RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 MICAL3Q7RTP6 2002 aa14.35□□□□□ -0.11
UPF1-203ENST00000594504 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.34□□□□□ -0.11
UPF1-203ENST00000594504 PIK3CDO00329 1044 aa14.34□□□□□ -0.11
UPF1-203ENST00000594504 EFCAB14O75071 495 aa14.34□□□□□ -0.11
UPF1-203ENST00000594504 AMHP03971 560 aa14.34□□□□□ -0.11
UPF1-203ENST00000594504 SMARCA1P28370 1054 aa14.34□□□□□ -0.11
UPF1-203ENST00000594504 ADAM17P78536 824 aa14.34□□□□□ -0.11
UPF1-203ENST00000594504 ARHGAP4P98171 946 aa14.34□□□□□ -0.11
UPF1-203ENST00000594504 UBE2SQ16763 222 aa14.34□□□□□ -0.11
UPF1-203ENST00000594504 BLOC1S2Q6QNY1 142 aa14.34□□□□□ -0.11
UPF1-203ENST00000594504 NLRX1Q86UT6 975 aa14.34□□□□□ -0.11
UPF1-203ENST00000594504 SGMS1Q86VZ5 419 aa14.34□□□□□ -0.11
UPF1-203ENST00000594504 SEC63Q9UGP8 760 aaKnown RBP14.34□□□□□ -0.11
UPF1-203ENST00000594504 COG5Q9UP83 839 aa14.34□□□□□ -0.11
UPF1-203ENST00000594504 INSL6Q9Y581 213 aa14.34□□□□□ -0.11
UPF1-203ENST00000594504 EMSYQ7Z589 1322 aa14.34□□□□□ -0.11
UPF1-203ENST00000594504 SIP14410 1827 aa14.34□□□□□ -0.11
UPF1-203ENST00000594504 SPTBN5Q9NRC6 3674 aaKnown RBP14.34□□□□□ -0.11
UPF1-203ENST00000594504 GSTTP1A0A1W2PQM5 241 aa14.33□□□□□ -0.12
UPF1-203ENST00000594504 CALM1P0DP23 149 aa14.33□□□□□ -0.12
UPF1-203ENST00000594504 CALM2P0DP24 149 aa14.33□□□□□ -0.12
UPF1-203ENST00000594504 CALM3P0DP25 149 aa14.33□□□□□ -0.12
UPF1-203ENST00000594504 ITGB5P18084 799 aa14.33□□□□□ -0.12
UPF1-203ENST00000594504 TCF7P36402 384 aaPredicted RBP14.33□□□□□ -0.12
UPF1-203ENST00000594504 HTRA4P83105 476 aaPredicted RBP14.33□□□□□ -0.12
UPF1-203ENST00000594504 RUFY4Q6ZNE9 571 aa14.33□□□□□ -0.12
UPF1-203ENST00000594504 LMBR1Q8WVP7 490 aa14.33□□□□□ -0.12
UPF1-203ENST00000594504 SEPT8Q92599 483 aa14.33□□□□□ -0.12
UPF1-203ENST00000594504 TCEANC2Q96MN5 208 aa14.33□□□□□ -0.12
UPF1-203ENST00000594504 SENP7Q9BQF6 1050 aa14.33□□□□□ -0.12
UPF1-203ENST00000594504 LZTS2Q9BRK4 669 aa14.33□□□□□ -0.12
UPF1-203ENST00000594504 PSTPIP2Q9H939 334 aa14.33□□□□□ -0.12
UPF1-203ENST00000594504 SLC12A7Q9Y666 1083 aa14.33□□□□□ -0.12
UPF1-203ENST00000594504 CHD9Q3L8U1 2897 aa14.32□□□□□ -0.12
UPF1-203ENST00000594504 CHRNA1P02708 482 aa14.32□□□□□ -0.12
UPF1-203ENST00000594504 KCNA2P16389 499 aa14.32□□□□□ -0.12
UPF1-203ENST00000594504 MARK3P27448 753 aa14.32□□□□□ -0.12
UPF1-203ENST00000594504 GNAQP50148 359 aa14.32□□□□□ -0.12
UPF1-203ENST00000594504 FGD1P98174 961 aa14.32□□□□□ -0.12
UPF1-203ENST00000594504 C8orf34Q49A92 452 aa14.32□□□□□ -0.12
UPF1-203ENST00000594504 SYNE3Q6ZMZ3 975 aa14.32□□□□□ -0.12
UPF1-203ENST00000594504 FANCBQ8NB91 859 aa14.32□□□□□ -0.12
UPF1-203ENST00000594504 FBXO22Q8NEZ5 403 aa14.32□□□□□ -0.12
UPF1-203ENST00000594504 TOP1MTQ969P6 601 aa14.32□□□□□ -0.12
UPF1-203ENST00000594504 ZBTB10Q96DT7 871 aa14.32□□□□□ -0.12
UPF1-203ENST00000594504 EPHX3Q9H6B9 360 aa14.32□□□□□ -0.12
UPF1-203ENST00000594504 LMCD1Q9NZU5 365 aa14.32□□□□□ -0.12
UPF1-203ENST00000594504 PCDHA6Q9UN73 950 aa14.32□□□□□ -0.12
UPF1-203ENST00000594504 PCDHA8Q9Y5H6 950 aa14.32□□□□□ -0.12
UPF1-203ENST00000594504 KAT6AQ92794 2004 aa14.32□□□□□ -0.12
UPF1-203ENST00000594504 GNAT1P11488 350 aa14.31□□□□□ -0.12
UPF1-203ENST00000594504 CPA1P15085 419 aa14.31□□□□□ -0.12
UPF1-203ENST00000594504 RPS6KB1P23443 525 aa14.31□□□□□ -0.12
UPF1-203ENST00000594504 ANAPC15P60006 121 aa14.31□□□□□ -0.12
UPF1-203ENST00000594504 FAM26DQ5JW98 314 aa14.31□□□□□ -0.12
UPF1-203ENST00000594504 XRRA1Q6P2D8 792 aa14.31□□□□□ -0.12
UPF1-203ENST00000594504 FBXL16Q8N461 479 aa14.31□□□□□ -0.12
UPF1-203ENST00000594504 SEPT1Q8WYJ6 367 aa14.31□□□□□ -0.12
UPF1-203ENST00000594504 PGBD1Q96JS3 809 aa14.31□□□□□ -0.12
UPF1-203ENST00000594504 TM6SF1Q9BZW5 370 aa14.31□□□□□ -0.12
UPF1-203ENST00000594504 ZSWIM6Q9HCJ5 1215 aa14.31□□□□□ -0.12
UPF1-203ENST00000594504 ZNF215Q9UL58 517 aaPredicted RBP14.31□□□□□ -0.12
UPF1-203ENST00000594504 UBIAD1Q9Y5Z9 338 aa14.31□□□□□ -0.12
UPF1-203ENST00000594504 CHD7Q9P2D1 2997 aa14.31□□□□□ -0.12
UPF1-203ENST00000594504 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.3□□□□□ -0.12
UPF1-203ENST00000594504 RCAN1P53805 252 aa14.3□□□□□ -0.12
UPF1-203ENST00000594504 EPC2Q52LR7 807 aa14.3□□□□□ -0.12
UPF1-203ENST00000594504 APOA5Q6Q788 366 aa14.3□□□□□ -0.12
UPF1-203ENST00000594504 TMTC3Q6ZXV5 915 aa14.3□□□□□ -0.12
UPF1-203ENST00000594504 RUFY3Q7L099 469 aa14.3□□□□□ -0.12
UPF1-203ENST00000594504 HEATR3Q7Z4Q2 680 aa14.3□□□□□ -0.12
UPF1-203ENST00000594504 MICU3Q86XE3 530 aa14.3□□□□□ -0.12
UPF1-203ENST00000594504 SP7Q8TDD2 431 aaPredicted RBP14.3□□□□□ -0.12
UPF1-203ENST00000594504 KHSRPQ92945 711 aaKnown RBP eCLIP14.3□□□□□ -0.12
UPF1-203ENST00000594504 GPRASP2Q96D09 838 aa14.3□□□□□ -0.12
UPF1-203ENST00000594504 YME1L1Q96TA2 773 aa14.3□□□□□ -0.12
UPF1-203ENST00000594504 CYP46A1Q9Y6A2 500 aa14.3□□□□□ -0.12
UPF1-203ENST00000594504 CAND2O75155 1236 aa14.29□□□□□ -0.12
UPF1-203ENST00000594504 SEC24BO95487 1268 aa14.29□□□□□ -0.12
UPF1-203ENST00000594504 GHRP10912 638 aa14.29□□□□□ -0.12
UPF1-203ENST00000594504 IGBP1P78318 339 aa14.29□□□□□ -0.12
UPF1-203ENST00000594504 MTMR1Q13613 665 aa14.29□□□□□ -0.12
UPF1-203ENST00000594504 GRIK4Q16099 956 aa14.29□□□□□ -0.12
UPF1-203ENST00000594504 MARCH8Q5T0T0 291 aa14.29□□□□□ -0.12
UPF1-203ENST00000594504 TYW1BQ6NUM6 668 aa14.29□□□□□ -0.12
UPF1-203ENST00000594504 Q6ZUG5 572 aa14.29□□□□□ -0.12
UPF1-203ENST00000594504 TMEM192Q8IY95 271 aa14.29□□□□□ -0.12
UPF1-203ENST00000594504 GIMAP8Q8ND71 665 aaPredicted RBP14.29□□□□□ -0.12
UPF1-203ENST00000594504 CYP2W1Q8TAV3 490 aa14.29□□□□□ -0.12
UPF1-203ENST00000594504 DNAJB3Q8WWF6 145 aa14.29□□□□□ -0.12
UPF1-203ENST00000594504 GLG1Q92896 1179 aa14.29□□□□□ -0.12
UPF1-203ENST00000594504 PCYT2Q99447 389 aa14.29□□□□□ -0.12
UPF1-203ENST00000594504 AGXT2Q9BYV1 514 aa14.29□□□□□ -0.12
UPF1-203ENST00000594504 IFIH1Q9BYX4 1025 aaKnown RBP14.29□□□□□ -0.12
UPF1-203ENST00000594504 UBE2ZQ9H832 354 aaPredicted RBP14.29□□□□□ -0.12
UPF1-203ENST00000594504 CD320Q9NPF0 282 aa14.29□□□□□ -0.12
UPF1-203ENST00000594504 JADE2Q9NQC1 790 aa14.29□□□□□ -0.12
UPF1-203ENST00000594504 BRPF3Q9ULD4 1205 aa14.29□□□□□ -0.12
UPF1-203ENST00000594504 NRCAMQ92823 1304 aa14.29□□□□□ -0.12
UPF1-203ENST00000594504 KLF18A0A0U1RQI7 1052 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms