RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 NAA35Q5VZE5 725 aa16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 LRIG3Q6UXM1 1119 aa16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 NBPF5PQ86XG9 351 aaPredicted RBP16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 PRPF38AQ8NAV1 312 aaKnown RBP16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 SETDB2Q96T68 719 aa16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 GANQ9H2C0 597 aa16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 GGA2Q9UJY4 613 aa16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 LEMD3Q9Y2U8 911 aa16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 STRCQ7RTU9 1775 aa16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 BHMG1C9JSJ3 638 aaPredicted RBP16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 MDH1P40925 334 aaKnown RBP16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 KLHL30Q0D2K2 578 aa16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 ITGB3BPQ13352 177 aaPredicted RBP16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 MICALCLQ6ZW33 695 aa16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 COA7Q96BR5 231 aa16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 TAF1DQ9H5J8 278 aaPredicted RBP16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 PLCB1Q9NQ66 1216 aa16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 ADAMTS1Q9UHI8 967 aa16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 MYH4Q9Y623 1939 aa16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 PDHBP11177 359 aa16.31■□□□□ 0.2
SMARCA4-219ENST00000592604 TRADDQ15628 312 aa16.31■□□□□ 0.2
SMARCA4-219ENST00000592604 OTUD6BQ8N6M0 293 aa16.31■□□□□ 0.2
SMARCA4-219ENST00000592604 SCFD2Q8WU76 684 aa16.31■□□□□ 0.2
SMARCA4-219ENST00000592604 HAS1Q92839 578 aa16.31■□□□□ 0.2
SMARCA4-219ENST00000592604 TMBIM4Q9HC24 238 aa16.31■□□□□ 0.2
SMARCA4-219ENST00000592604 BMP2KQ9NSY1 1161 aaPredicted RBP16.31■□□□□ 0.2
SMARCA4-219ENST00000592604 NARFQ9UHQ1 456 aa16.31■□□□□ 0.2
SMARCA4-219ENST00000592604 PACSIN2Q9UNF0 486 aaPredicted RBP16.31■□□□□ 0.2
SMARCA4-219ENST00000592604 CNTNAP4Q9C0A0 1308 aa16.31■□□□□ 0.2
SMARCA4-219ENST00000592604 GPR75-ASB3A0A0A6YYF3 556 aa16.31■□□□□ 0.2
SMARCA4-219ENST00000592604 KIAA0754O94854 1291 aa16.31■□□□□ 0.2
SMARCA4-219ENST00000592604 RAPGEF1Q13905 1077 aa16.31■□□□□ 0.2
SMARCA4-219ENST00000592604 FBXW10Q5XX13 1052 aa16.31■□□□□ 0.2
SMARCA4-219ENST00000592604 KCNV1Q6PIU1 500 aa16.31■□□□□ 0.2
SMARCA4-219ENST00000592604 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.31■□□□□ 0.2
SMARCA4-219ENST00000592604 PACSIN1Q9BY11 444 aa16.31■□□□□ 0.2
SMARCA4-219ENST00000592604 ZPR1O75312 459 aa16.3■□□□□ 0.2
SMARCA4-219ENST00000592604 USP8P40818 1118 aa16.3■□□□□ 0.2
SMARCA4-219ENST00000592604 BTDP43251 543 aa16.3■□□□□ 0.2
SMARCA4-219ENST00000592604 ASIC2Q16515 512 aa16.3■□□□□ 0.2
SMARCA4-219ENST00000592604 TPTE2Q6XPS3 522 aa16.3■□□□□ 0.2
SMARCA4-219ENST00000592604 ZNF473Q8WTR7 871 aaKnown RBP16.3■□□□□ 0.2
SMARCA4-219ENST00000592604 PBKQ96KB5 322 aa16.3■□□□□ 0.2
SMARCA4-219ENST00000592604 KCTD10Q9H3F6 313 aa16.3■□□□□ 0.2
SMARCA4-219ENST00000592604 PLAAQ9Y263 795 aa16.3■□□□□ 0.2
SMARCA4-219ENST00000592604 ECHS1P30084 290 aa16.3■□□□□ 0.2
SMARCA4-219ENST00000592604 DNA2P51530 1060 aa16.3■□□□□ 0.2
SMARCA4-219ENST00000592604 USP11P51784 963 aa16.3■□□□□ 0.2
SMARCA4-219ENST00000592604 CUL1Q13616 776 aa16.3■□□□□ 0.2
SMARCA4-219ENST00000592604 RPS6KA1Q15418 735 aa16.3■□□□□ 0.2
SMARCA4-219ENST00000592604 FAM133AQ8N9E0 248 aa16.3■□□□□ 0.2
SMARCA4-219ENST00000592604 ACTRT1Q8TDG2 376 aa16.3■□□□□ 0.2
SMARCA4-219ENST00000592604 TAF4BQ92750 862 aa16.3■□□□□ 0.2
SMARCA4-219ENST00000592604 FGFBP2Q9BYJ0 223 aa16.3■□□□□ 0.2
SMARCA4-219ENST00000592604 NT5C3AQ9H0P0 336 aa16.3■□□□□ 0.2
SMARCA4-219ENST00000592604 KCNQ2O43526 872 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 CLK2P49760 499 aaKnown RBP16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 ASPRV1Q53RT3 343 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 PPP1R18Q6NYC8 613 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 NLRP14Q86W24 1093 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 CCDC65Q8IXS2 484 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 MYCBPAPQ8TBZ2 947 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 CCT8L2Q96SF2 557 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 KIF4AO95239 1232 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 ERVK-9P63128 1117 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 CEP85LQ5SZL2 805 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 DPY19L2P1Q6NXN4 242 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 C15orf52Q6ZUT6 534 aaKnown RBP16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 CALR3Q96L12 384 aaKnown RBP16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 SH3BP1Q9Y3L3 701 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 CAPN7Q9Y6W3 813 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 KDM3AQ9Y4C1 1321 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 H0YGN5 161 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 FAM107AO95990 144 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 SNHG28P0DPA3 235 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 EDRF1Q3B7T1 1238 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 PPP4R3CPQ6ZMV5 832 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 IRF2BP2Q7Z5L9 587 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 KLHL7Q8IXQ5 586 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 TEX11Q8IYF3 940 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 ARFGAP2Q8N6H7 521 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 SCFD1Q8WVM8 642 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 ANKIB1Q9P2G1 1089 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 DDX25Q9UHL0 483 aaKnown RBP16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 NFS1Q9Y697 457 aa16.29■□□□□ 0.2
SMARCA4-219ENST00000592604 NHSQ6T4R5 1651 aa16.28■□□□□ 0.2
SMARCA4-219ENST00000592604 MYH7BA7E2Y1 1941 aa16.28■□□□□ 0.2
SMARCA4-219ENST00000592604 PLIN4Q96Q06 1357 aa16.28■□□□□ 0.2
SMARCA4-219ENST00000592604 ZBTB48P10074 688 aaPredicted RBP16.28■□□□□ 0.2
SMARCA4-219ENST00000592604 PLCG2P16885 1265 aa16.28■□□□□ 0.2
SMARCA4-219ENST00000592604 TNNI2P48788 182 aa16.28■□□□□ 0.2
SMARCA4-219ENST00000592604 RNASE9P60153 205 aaKnown RBP16.28■□□□□ 0.2
SMARCA4-219ENST00000592604 ARID5AQ03989 594 aa16.28■□□□□ 0.2
SMARCA4-219ENST00000592604 ZNF804AQ7Z570 1209 aa16.28■□□□□ 0.2
SMARCA4-219ENST00000592604 LRRC57Q8N9N7 239 aa16.28■□□□□ 0.2
SMARCA4-219ENST00000592604 BZW2Q9Y6E2 419 aaKnown RBP16.28■□□□□ 0.2
SMARCA4-219ENST00000592604 KIF13BQ9NQT8 1826 aa16.28■□□□□ 0.2
SMARCA4-219ENST00000592604 FRMPD2Q68DX3 1309 aaPredicted RBP16.28■□□□□ 0.2
SMARCA4-219ENST00000592604 KCNK3O14649 394 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms