RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 ARHGAP4P98171 946 aa13.66□□□□□ -0.22
LIG3-209ENST00000586435 EPC2Q52LR7 807 aa13.66□□□□□ -0.22
LIG3-209ENST00000586435 TIGD5Q53EQ6 642 aa13.66□□□□□ -0.22
LIG3-209ENST00000586435 TAF2Q6P1X5 1199 aa13.66□□□□□ -0.22
LIG3-209ENST00000586435 CASC1Q6TDU7 716 aa13.66□□□□□ -0.22
LIG3-209ENST00000586435 PIBF1Q8WXW3 757 aa13.66□□□□□ -0.22
LIG3-209ENST00000586435 TMEM87BQ96K49 555 aa13.66□□□□□ -0.22
LIG3-209ENST00000586435 YME1L1Q96TA2 773 aa13.66□□□□□ -0.22
LIG3-209ENST00000586435 MYL10Q9BUA6 226 aa13.66□□□□□ -0.22
LIG3-209ENST00000586435 IFIH1Q9BYX4 1025 aaKnown RBP13.66□□□□□ -0.22
LIG3-209ENST00000586435 OSBPL7Q9BZF2 842 aa13.66□□□□□ -0.22
LIG3-209ENST00000586435 ARIH1Q9Y4X5 557 aaPredicted RBP13.66□□□□□ -0.22
LIG3-209ENST00000586435 LOXHD1Q8IVV2 1947 aa13.65□□□□□ -0.22
LIG3-209ENST00000586435 SH2B2O14492 632 aaPredicted RBP13.65□□□□□ -0.22
LIG3-209ENST00000586435 PRC1O43663 620 aa13.65□□□□□ -0.22
LIG3-209ENST00000586435 CALM1P0DP23 149 aa13.65□□□□□ -0.22
LIG3-209ENST00000586435 CALM2P0DP24 149 aa13.65□□□□□ -0.22
LIG3-209ENST00000586435 CALM3P0DP25 149 aa13.65□□□□□ -0.22
LIG3-209ENST00000586435 KCNA2P16389 499 aa13.65□□□□□ -0.22
LIG3-209ENST00000586435 MCM5P33992 734 aa13.65□□□□□ -0.22
LIG3-209ENST00000586435 TCF7P36402 384 aaPredicted RBP13.65□□□□□ -0.22
LIG3-209ENST00000586435 LIFRP42702 1097 aa13.65□□□□□ -0.22
LIG3-209ENST00000586435 UTP14CQ5TAP6 766 aaKnown RBP13.65□□□□□ -0.22
LIG3-209ENST00000586435 SRBD1Q8N5C6 995 aaKnown RBP13.65□□□□□ -0.22
LIG3-209ENST00000586435 EPHX3Q9H6B9 360 aa13.65□□□□□ -0.22
LIG3-209ENST00000586435 EHMT1Q9H9B1 1298 aa13.65□□□□□ -0.22
LIG3-209ENST00000586435 TELO2Q9Y4R8 837 aa13.65□□□□□ -0.22
LIG3-209ENST00000586435 MBLAC1A4D2B0 266 aaPredicted RBP13.64□□□□□ -0.23
LIG3-209ENST00000586435 RBAK-RBAKDNI3L0D1 243 aa13.64□□□□□ -0.23
LIG3-209ENST00000586435 MAFGO15525 162 aa13.64□□□□□ -0.23
LIG3-209ENST00000586435 PLEKHA8P1O95397 391 aa13.64□□□□□ -0.23
LIG3-209ENST00000586435 RPLP2P05387 115 aaKnown RBP13.64□□□□□ -0.23
LIG3-209ENST00000586435 KCNA5P22460 613 aa13.64□□□□□ -0.23
LIG3-209ENST00000586435 MGAT3Q09327 533 aa13.64□□□□□ -0.23
LIG3-209ENST00000586435 COL19A1Q14993 1142 aa13.64□□□□□ -0.23
LIG3-209ENST00000586435 PUS10Q3MIT2 529 aaKnown RBP13.64□□□□□ -0.23
LIG3-209ENST00000586435 TMEM192Q8IY95 271 aa13.64□□□□□ -0.23
LIG3-209ENST00000586435 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.64□□□□□ -0.23
LIG3-209ENST00000586435 NEK9Q8TD19 979 aa13.64□□□□□ -0.23
LIG3-209ENST00000586435 LRFN3Q9BTN0 628 aa13.64□□□□□ -0.23
LIG3-209ENST00000586435 PSTPIP2Q9H939 334 aa13.64□□□□□ -0.23
LIG3-209ENST00000586435 ERAP1Q9NZ08 941 aa13.64□□□□□ -0.23
LIG3-209ENST00000586435 UBIAD1Q9Y5Z9 338 aa13.64□□□□□ -0.23
LIG3-209ENST00000586435 KIAA1671Q9BY89 1806 aa13.63□□□□□ -0.23
LIG3-209ENST00000586435 CCDC69A6NI79 296 aa13.63□□□□□ -0.23
LIG3-209ENST00000586435 C5orf67F2Z3F1 127 aa13.63□□□□□ -0.23
LIG3-209ENST00000586435 PI4K2BG5E9Z4 385 aa13.63□□□□□ -0.23
LIG3-209ENST00000586435 GPR37L1O60883 481 aa13.63□□□□□ -0.23
LIG3-209ENST00000586435 ATP9AO75110 1047 aa13.63□□□□□ -0.23
LIG3-209ENST00000586435 UPP2O95045 317 aa13.63□□□□□ -0.23
LIG3-209ENST00000586435 CHRNA1P02708 482 aa13.63□□□□□ -0.23
LIG3-209ENST00000586435 ITGB5P18084 799 aa13.63□□□□□ -0.23
LIG3-209ENST00000586435 SP4Q02446 784 aa13.63□□□□□ -0.23
LIG3-209ENST00000586435 PPFIA1Q13136 1202 aa13.63□□□□□ -0.23
LIG3-209ENST00000586435 GPM6BQ13491 265 aa13.63□□□□□ -0.23
LIG3-209ENST00000586435 TMEM31Q5JXX7 168 aa13.63□□□□□ -0.23
LIG3-209ENST00000586435 NFXL1Q6ZNB6 911 aa13.63□□□□□ -0.23
LIG3-209ENST00000586435 RSPH3Q86UC2 560 aa13.63□□□□□ -0.23
LIG3-209ENST00000586435 TEX2Q8IWB9 1127 aa13.63□□□□□ -0.23
LIG3-209ENST00000586435 FAM178BQ8IXR5 827 aa13.63□□□□□ -0.23
LIG3-209ENST00000586435 BANK1Q8NDB2 785 aa13.63□□□□□ -0.23
LIG3-209ENST00000586435 SEPT1Q8WYJ6 367 aa13.63□□□□□ -0.23
LIG3-209ENST00000586435 KHSRPQ92945 711 aaKnown RBP eCLIP13.63□□□□□ -0.23
LIG3-209ENST00000586435 LSG1Q9H089 658 aaKnown RBP13.63□□□□□ -0.23
LIG3-209ENST00000586435 RC3H2Q9HBD1 1191 aaKnown RBP13.63□□□□□ -0.23
LIG3-209ENST00000586435 TUBE1Q9UJT0 475 aa13.63□□□□□ -0.23
LIG3-209ENST00000586435 RWDD3Q9Y3V2 267 aa13.63□□□□□ -0.23
LIG3-209ENST00000586435 SUPT16HQ9Y5B9 1047 aaKnown RBP13.63□□□□□ -0.23
LIG3-209ENST00000586435 GSTTP1A0A1W2PQM5 241 aa13.62□□□□□ -0.23
LIG3-209ENST00000586435 SPDYE3A6NKU9 549 aa13.62□□□□□ -0.23
LIG3-209ENST00000586435 RB1P06400 928 aa13.62□□□□□ -0.23
LIG3-209ENST00000586435 LINC00271P0C7V0 271 aa13.62□□□□□ -0.23
LIG3-209ENST00000586435 MTMR1Q13613 665 aa13.62□□□□□ -0.23
LIG3-209ENST00000586435 GRIK4Q16099 956 aa13.62□□□□□ -0.23
LIG3-209ENST00000586435 RUFY4Q6ZNE9 571 aa13.62□□□□□ -0.23
LIG3-209ENST00000586435 TMTC3Q6ZXV5 915 aa13.62□□□□□ -0.23
LIG3-209ENST00000586435 SGMS1Q86VZ5 419 aa13.62□□□□□ -0.23
LIG3-209ENST00000586435 FIBCD1Q8N539 461 aa13.62□□□□□ -0.23
LIG3-209ENST00000586435 PABPC5Q96DU9 382 aaKnown RBP13.62□□□□□ -0.23
LIG3-209ENST00000586435 FAM122AQ96E09 287 aa13.62□□□□□ -0.23
LIG3-209ENST00000586435 IL17RAQ96F46 866 aa13.62□□□□□ -0.23
LIG3-209ENST00000586435 SMARCAD1Q9H4L7 1026 aa13.62□□□□□ -0.23
LIG3-209ENST00000586435 NSUN3Q9H649 340 aaKnown RBP13.62□□□□□ -0.23
LIG3-209ENST00000586435 CD320Q9NPF0 282 aa13.62□□□□□ -0.23
LIG3-209ENST00000586435 C11orf16Q9NQ32 467 aa13.62□□□□□ -0.23
LIG3-209ENST00000586435 JADE2Q9NQC1 790 aa13.62□□□□□ -0.23
LIG3-209ENST00000586435 HCN4Q9Y3Q4 1203 aa13.62□□□□□ -0.23
LIG3-209ENST00000586435 ADGRA3Q8IWK6 1321 aa13.62□□□□□ -0.23
LIG3-209ENST00000586435 GRXCR2A6NFK2 248 aa13.61□□□□□ -0.23
LIG3-209ENST00000586435 SLC27A2O14975 620 aa13.61□□□□□ -0.23
LIG3-209ENST00000586435 GHRP10912 638 aa13.61□□□□□ -0.23
LIG3-209ENST00000586435 IL9P15248 144 aa13.61□□□□□ -0.23
LIG3-209ENST00000586435 LPIN1Q14693 890 aa13.61□□□□□ -0.23
LIG3-209ENST00000586435 FBXO47Q5MNV8 452 aa13.61□□□□□ -0.23
LIG3-209ENST00000586435 MARCH8Q5T0T0 291 aa13.61□□□□□ -0.23
LIG3-209ENST00000586435 PTCRAQ6ISU1 281 aaPredicted RBP13.61□□□□□ -0.23
LIG3-209ENST00000586435 TSHZ1Q6ZSZ6 1077 aa13.61□□□□□ -0.23
LIG3-209ENST00000586435 GJD3Q8N144 294 aa13.61□□□□□ -0.23
LIG3-209ENST00000586435 CLP1Q92989 425 aaKnown RBP13.61□□□□□ -0.23
LIG3-209ENST00000586435 LMAN2LQ9H0V9 348 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms