RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 H2AFXP16104 143 aaPredicted RBP11.76□□□□□ -0.53
ZNF540-208ENST00000589857 MCM3P25205 808 aa11.76□□□□□ -0.53
ZNF540-208ENST00000589857 STK4Q13043 487 aa11.76□□□□□ -0.53
ZNF540-208ENST00000589857 SPA17Q15506 151 aa11.76□□□□□ -0.53
ZNF540-208ENST00000589857 VWA3BQ502W6 1294 aa11.76□□□□□ -0.53
ZNF540-208ENST00000589857 ZNF569Q5MCW4 686 aa11.76□□□□□ -0.53
ZNF540-208ENST00000589857 FAM26FQ5R3K3 315 aa11.76□□□□□ -0.53
ZNF540-208ENST00000589857 FKBP1CQ5VVH2 108 aa11.76□□□□□ -0.53
ZNF540-208ENST00000589857 ANKRD40Q6AI12 368 aa11.76□□□□□ -0.53
ZNF540-208ENST00000589857 TTBK2Q6IQ55 1244 aa11.76□□□□□ -0.53
ZNF540-208ENST00000589857 KRT222Q8N1A0 295 aa11.76□□□□□ -0.53
ZNF540-208ENST00000589857 DDX12PQ92771 950 aa11.76□□□□□ -0.53
ZNF540-208ENST00000589857 RPGRIP1Q96KN7 1286 aa11.76□□□□□ -0.53
ZNF540-208ENST00000589857 CARD6Q9BX69 1037 aa11.76□□□□□ -0.53
ZNF540-208ENST00000589857 GBP3Q9H0R5 595 aa11.76□□□□□ -0.53
ZNF540-208ENST00000589857 ZFYVE28Q9HCC9 887 aa11.76□□□□□ -0.53
ZNF540-208ENST00000589857 KCNMB3Q9NPA1 279 aa11.76□□□□□ -0.53
ZNF540-208ENST00000589857 LZTFL1Q9NQ48 299 aa11.76□□□□□ -0.53
ZNF540-208ENST00000589857 CDK5RAP2Q96SN8 1893 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 DDTLA6NHG4 134 aaPredicted RBP11.75□□□□□ -0.53
ZNF540-208ENST00000589857 B4DLN1 442 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 EIF3CLB5ME19 914 aaKnown RBP11.75□□□□□ -0.53
ZNF540-208ENST00000589857 F5H6K3 240 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 USO1O60763 962 aaKnown RBP11.75□□□□□ -0.53
ZNF540-208ENST00000589857 PPP1R11O60927 126 aaPredicted RBP11.75□□□□□ -0.53
ZNF540-208ENST00000589857 ERLIN1O75477 346 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 GNRH1P01148 92 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 MUTP22033 750 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 KCNA4P22459 653 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 SLC16A2P36021 539 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 SREBF1P36956 1147 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 ARHGAP4P98171 946 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 FKBP3Q00688 224 aaKnown RBP11.75□□□□□ -0.53
ZNF540-208ENST00000589857 KLRC3Q07444 240 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 TCP10Q12799 353 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 PTPN21Q16825 1174 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 ERCC6LQ2NKX8 1250 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 SLC9C1Q4G0N8 1177 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 IQCEQ6IPM2 695 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 SRGAP1Q7Z6B7 1085 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 KIAA1328Q86T90 577 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 FAM160B2Q86V87 743 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 CHURC1Q8WUH1 139 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 UBE2Q2Q8WVN8 375 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 WDR24Q96S15 920 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 EIF3CQ99613 913 aaKnown RBP11.75□□□□□ -0.53
ZNF540-208ENST00000589857 MXD3Q9BW11 206 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 DNAJC18Q9H819 358 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 MRPL44Q9H9J2 332 aaKnown RBP11.75□□□□□ -0.53
ZNF540-208ENST00000589857 SLC39A2Q9NP94 309 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 PANK4Q9NVE7 773 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 PNMA2Q9UL42 364 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 FAM184BQ9ULE4 1060 aa11.75□□□□□ -0.53
ZNF540-208ENST00000589857 ANO9A1A5B4 782 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 POTEFA5A3E0 1075 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 POTEMA6NI47 508 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 PIK3CDO00329 1044 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 PLA2G6O60733 806 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 NDUFB10O96000 172 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 CYP3A4P08684 503 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 PLA2G4BP0C869 781 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 FCER1AP12319 257 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 HNRNPH3P31942 346 aaKnown RBP11.74□□□□□ -0.53
ZNF540-208ENST00000589857 CIITAP33076 1130 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 GTF2A2P52657 109 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 PMS1P54277 932 aaKnown RBP11.74□□□□□ -0.53
ZNF540-208ENST00000589857 PRMT2P55345 433 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 CHMP4BP1P59074 171 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 ERVK-24P63145 666 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 GABPB1Q06547 395 aaPredicted RBP11.74□□□□□ -0.53
ZNF540-208ENST00000589857 CKAP4Q07065 602 aaKnown RBP11.74□□□□□ -0.53
ZNF540-208ENST00000589857 EHHADHQ08426 723 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 COASYQ13057 564 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 MTF1Q14872 753 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 BRD3Q15059 726 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 CCDC40Q4G0X9 1142 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 FBXO38Q6PIJ6 1188 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 CLEC10AQ8IUN9 316 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 KIAA0895Q8NCT3 520 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 NEK11Q8NG66 645 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 CD99L2Q8TCZ2 262 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 FAM151AQ8WW52 585 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 HAS1Q92839 578 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 HOOK2Q96ED9 719 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 NDST4Q9H3R1 872 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.74□□□□□ -0.53
ZNF540-208ENST00000589857 VEZTQ9HBM0 779 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 DNM3Q9UQ16 869 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 COL4A3BPQ9Y5P4 624 aa11.74□□□□□ -0.53
ZNF540-208ENST00000589857 TESPA1A2RU30 521 aaPredicted RBP11.73□□□□□ -0.53
ZNF540-208ENST00000589857 CTAGE15A4D2H0 777 aa11.73□□□□□ -0.53
ZNF540-208ENST00000589857 IGF2BP3O00425 579 aaKnown RBP eCLIP11.73□□□□□ -0.53
ZNF540-208ENST00000589857 CTAGE8P0CG41 777 aa11.73□□□□□ -0.53
ZNF540-208ENST00000589857 GAP43P17677 238 aa11.73□□□□□ -0.53
ZNF540-208ENST00000589857 ZNF76P36508 570 aa11.73□□□□□ -0.53
ZNF540-208ENST00000589857 STAT2P52630 851 aa11.73□□□□□ -0.53
ZNF540-208ENST00000589857 CRHR2Q13324 411 aa11.73□□□□□ -0.53
ZNF540-208ENST00000589857 SCN9AQ15858 1988 aa11.73□□□□□ -0.53
ZNF540-208ENST00000589857 EDRF1Q3B7T1 1238 aa11.73□□□□□ -0.53
ZNF540-208ENST00000589857 STXBP4Q6ZWJ1 553 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms