RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 PEX3P56589 373 aa10.8□□□□□ -0.68
LIG3-216ENST00000593099 KIF5AQ12840 1032 aa10.8□□□□□ -0.68
LIG3-216ENST00000593099 PSMD2Q13200 908 aa10.8□□□□□ -0.68
LIG3-216ENST00000593099 MORC3Q14149 939 aa10.8□□□□□ -0.68
LIG3-216ENST00000593099 LEKR1Q6ZMV7 388 aa10.8□□□□□ -0.68
LIG3-216ENST00000593099 ZSCAN30Q86W11 494 aa10.8□□□□□ -0.68
LIG3-216ENST00000593099 GBP3Q9H0R5 595 aa10.8□□□□□ -0.68
LIG3-216ENST00000593099 ASCC2Q9H1I8 757 aaPredicted RBP10.8□□□□□ -0.68
LIG3-216ENST00000593099 SMARCAD1Q9H4L7 1026 aa10.8□□□□□ -0.68
LIG3-216ENST00000593099 CBX8Q9HC52 389 aa10.8□□□□□ -0.68
LIG3-216ENST00000593099 TBX3O15119 743 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 TRPA1O75762 1119 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 CASQ1P31415 396 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 KCNB2Q92953 911 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 DHTKD1Q96HY7 919 aaPredicted RBP10.79□□□□□ -0.68
LIG3-216ENST00000593099 CHAMP1Q96JM3 812 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 TAAR1Q96RJ0 339 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 LXNQ9BS40 222 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 EFCC1Q9HA90 598 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 FZD1Q9UP38 647 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 LTBP3Q9NS15 1303 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 TMEM88BA6NKF7 163 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 AKR1B15C9JRZ8 316 aaPredicted RBP10.79□□□□□ -0.68
LIG3-216ENST00000593099 MAPK6Q16659 721 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 CCDC155Q8N6L0 562 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 MMS19Q96T76 1030 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 P2RX7Q99572 595 aaKnown RBP10.79□□□□□ -0.68
LIG3-216ENST00000593099 C1orf112Q9NSG2 853 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 STRNO43815 780 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 NR2F2P24468 414 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 PPP2R3AQ06190 1150 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 ASIC2Q16515 512 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 SLFN12LQ6IEE8 588 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 KIF18AQ8NI77 898 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 CACTINQ8WUQ7 758 aaKnown RBP10.79□□□□□ -0.68
LIG3-216ENST00000593099 MXRA8Q9BRK3 442 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 ZBED2Q9BTP6 218 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 POTEB3A0JP26 581 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 POTECB2RU33 542 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 SKILP12757 684 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 ACTN2P35609 894 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 LRRC41Q15345 812 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 HSP90B2PQ58FF3 399 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 GNASQ5JWF2 1037 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 POTEBQ6S5H4 581 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 ERO1AQ96HE7 468 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 MTRQ99707 1265 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 EIF2AK1Q9BQI3 630 aaKnown RBP10.79□□□□□ -0.68
LIG3-216ENST00000593099 EMILIN3Q9NT22 766 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 AGTPBP1Q9UPW5 1226 aa10.79□□□□□ -0.68
LIG3-216ENST00000593099 ARHGEF37A1IGU5 675 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 DDIT3P35638 169 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 LAMC2Q13753 1193 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 XKR3Q5GH77 459 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 LIN9Q5TKA1 542 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 GBP6Q6ZN66 633 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 RNF180Q86T96 592 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 ZNF354CQ86Y25 554 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 ANKRD36BP1Q96IX9 119 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 NMRK2Q9NPI5 230 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 RNF216Q9NWF9 866 aaPredicted RBP10.78□□□□□ -0.68
LIG3-216ENST00000593099 PITPNM2Q9BZ72 1349 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 GOLGA6L10A6NI86 522 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 IRF6O14896 467 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 TACC1O75410 805 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 URI1O94763 535 aaPredicted RBP10.78□□□□□ -0.68
LIG3-216ENST00000593099 TNFAIP2Q03169 654 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 LRMPQ12912 555 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 SMC1AQ14683 1233 aaKnown RBP10.78□□□□□ -0.68
LIG3-216ENST00000593099 SURF1Q15526 300 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 MTMR14Q8NCE2 650 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 IQCDQ96DY2 449 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 WDR18Q9BV38 432 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 C2orf40Q9H1Z8 148 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 TMEM63CQ9P1W3 806 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 ZC3H4Q9UPT8 1303 aaKnown RBP10.78□□□□□ -0.68
LIG3-216ENST00000593099 FZD9O00144 591 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 KRT86O43790 486 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 PSMC2P35998 433 aaKnown RBP10.78□□□□□ -0.68
LIG3-216ENST00000593099 OAZ1P54368 228 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 ZNF280AP59817 542 aaPredicted RBP10.78□□□□□ -0.68
LIG3-216ENST00000593099 FKBP3Q00688 224 aaKnown RBP10.78□□□□□ -0.68
LIG3-216ENST00000593099 PPFIA1Q13136 1202 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 SPATA1Q5VX52 437 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 EP400NLQ6ZTU2 488 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 GPRASP2Q96D09 838 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 RIT2Q99578 217 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 GCOM2Q9BZD3 368 aaPredicted RBP10.78□□□□□ -0.68
LIG3-216ENST00000593099 NACA2Q9H009 215 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 ESPNB1AK53 854 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 KCNJ18B7U540 433 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 E9PMD0 336 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 CCDC175P0C221 793 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 ATP2C1P98194 919 aaPredicted RBP10.78□□□□□ -0.68
LIG3-216ENST00000593099 KCNJ12Q14500 433 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 PDIA5Q14554 519 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 ARHGAP44Q17R89 818 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 MOB2Q70IA6 237 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 GLT1D1Q96MS3 346 aa10.78□□□□□ -0.68
LIG3-216ENST00000593099 HPS5Q9UPZ3 1129 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms