RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 FBXL18Q96ME1 805 aa25.23■■□□□ 1.63
SHMT1-210ENST00000583780 EHMT1Q9H9B1 1298 aa25.23■■□□□ 1.63
SHMT1-210ENST00000583780 SENP2Q9HC62 589 aa25.23■■□□□ 1.63
SHMT1-210ENST00000583780 NOP56O00567 594 aaKnown RBP25.22■■□□□ 1.63
SHMT1-210ENST00000583780 GRM6O15303 877 aa25.22■■□□□ 1.63
SHMT1-210ENST00000583780 RB1P06400 928 aa25.22■■□□□ 1.63
SHMT1-210ENST00000583780 IRS1P35568 1242 aa25.22■■□□□ 1.63
SHMT1-210ENST00000583780 RPAINQ86UA6 219 aa25.22■■□□□ 1.63
SHMT1-210ENST00000583780 FIBCD1Q8N539 461 aa25.22■■□□□ 1.63
SHMT1-210ENST00000583780 LMBR1Q8WVP7 490 aa25.22■■□□□ 1.63
SHMT1-210ENST00000583780 RC3H2Q9HBD1 1191 aaKnown RBP25.22■■□□□ 1.63
SHMT1-210ENST00000583780 PNMA6FA0A0J9YX94 578 aa25.21■■□□□ 1.63
SHMT1-210ENST00000583780 NCK2O43639 380 aa25.21■■□□□ 1.63
SHMT1-210ENST00000583780 STAM2O75886 525 aa25.21■■□□□ 1.63
SHMT1-210ENST00000583780 NHLH1Q02575 133 aa25.21■■□□□ 1.63
SHMT1-210ENST00000583780 HYAL1Q12794 435 aa25.21■■□□□ 1.63
SHMT1-210ENST00000583780 GNPTABQ3T906 1256 aa25.21■■□□□ 1.63
SHMT1-210ENST00000583780 FAM50BQ9Y247 325 aa25.21■■□□□ 1.63
SHMT1-210ENST00000583780 TECTAO75443 2155 aa25.2■■□□□ 1.62
SHMT1-210ENST00000583780 HIP1O00291 1037 aa25.2■■□□□ 1.62
SHMT1-210ENST00000583780 ENPP3O14638 875 aa25.2■■□□□ 1.62
SHMT1-210ENST00000583780 IGHDP01880 384 aa25.2■■□□□ 1.62
SHMT1-210ENST00000583780 MRE11P49959 708 aa25.2■■□□□ 1.62
SHMT1-210ENST00000583780 NUCB1Q02818 461 aa25.2■■□□□ 1.62
SHMT1-210ENST00000583780 TRAF1Q13077 416 aa25.2■■□□□ 1.62
SHMT1-210ENST00000583780 SMAD2Q15796 467 aaKnown RBP25.2■■□□□ 1.62
SHMT1-210ENST00000583780 UTP14CQ5TAP6 766 aaKnown RBP25.2■■□□□ 1.62
SHMT1-210ENST00000583780 ZNF689Q96CS4 500 aaPredicted RBP25.2■■□□□ 1.62
SHMT1-210ENST00000583780 LMAN2LQ9H0V9 348 aa25.2■■□□□ 1.62
SHMT1-210ENST00000583780 FIBPO43427 364 aa25.19■■□□□ 1.62
SHMT1-210ENST00000583780 MBTPS2O43462 519 aa25.19■■□□□ 1.62
SHMT1-210ENST00000583780 CTNNB1P35222 781 aa25.19■■□□□ 1.62
SHMT1-210ENST00000583780 GTF2F1P35269 517 aaKnown RBP eCLIP25.19■■□□□ 1.62
SHMT1-210ENST00000583780 ARHGAP4P98171 946 aa25.19■■□□□ 1.62
SHMT1-210ENST00000583780 MGAT3Q09327 533 aa25.19■■□□□ 1.62
SHMT1-210ENST00000583780 TROAPQ12815 778 aa25.19■■□□□ 1.62
SHMT1-210ENST00000583780 RUFY4Q6ZNE9 571 aa25.19■■□□□ 1.62
SHMT1-210ENST00000583780 CLP1Q92989 425 aaKnown RBP25.19■■□□□ 1.62
SHMT1-210ENST00000583780 SENP7Q9BQF6 1050 aa25.19■■□□□ 1.62
SHMT1-210ENST00000583780 KCNH6Q9H252 994 aa25.19■■□□□ 1.62
SHMT1-210ENST00000583780 NRCAMQ92823 1304 aa25.18■■□□□ 1.62
SHMT1-210ENST00000583780 CAMK1Q14012 370 aa25.18■■□□□ 1.62
SHMT1-210ENST00000583780 LPIN1Q14693 890 aa25.18■■□□□ 1.62
SHMT1-210ENST00000583780 HFE2Q6ZVN8 426 aa25.18■■□□□ 1.62
SHMT1-210ENST00000583780 GHRP10912 638 aa25.17■■□□□ 1.62
SHMT1-210ENST00000583780 EXOC6Q8TAG9 804 aa25.17■■□□□ 1.62
SHMT1-210ENST00000583780 C11orf84Q9BUA3 381 aaPredicted RBP25.17■■□□□ 1.62
SHMT1-210ENST00000583780 LOXHD1Q8IVV2 1947 aa25.16■■□□□ 1.62
SHMT1-210ENST00000583780 ATP9AO75110 1047 aa25.16■■□□□ 1.62
SHMT1-210ENST00000583780 CLUL1Q15846 466 aa25.16■■□□□ 1.62
SHMT1-210ENST00000583780 UPF3BQ9BZI7 483 aaKnown RBP25.16■■□□□ 1.62
SHMT1-210ENST00000583780 RWDD1Q9H446 243 aaPredicted RBP25.16■■□□□ 1.62
SHMT1-210ENST00000583780 ZNF215Q9UL58 517 aaPredicted RBP25.16■■□□□ 1.62
SHMT1-210ENST00000583780 ADGRA3Q8IWK6 1321 aa25.15■■□□□ 1.62
SHMT1-210ENST00000583780 LINC01565O15544 149 aa25.15■■□□□ 1.62
SHMT1-210ENST00000583780 TBX10O75333 385 aa25.15■■□□□ 1.62
SHMT1-210ENST00000583780 ADAM15Q13444 863 aa25.15■■□□□ 1.62
SHMT1-210ENST00000583780 PCNX4Q63HM2 1172 aa25.15■■□□□ 1.62
SHMT1-210ENST00000583780 USP17L6PQ6QN14 398 aa25.15■■□□□ 1.62
SHMT1-210ENST00000583780 RTN4RL1Q86UN2 441 aaPredicted RBP25.15■■□□□ 1.62
SHMT1-210ENST00000583780 CRIPAKQ8N1N5 446 aa25.15■■□□□ 1.62
SHMT1-210ENST00000583780 RWDD3Q9Y3V2 267 aa25.15■■□□□ 1.62
SHMT1-210ENST00000583780 GSTTP1A0A1W2PQM5 241 aa25.14■■□□□ 1.62
SHMT1-210ENST00000583780 MEIS2O14770 477 aa25.14■■□□□ 1.62
SHMT1-210ENST00000583780 IFIT3O14879 490 aaKnown RBP25.14■■□□□ 1.62
SHMT1-210ENST00000583780 DGKIO75912 1065 aa25.14■■□□□ 1.62
SHMT1-210ENST00000583780 CYP21A2P08686 494 aa25.14■■□□□ 1.62
SHMT1-210ENST00000583780 IRX6P78412 446 aaPredicted RBP25.14■■□□□ 1.62
SHMT1-210ENST00000583780 SP4Q02446 784 aa25.14■■□□□ 1.62
SHMT1-210ENST00000583780 HERC4Q5GLZ8 1057 aaPredicted RBP25.14■■□□□ 1.62
SHMT1-210ENST00000583780 MARCH8Q5T0T0 291 aa25.14■■□□□ 1.62
SHMT1-210ENST00000583780 RNF135Q8IUD6 432 aa25.14■■□□□ 1.62
SHMT1-210ENST00000583780 IGFLR1Q9H665 355 aa25.14■■□□□ 1.62
SHMT1-210ENST00000583780 ALG13Q9NP73 1137 aaKnown RBP25.14■■□□□ 1.62
SHMT1-210ENST00000583780 MUTYHQ9UIF7 546 aa25.14■■□□□ 1.62
SHMT1-210ENST00000583780 PLAGL2Q9UPG8 496 aa25.14■■□□□ 1.62
SHMT1-210ENST00000583780 TAF6LQ9Y6J9 622 aa25.14■■□□□ 1.62
SHMT1-210ENST00000583780 TCF7P36402 384 aaPredicted RBP25.13■■□□□ 1.61
SHMT1-210ENST00000583780 FBXO47Q5MNV8 452 aa25.13■■□□□ 1.61
SHMT1-210ENST00000583780 TAF2Q6P1X5 1199 aa25.13■■□□□ 1.61
SHMT1-210ENST00000583780 PIBF1Q8WXW3 757 aa25.13■■□□□ 1.61
SHMT1-210ENST00000583780 AGO3Q9H9G7 860 aaKnown RBP25.13■■□□□ 1.61
SHMT1-210ENST00000583780 KIAA1671Q9BY89 1806 aa25.12■■□□□ 1.61
SHMT1-210ENST00000583780 MBLAC1A4D2B0 266 aaPredicted RBP25.12■■□□□ 1.61
SHMT1-210ENST00000583780 MMP1P03956 469 aa25.12■■□□□ 1.61
SHMT1-210ENST00000583780 DNAJB1P25685 340 aa25.12■■□□□ 1.61
SHMT1-210ENST00000583780 BTG3Q14201 252 aaPredicted RBP25.12■■□□□ 1.61
SHMT1-210ENST00000583780 XRRA1Q6P2D8 792 aa25.12■■□□□ 1.61
SHMT1-210ENST00000583780 DNAJB3Q8WWF6 145 aa25.12■■□□□ 1.61
SHMT1-210ENST00000583780 LINC01599Q8WXQ3 324 aa25.12■■□□□ 1.61
SHMT1-210ENST00000583780 MSLNLQ96KJ4 702 aa25.12■■□□□ 1.61
SHMT1-210ENST00000583780 PLVAPQ9BX97 442 aa25.12■■□□□ 1.61
SHMT1-210ENST00000583780 PIK3CDO00329 1044 aa25.11■■□□□ 1.61
SHMT1-210ENST00000583780 KCNA2P16389 499 aa25.11■■□□□ 1.61
SHMT1-210ENST00000583780 PTH1RQ03431 593 aa25.11■■□□□ 1.61
SHMT1-210ENST00000583780 TRDNQ13061 729 aa25.11■■□□□ 1.61
SHMT1-210ENST00000583780 SMAD4Q13485 552 aaKnown RBP25.11■■□□□ 1.61
SHMT1-210ENST00000583780 AAMPQ13685 434 aa25.11■■□□□ 1.61
SHMT1-210ENST00000583780 IGDCC4Q8TDY8 1250 aa25.11■■□□□ 1.61
SHMT1-210ENST00000583780 CD207Q9UJ71 328 aa25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms