8WYJ6 367 aa17.04■□□□□ 0.32
TRIM28-209ENST00000597423 RMND1Q9NWS8 449 aa17.04■□□□□ 0.32
TRIM28-209ENST00000597423 RGL1Q9NZL6 768 aa17.04■□□□□ 0.32
TRIM28-209ENST00000597423 POTEB3A0JP26 581 aa17.03■□□□□ 0.32
TRIM28-209ENST00000597423 NOP56O00567 594 aaKnown RBP17.03■□□□□ 0.32
TRIM28-209ENST00000597423 LYPLA2O95372 231 aa17.03■□□□□ 0.32
TRIM28-209ENST00000597423 EYA4O95677 639 aa17.03■□□□□ 0.32
TRIM28-209ENST00000597423 CAVIN2O95810 425 aa17.03■□□□□ 0.32
TRIM28-209ENST00000597423 CCNE2O96020 404 aa17.03■□□□□ 0.32
TRIM28-209ENST00000597423 GH1P01241 217 aa17.03■□□□□ 0.32
TRIM28-209ENST00000597423 PLA2G4BP0C869 781 aa17.03■□□□□ 0.32
TRIM28-209ENST00000597423 CYP4A11Q02928 519 aa17.03■□□□□ 0.32
TRIM28-209ENST00000597423 CTTNQ14247 550 aaKnown RBP17.03■□□□□ 0.32
TRIM28-209ENST00000597423 LY6KQ17RY6 165 aa17.03■□□□□ 0.32
TRIM28-209ENST00000597423 NAALADL2Q58DX5 795 aa17.03■□□□□ 0.32
TRIM28-209ENST00000597423 FAM160B1Q5W0V3 765 aa17.03■□□□□ 0.32
TRIM28-209ENST00000597423 POTEBQ6S5H4 581 aa17.03■□□□□ 0.32
TRIM28-209ENST00000597423 OTUD6AQ7L8S5 288 aa17.03■□□□□ 0.32
TRIM28-209ENST00000597423 GSDMAQ96QA5 445 aa17.03■□□□□ 0.32
TRIM28-209ENST00000597423 C7orf25Q9BPX7 421 aa17.03■□□□□ 0.32
TRIM28-209ENST00000597423 TSPY26PQ9H489 355 aa17.03■□□□□ 0.32
TRIM28-209ENST00000597423 ANO10Q9NW15 660 aa17.03■□□□□ 0.32
TRIM28-209ENST00000597423 ZHX1Q9UKY1 873 aaPredicted RBP17.03■□□□□ 0.32
TRIM28-209ENST00000597423 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.02■□□□□ 0.32
TRIM28-209ENST00000597423 POTEFA5A3E0 1075 aa17.02■□□□□ 0.32
TRIM28-209ENST00000597423 BACH1O14867 736 aa17.02■□□□□ 0.32
TRIM28-209ENST00000597423 FARP2O94887 1054 aaPredicted RBP17.02■□□□□ 0.32
TRIM28-209ENST00000597423 ATG7O95352 703 aa17.02■□□□□ 0.32
TRIM28-209ENST00000597423 SSBP05455 408 aaKnown RBP eCLIP17.02■□□□□ 0.32
TRIM28-209ENST00000597423 SUPT20HL2P0C7V6 817 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms