RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 MIER3Q7Z3K6 550 aa16.53■□□□□ 0.24
SHKBP1-211ENST00000595945 CATSPER3Q86XQ3 398 aa16.53■□□□□ 0.24
SHKBP1-211ENST00000595945 GRAMD1CQ8IYS0 662 aa16.53■□□□□ 0.24
SHKBP1-211ENST00000595945 RASSF8Q8NHQ8 419 aa16.53■□□□□ 0.24
SHKBP1-211ENST00000595945 SPATA20Q8TB22 786 aa16.53■□□□□ 0.24
SHKBP1-211ENST00000595945 NEK9Q8TD19 979 aa16.53■□□□□ 0.24
SHKBP1-211ENST00000595945 RAD54LQ92698 747 aa16.53■□□□□ 0.24
SHKBP1-211ENST00000595945 CDK5RAP3Q96JB5 506 aa16.53■□□□□ 0.24
SHKBP1-211ENST00000595945 BCAS3Q9H6U6 928 aa16.53■□□□□ 0.24
SHKBP1-211ENST00000595945 VTA1Q9NP79 307 aa16.53■□□□□ 0.24
SHKBP1-211ENST00000595945 RNF186Q9NXI6 227 aa16.53■□□□□ 0.24
SHKBP1-211ENST00000595945 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.53■□□□□ 0.24
SHKBP1-211ENST00000595945 SLC5A4Q9NY91 659 aa16.53■□□□□ 0.24
SHKBP1-211ENST00000595945 KIAA1468Q9P260 1216 aa16.53■□□□□ 0.24
SHKBP1-211ENST00000595945 ARID2Q68CP9 1835 aa16.52■□□□□ 0.24
SHKBP1-211ENST00000595945 MYH11P35749 1972 aa16.52■□□□□ 0.24
SHKBP1-211ENST00000595945 GTPBP6O43824 516 aaPredicted RBP16.52■□□□□ 0.24
SHKBP1-211ENST00000595945 SLITRK3O94933 977 aa16.52■□□□□ 0.24
SHKBP1-211ENST00000595945 ARIH2O95376 493 aa16.52■□□□□ 0.24
SHKBP1-211ENST00000595945 TBC1D8O95759 1140 aa16.52■□□□□ 0.24
SHKBP1-211ENST00000595945 UBA1P22314 1058 aaKnown RBP16.52■□□□□ 0.24
SHKBP1-211ENST00000595945 SFNP31947 248 aa16.52■□□□□ 0.24
SHKBP1-211ENST00000595945 ZRSR1Q15695 479 aaKnown RBP16.52■□□□□ 0.24
SHKBP1-211ENST00000595945 NT5DC1Q5TFE4 455 aa16.52■□□□□ 0.24
SHKBP1-211ENST00000595945 TAPT1Q6NXT6 567 aa16.52■□□□□ 0.24
SHKBP1-211ENST00000595945 FBXO16Q8IX29 292 aaPredicted RBP16.52■□□□□ 0.24
SHKBP1-211ENST00000595945 SOCS4Q8WXH5 440 aa16.52■□□□□ 0.24
SHKBP1-211ENST00000595945 DYDC2Q96IM9 177 aa16.52■□□□□ 0.24
SHKBP1-211ENST00000595945 TINF2Q9BSI4 451 aa16.52■□□□□ 0.24
SHKBP1-211ENST00000595945 HOOK1Q9UJC3 728 aaKnown RBP16.52■□□□□ 0.24
SHKBP1-211ENST00000595945 DDX41Q9UJV9 622 aaKnown RBP16.52■□□□□ 0.24
SHKBP1-211ENST00000595945 WDR64B1ANS9 1081 aa16.51■□□□□ 0.23
SHKBP1-211ENST00000595945 TNPO2O14787 897 aaKnown RBP16.51■□□□□ 0.23
SHKBP1-211ENST00000595945 RGS2P41220 211 aa16.51■□□□□ 0.23
SHKBP1-211ENST00000595945 SARSP49591 514 aaKnown RBP16.51■□□□□ 0.23
SHKBP1-211ENST00000595945 FCGRTP55899 365 aa16.51■□□□□ 0.23
SHKBP1-211ENST00000595945 DPYDQ12882 1025 aa16.51■□□□□ 0.23
SHKBP1-211ENST00000595945 IRF5Q13568 498 aa16.51■□□□□ 0.23
SHKBP1-211ENST00000595945 NEDD9Q14511 834 aa16.51■□□□□ 0.23
SHKBP1-211ENST00000595945 EEPD1Q7L9B9 569 aa16.51■□□□□ 0.23
SHKBP1-211ENST00000595945 GAS2L3Q86XJ1 694 aa16.51■□□□□ 0.23
SHKBP1-211ENST00000595945 GIMAP8Q8ND71 665 aaPredicted RBP16.51■□□□□ 0.23
SHKBP1-211ENST00000595945 ERCC4Q92889 916 aaPredicted RBP16.51■□□□□ 0.23
SHKBP1-211ENST00000595945 CCDC34Q96HJ3 373 aa16.51■□□□□ 0.23
SHKBP1-211ENST00000595945 TRIM47Q96LD4 638 aa16.51■□□□□ 0.23
SHKBP1-211ENST00000595945 JPH1Q9HDC5 661 aaPredicted RBP16.51■□□□□ 0.23
SHKBP1-211ENST00000595945 RGL1Q9NZL6 768 aa16.51■□□□□ 0.23
SHKBP1-211ENST00000595945 SLC9A2Q9UBY0 812 aa16.51■□□□□ 0.23
SHKBP1-211ENST00000595945 KIAA1024Q9UPX6 916 aa16.51■□□□□ 0.23
SHKBP1-211ENST00000595945 PCDHA5Q9Y5H7 936 aa16.51■□□□□ 0.23
SHKBP1-211ENST00000595945 POTEFA5A3E0 1075 aa16.5■□□□□ 0.23
SHKBP1-211ENST00000595945 FARP2O94887 1054 aaPredicted RBP16.5■□□□□ 0.23
SHKBP1-211ENST00000595945 ATG7O95352 703 aa16.5■□□□□ 0.23
SHKBP1-211ENST00000595945 LYPLA2O95372 231 aa16.5■□□□□ 0.23
SHKBP1-211ENST00000595945 MYL1P05976 194 aa16.5■□□□□ 0.23
SHKBP1-211ENST00000595945 P4HBP07237 508 aaKnown RBP16.5■□□□□ 0.23
SHKBP1-211ENST00000595945 AFMP43652 599 aa16.5■□□□□ 0.23
SHKBP1-211ENST00000595945 PSMC4P43686 418 aa16.5■□□□□ 0.23
SHKBP1-211ENST00000595945 CTTNQ14247 550 aaKnown RBP16.5■□□□□ 0.23
SHKBP1-211ENST00000595945 MCM6Q14566 821 aa16.5■□□□□ 0.23
SHKBP1-211ENST00000595945 OLFML2BQ68BL8 750 aa16.5■□□□□ 0.23
SHKBP1-211ENST00000595945 CNNM4Q6P4Q7 775 aa16.5■□□□□ 0.23
SHKBP1-211ENST00000595945 POTEGQ6S5H5 508 aa16.5■□□□□ 0.23
SHKBP1-211ENST00000595945 SMAP1Q8IYB5 467 aaPredicted RBP16.5■□□□□ 0.23
SHKBP1-211ENST00000595945 LARP4BQ92615 738 aaKnown RBP16.5■□□□□ 0.23
SHKBP1-211ENST00000595945 APBA2Q99767 749 aa16.5■□□□□ 0.23
SHKBP1-211ENST00000595945 ARHGAP39Q9C0H5 1083 aa16.5■□□□□ 0.23
SHKBP1-211ENST00000595945 PDGFCQ9NRA1 345 aa16.5■□□□□ 0.23
SHKBP1-211ENST00000595945 FLRT1Q9NZU1 646 aa16.5■□□□□ 0.23
SHKBP1-211ENST00000595945 WRAP73Q9P2S5 460 aaPredicted RBP16.5■□□□□ 0.23
SHKBP1-211ENST00000595945 E9PMD0 336 aa16.49■□□□□ 0.23
SHKBP1-211ENST00000595945 TRPA1O75762 1119 aa16.49■□□□□ 0.23
SHKBP1-211ENST00000595945 ACTR2P61160 394 aa16.49■□□□□ 0.23
SHKBP1-211ENST00000595945 PSMC6P62333 389 aa16.49■□□□□ 0.23
SHKBP1-211ENST00000595945 CAP1Q01518 475 aa16.49■□□□□ 0.23
SHKBP1-211ENST00000595945 SP3Q02447 781 aa16.49■□□□□ 0.23
SHKBP1-211ENST00000595945 CYP4A11Q02928 519 aa16.49■□□□□ 0.23
SHKBP1-211ENST00000595945 TYRO3Q06418 890 aa16.49■□□□□ 0.23
SHKBP1-211ENST00000595945 METTL7BQ6UX53 244 aa16.49■□□□□ 0.23
SHKBP1-211ENST00000595945 ABHD15Q6UXT9 468 aa16.49■□□□□ 0.23
SHKBP1-211ENST00000595945 SV2BQ7L1I2 683 aa16.49■□□□□ 0.23
SHKBP1-211ENST00000595945 CYFIP1Q7L576 1253 aa16.49■□□□□ 0.23
SHKBP1-211ENST00000595945 SCFD2Q8WU76 684 aa16.49■□□□□ 0.23
SHKBP1-211ENST00000595945 STAMQ92783 540 aa16.49■□□□□ 0.23
SHKBP1-211ENST00000595945 C7orf25Q9BPX7 421 aa16.49■□□□□ 0.23
SHKBP1-211ENST00000595945 TCEAL9Q9UHQ7 104 aa16.49■□□□□ 0.23
SHKBP1-211ENST00000595945 TELO2Q9Y4R8 837 aa16.49■□□□□ 0.23
SHKBP1-211ENST00000595945 PCDHA10Q9Y5I2 948 aa16.49■□□□□ 0.23
SHKBP1-211ENST00000595945 ECM2O94769 699 aaPredicted RBP16.48■□□□□ 0.23
SHKBP1-211ENST00000595945 EYA4O95677 639 aa16.48■□□□□ 0.23
SHKBP1-211ENST00000595945 GGPS1O95749 300 aa16.48■□□□□ 0.23
SHKBP1-211ENST00000595945 PLA2G4BP0C869 781 aa16.48■□□□□ 0.23
SHKBP1-211ENST00000595945 CCDC192P0DO97 292 aa16.48■□□□□ 0.23
SHKBP1-211ENST00000595945 XRCC5P13010 732 aaKnown RBP16.48■□□□□ 0.23
SHKBP1-211ENST00000595945 CASP1P29466 404 aa16.48■□□□□ 0.23
SHKBP1-211ENST00000595945 CUL4BQ13620 913 aa16.48■□□□□ 0.23
SHKBP1-211ENST00000595945 TTLL4Q14679 1199 aa16.48■□□□□ 0.23
SHKBP1-211ENST00000595945 LY6KQ17RY6 165 aa16.48■□□□□ 0.23
SHKBP1-211ENST00000595945 CELF3Q5SZQ8 465 aaKnown RBP16.48■□□□□ 0.23
SHKBP1-211ENST00000595945 SASS6Q6UVJ0 657 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms