RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 MYO15BQ96JP2 1530 aa6.16□□□□□ -1.42
SS18-223ENST00000583595 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.16□□□□□ -1.42
SS18-223ENST00000583595 MEIS1O00470 390 aa6.16□□□□□ -1.42
SS18-223ENST00000583595 U2AF1L5P0DN76 240 aaPredicted RBP6.16□□□□□ -1.42
SS18-223ENST00000583595 LSSP48449 732 aa6.16□□□□□ -1.42
SS18-223ENST00000583595 U2AF1Q01081 240 aaKnown RBP eCLIP6.16□□□□□ -1.422e-6■■■■□ 21.7
SS18-223ENST00000583595 TEKQ02763 1124 aa6.16□□□□□ -1.42
SS18-223ENST00000583595 GALEQ14376 348 aa6.16□□□□□ -1.42
SS18-223ENST00000583595 TMC3Q7Z5M5 1100 aa6.16□□□□□ -1.42
SS18-223ENST00000583595 OXR1Q8N573 874 aa6.16□□□□□ -1.42
SS18-223ENST00000583595 CLRN3Q8NCR9 226 aa6.16□□□□□ -1.42
SS18-223ENST00000583595 PCDH19Q8TAB3 1148 aa6.16□□□□□ -1.42
SS18-223ENST00000583595 PNISRQ8TF01 805 aaKnown RBP6.16□□□□□ -1.42
SS18-223ENST00000583595 PHF20Q9BVI0 1012 aa6.16□□□□□ -1.42
SS18-223ENST00000583595 NSUN3Q9H649 340 aaKnown RBP6.16□□□□□ -1.42
SS18-223ENST00000583595 SP110Q9HB58 689 aa6.16□□□□□ -1.42
SS18-223ENST00000583595 B4GALT6Q9UBX8 382 aa6.16□□□□□ -1.42
SS18-223ENST00000583595 SAP30BPQ9UHR5 308 aaKnown RBP6.16□□□□□ -1.42
SS18-223ENST00000583595 DBX1A6NMT0 343 aa6.15□□□□□ -1.42
SS18-223ENST00000583595 ARVCFO00192 962 aa6.15□□□□□ -1.42
SS18-223ENST00000583595 NRDCO43847 1150 aa6.15□□□□□ -1.42
SS18-223ENST00000583595 APPP05067 770 aa6.15□□□□□ -1.42
SS18-223ENST00000583595 THBDP07204 575 aa6.15□□□□□ -1.42
SS18-223ENST00000583595 LCP1P13796 627 aa6.15□□□□□ -1.42
SS18-223ENST00000583595 KPNA1P52294 538 aaPredicted RBP6.15□□□□□ -1.42
SS18-223ENST00000583595 SCAND1P57086 179 aa6.15□□□□□ -1.42
SS18-223ENST00000583595 HTRA3P83110 453 aa6.15□□□□□ -1.42
SS18-223ENST00000583595 GTF2H3Q13889 308 aa6.15□□□□□ -1.42
SS18-223ENST00000583595 GBX1Q14549 363 aa6.15□□□□□ -1.42
SS18-223ENST00000583595 SAFBQ15424 915 aaKnown RBP eCLIP6.15□□□□□ -1.42
SS18-223ENST00000583595 GRAMD1BQ3KR37 738 aa6.15□□□□□ -1.42
SS18-223ENST00000583595 INO80DQ53TQ3 878 aaPredicted RBP6.15□□□□□ -1.42
SS18-223ENST00000583595 FAM83BQ5T0W9 1011 aa6.15□□□□□ -1.42
SS18-223ENST00000583595 SYDE1Q6ZW31 735 aaPredicted RBP6.15□□□□□ -1.42
SS18-223ENST00000583595 DAGLBQ8NCG7 672 aa6.15□□□□□ -1.42
SS18-223ENST00000583595 PARD3BQ8TEW8 1205 aa6.15□□□□□ -1.42
SS18-223ENST00000583595 FRS2Q8WU20 508 aa6.15□□□□□ -1.42
SS18-223ENST00000583595 SCYL1Q96KG9 808 aa6.15□□□□□ -1.42
SS18-223ENST00000583595 STRBPQ96SI9 672 aaKnown RBP6.15□□□□□ -1.42
SS18-223ENST00000583595 HDAC8Q9BY41 377 aa6.15□□□□□ -1.42
SS18-223ENST00000583595 LDHAL6BQ9BYZ2 381 aaPredicted RBP6.15□□□□□ -1.42
SS18-223ENST00000583595 RNF32Q9H0A6 362 aa6.15□□□□□ -1.42
SS18-223ENST00000583595 KCNK12Q9HB15 430 aa6.15□□□□□ -1.42
SS18-223ENST00000583595 CABP5Q9NP86 173 aa6.15□□□□□ -1.42
SS18-223ENST00000583595 EBF1Q9UH73 591 aa6.15□□□□□ -1.42
SS18-223ENST00000583595 GIT1Q9Y2X7 761 aa6.15□□□□□ -1.42
SS18-223ENST00000583595 PTPDC1A2A3K4 754 aa6.14□□□□□ -1.43
SS18-223ENST00000583595 FITM1A5D6W6 292 aa6.14□□□□□ -1.43
SS18-223ENST00000583595 H0Y8X5 98 aa6.14□□□□□ -1.43
SS18-223ENST00000583595 ULK1O75385 1050 aa6.14□□□□□ -1.43
SS18-223ENST00000583595 RBP3P10745 1247 aa6.14□□□□□ -1.43
SS18-223ENST00000583595 DNM2P50570 870 aa6.14□□□□□ -1.43
SS18-223ENST00000583595 GPR85P60893 370 aa6.14□□□□□ -1.43
SS18-223ENST00000583595 FAPQ12884 760 aa6.14□□□□□ -1.43
SS18-223ENST00000583595 TMEM177Q53S58 311 aa6.14□□□□□ -1.43
SS18-223ENST00000583595 BROXQ5VW32 411 aa6.14□□□□□ -1.43
SS18-223ENST00000583595 ERAP2Q6P179 960 aa6.14□□□□□ -1.43
SS18-223ENST00000583595 RNF111Q6ZNA4 994 aa6.14□□□□□ -1.43
SS18-223ENST00000583595 SPPL2CQ8IUH8 684 aa6.14□□□□□ -1.43
SS18-223ENST00000583595 PPIL6Q8IXY8 311 aa6.14□□□□□ -1.43
SS18-223ENST00000583595 CMTR2Q8IYT2 770 aaKnown RBP6.14□□□□□ -1.43
SS18-223ENST00000583595 LILRA2Q8N149 483 aa6.14□□□□□ -1.43
SS18-223ENST00000583595 USHBP1Q8N6Y0 703 aa6.14□□□□□ -1.43
SS18-223ENST00000583595 FBXO15Q8NCQ5 510 aaPredicted RBP6.14□□□□□ -1.43
SS18-223ENST00000583595 BHLHE22Q8NFJ8 381 aaPredicted RBP6.14□□□□□ -1.43
SS18-223ENST00000583595 HSPBAP1Q96EW2 488 aa6.14□□□□□ -1.43
SS18-223ENST00000583595 TCTN2Q96GX1 697 aa6.14□□□□□ -1.43
SS18-223ENST00000583595 DSCC1Q9BVC3 393 aa6.14□□□□□ -1.43
SS18-223ENST00000583595 DCP1AQ9NPI6 582 aaPredicted RBP6.14□□□□□ -1.43
SS18-223ENST00000583595 MAN1C1Q9NR34 630 aa6.14□□□□□ -1.43
SS18-223ENST00000583595 MKS1Q9NXB0 559 aa6.14□□□□□ -1.43
SS18-223ENST00000583595 PUF60Q9UHX1 559 aaKnown RBP6.14□□□□□ -1.43
SS18-223ENST00000583595 SF3B6Q9Y3B4 125 aaKnown RBP6.14□□□□□ -1.43
SS18-223ENST00000583595 SSU72P8A0A1W2PR75 194 aa6.13□□□□□ -1.43
SS18-223ENST00000583595 ANO9A1A5B4 782 aa6.13□□□□□ -1.43
SS18-223ENST00000583595 TGM5O43548 720 aa6.13□□□□□ -1.43
SS18-223ENST00000583595 IL33O95760 270 aa6.13□□□□□ -1.43
SS18-223ENST00000583595 ASGR2P07307 311 aa6.13□□□□□ -1.43
SS18-223ENST00000583595 RPL10P27635 214 aaKnown RBP6.13□□□□□ -1.43
SS18-223ENST00000583595 HTR3AP46098 478 aa6.13□□□□□ -1.43
SS18-223ENST00000583595 RAP1GAPP47736 663 aa6.13□□□□□ -1.43
SS18-223ENST00000583595 MECP2P51608 486 aaKnown RBP6.13□□□□□ -1.43
SS18-223ENST00000583595 DUSP4Q13115 394 aa6.13□□□□□ -1.43
SS18-223ENST00000583595 NR0B2Q15466 257 aa6.13□□□□□ -1.43
SS18-223ENST00000583595 TIGD5Q53EQ6 642 aa6.13□□□□□ -1.43
SS18-223ENST00000583595 TMEM240Q5SV17 173 aa6.13□□□□□ -1.43
SS18-223ENST00000583595 ACBD5Q5T8D3 534 aaPredicted RBP6.13□□□□□ -1.43
SS18-223ENST00000583595 OVCH1Q7RTY7 1134 aa6.13□□□□□ -1.43
SS18-223ENST00000583595 C11orf74Q86VG3 221 aa6.13□□□□□ -1.43
SS18-223ENST00000583595 CCDC103Q8IW40 242 aa6.13□□□□□ -1.43
SS18-223ENST00000583595 ZNF655Q8N720 491 aaPredicted RBP6.13□□□□□ -1.43
SS18-223ENST00000583595 VPS37AQ8NEZ2 397 aa6.13□□□□□ -1.43
SS18-223ENST00000583595 LINC01599Q8WXQ3 324 aa6.13□□□□□ -1.43
SS18-223ENST00000583595 PPM1EQ8WY54 764 aa6.13□□□□□ -1.43
SS18-223ENST00000583595 COPS5Q92905 334 aa6.13□□□□□ -1.43
SS18-223ENST00000583595 SLC5A5Q92911 643 aa6.13□□□□□ -1.43
SS18-223ENST00000583595 PPP1R16BQ96T49 567 aa6.13□□□□□ -1.43
SS18-223ENST00000583595 ELAC2Q9BQ52 826 aaKnown RBP6.13□□□□□ -1.43
SS18-223ENST00000583595 FOXP3Q9BZS1 431 aa6.13□□□□□ -1.43
SS18-223ENST00000583595 EPB41L4BQ9H329 900 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms