RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 CYP2C8P10632 490 aa6.58□□□□□ -1.36
SMCHD1-204ENST00000581226 PI3P19957 117 aa6.58□□□□□ -1.36
SMCHD1-204ENST00000581226 NEK4P51957 841 aa6.58□□□□□ -1.36
SMCHD1-204ENST00000581226 LINC00310P59036 64 aa6.58□□□□□ -1.36
SMCHD1-204ENST00000581226 NKX3-2P78367 333 aa6.58□□□□□ -1.36
SMCHD1-204ENST00000581226 JAG1P78504 1218 aa6.58□□□□□ -1.36
SMCHD1-204ENST00000581226 ZNF385BQ569K4 471 aa6.58□□□□□ -1.36
SMCHD1-204ENST00000581226 BTBD8Q5XKL5 378 aa6.58□□□□□ -1.36
SMCHD1-204ENST00000581226 CDCA2Q69YH5 1023 aaPredicted RBP6.58□□□□□ -1.36
SMCHD1-204ENST00000581226 CNKSR3Q6P9H4 555 aa6.58□□□□□ -1.36
SMCHD1-204ENST00000581226 TEPPQ6URK8 271 aa6.58□□□□□ -1.36
SMCHD1-204ENST00000581226 TTLL11Q8NHH1 800 aa6.58□□□□□ -1.36
SMCHD1-204ENST00000581226 WNK4Q96J92 1243 aa6.58□□□□□ -1.36
SMCHD1-204ENST00000581226 LRG1P02750 347 aa6.57□□□□□ -1.36
SMCHD1-204ENST00000581226 CR1LQ2VPA4 569 aa6.57□□□□□ -1.36
SMCHD1-204ENST00000581226 PAN2Q504Q3 1202 aaKnown RBP6.57□□□□□ -1.36
SMCHD1-204ENST00000581226 TM4SF20Q53R12 229 aa6.57□□□□□ -1.36
SMCHD1-204ENST00000581226 FIGNQ5HY92 759 aa6.57□□□□□ -1.36
SMCHD1-204ENST00000581226 FAM129CQ86XR2 697 aa6.57□□□□□ -1.36
SMCHD1-204ENST00000581226 DDX1Q92499 740 aaKnown RBP6.57□□□□□ -1.36
SMCHD1-204ENST00000581226 SYT3Q9BQG1 590 aa6.57□□□□□ -1.36
SMCHD1-204ENST00000581226 PDGFDQ9GZP0 370 aaPredicted RBP6.57□□□□□ -1.36
SMCHD1-204ENST00000581226 RIC8BQ9NVN3 520 aa6.57□□□□□ -1.36
SMCHD1-204ENST00000581226 SLC12A8A0AV02 714 aa6.56□□□□□ -1.36
SMCHD1-204ENST00000581226 KPNA6O60684 536 aa6.56□□□□□ -1.36
SMCHD1-204ENST00000581226 MYCLP1P12525 358 aaPredicted RBP6.56□□□□□ -1.36
SMCHD1-204ENST00000581226 FAHP16930 419 aa6.56□□□□□ -1.36
SMCHD1-204ENST00000581226 PTPN1P18031 435 aaKnown RBP6.56□□□□□ -1.36
SMCHD1-204ENST00000581226 EGFLAMQ63HQ2 1017 aa6.56□□□□□ -1.36
SMCHD1-204ENST00000581226 HHIPL2Q6UWX4 724 aa6.56□□□□□ -1.36
SMCHD1-204ENST00000581226 PWWP2AQ96N64 755 aa6.56□□□□□ -1.36
SMCHD1-204ENST00000581226 TARS2Q9BW92 718 aaKnown RBP6.56□□□□□ -1.36
SMCHD1-204ENST00000581226 PCDH18Q9HCL0 1135 aa6.56□□□□□ -1.36
SMCHD1-204ENST00000581226 EPB41L4AQ9HCS5 686 aaPredicted RBP6.56□□□□□ -1.36
SMCHD1-204ENST00000581226 CABP5Q9NP86 173 aa6.56□□□□□ -1.36
SMCHD1-204ENST00000581226 CADPSQ9ULU8 1353 aa6.56□□□□□ -1.36
SMCHD1-204ENST00000581226 FAM90A27PA6NNH2 459 aa6.55□□□□□ -1.36
SMCHD1-204ENST00000581226 SCDO00767 359 aa6.55□□□□□ -1.36
SMCHD1-204ENST00000581226 NUAK1O60285 661 aa6.55□□□□□ -1.36
SMCHD1-204ENST00000581226 CLASP2O75122 1294 aaKnown RBP6.55□□□□□ -1.36
SMCHD1-204ENST00000581226 POU3F2P20265 443 aaPredicted RBP6.55□□□□□ -1.36
SMCHD1-204ENST00000581226 ARHGAP44Q17R89 818 aa6.55□□□□□ -1.36
SMCHD1-204ENST00000581226 CPZQ66K79 652 aa6.55□□□□□ -1.36
SMCHD1-204ENST00000581226 CIAPIN1Q6FI81 312 aa6.55□□□□□ -1.36
SMCHD1-204ENST00000581226 KRTAP5-3Q6L8H2 238 aa6.55□□□□□ -1.36
SMCHD1-204ENST00000581226 STK32CQ86UX6 486 aa6.55□□□□□ -1.36
SMCHD1-204ENST00000581226 AHI1Q8N157 1196 aa6.55□□□□□ -1.36
SMCHD1-204ENST00000581226 CHST14Q8NCH0 376 aa6.55□□□□□ -1.36
SMCHD1-204ENST00000581226 NOX5Q96PH1 765 aa6.55□□□□□ -1.36
SMCHD1-204ENST00000581226 GORASP1Q9BQQ3 440 aa6.55□□□□□ -1.36
SMCHD1-204ENST00000581226 PMF1-BGLAPU3KQ54 211 aa6.55□□□□□ -1.36
SMCHD1-204ENST00000581226 ACOT7O00154 380 aa6.54□□□□□ -1.36
SMCHD1-204ENST00000581226 CBX4O00257 560 aa6.54□□□□□ -1.36
SMCHD1-204ENST00000581226 TRAF5O00463 557 aa6.54□□□□□ -1.36
SMCHD1-204ENST00000581226 KRT37O76014 449 aa6.54□□□□□ -1.36
SMCHD1-204ENST00000581226 PLA2G1BP04054 148 aaKnown RBP6.54□□□□□ -1.36
SMCHD1-204ENST00000581226 GJA4P35212 333 aa6.54□□□□□ -1.36
SMCHD1-204ENST00000581226 MECP2P51608 486 aaKnown RBP6.54□□□□□ -1.36
SMCHD1-204ENST00000581226 PPM1KQ8N3J5 372 aa6.54□□□□□ -1.36
SMCHD1-204ENST00000581226 ZBTB8AQ96BR9 441 aa6.54□□□□□ -1.36
SMCHD1-204ENST00000581226 TOX2Q96NM4 488 aa6.54□□□□□ -1.36
SMCHD1-204ENST00000581226 C11orf84Q9BUA3 381 aaPredicted RBP6.54□□□□□ -1.36
SMCHD1-204ENST00000581226 MTFR1LQ9H019 292 aa6.54□□□□□ -1.36
SMCHD1-204ENST00000581226 IRF2BPLQ9H1B7 796 aa6.54□□□□□ -1.36
SMCHD1-204ENST00000581226 HSPBP1Q9NZL4 362 aa6.54□□□□□ -1.36
SMCHD1-204ENST00000581226 A0A087X0B3 334 aa6.53□□□□□ -1.36
SMCHD1-204ENST00000581226 PTPDC1A2A3K4 754 aa6.53□□□□□ -1.36
SMCHD1-204ENST00000581226 FAM83GA6ND36 823 aa6.53□□□□□ -1.36
SMCHD1-204ENST00000581226 DBX1A6NMT0 343 aa6.53□□□□□ -1.36
SMCHD1-204ENST00000581226 PDE8AO60658 829 aa6.53□□□□□ -1.36
SMCHD1-204ENST00000581226 HIP1RO75146 1068 aa6.53□□□□□ -1.36
SMCHD1-204ENST00000581226 SMAD4Q13485 552 aaKnown RBP6.53□□□□□ -1.36
SMCHD1-204ENST00000581226 PCBP1Q15365 356 aaKnown RBP eCLIP6.53□□□□□ -1.36
SMCHD1-204ENST00000581226 SEC23AQ15436 765 aa6.53□□□□□ -1.36
SMCHD1-204ENST00000581226 VASNQ6EMK4 673 aa6.53□□□□□ -1.36
SMCHD1-204ENST00000581226 FSTL4Q6MZW2 842 aa6.53□□□□□ -1.36
SMCHD1-204ENST00000581226 PKN3Q6P5Z2 889 aa6.53□□□□□ -1.36
SMCHD1-204ENST00000581226 TMC5Q6UXY8 1006 aa6.53□□□□□ -1.36
SMCHD1-204ENST00000581226 OTOP1Q7RTM1 612 aa6.53□□□□□ -1.36
SMCHD1-204ENST00000581226 NOSTRINQ8IVI9 506 aa6.53□□□□□ -1.36
SMCHD1-204ENST00000581226 FNIP1Q8TF40 1166 aa6.53□□□□□ -1.36
SMCHD1-204ENST00000581226 DACT3Q96B18 629 aaPredicted RBP6.53□□□□□ -1.36
SMCHD1-204ENST00000581226 BOCQ9BWV1 1114 aa6.53□□□□□ -1.36
SMCHD1-204ENST00000581226 RBPJLQ9UBG7 517 aa6.53□□□□□ -1.36
SMCHD1-204ENST00000581226 B4GALT6Q9UBX8 382 aa6.53□□□□□ -1.36
SMCHD1-204ENST00000581226 ZKSCAN5Q9Y2L8 839 aa6.53□□□□□ -1.36
SMCHD1-204ENST00000581226 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.52□□□□□ -1.37
SMCHD1-204ENST00000581226 PRAMEF25A6NGN4 478 aa6.52□□□□□ -1.37
SMCHD1-204ENST00000581226 C4BPAP04003 597 aaKnown RBP6.52□□□□□ -1.37
SMCHD1-204ENST00000581226 ENO2P09104 434 aaPredicted RBP6.52□□□□□ -1.37
SMCHD1-204ENST00000581226 ZBTB48P10074 688 aaPredicted RBP6.52□□□□□ -1.37
SMCHD1-204ENST00000581226 MASP1P48740 699 aa6.52□□□□□ -1.37
SMCHD1-204ENST00000581226 AFF3P51826 1226 aaKnown RBP6.52□□□□□ -1.37
SMCHD1-204ENST00000581226 ITGA1P56199 1179 aa6.52□□□□□ -1.37
SMCHD1-204ENST00000581226 HTRA3P83110 453 aa6.52□□□□□ -1.37
SMCHD1-204ENST00000581226 IRF9Q00978 393 aa6.52□□□□□ -1.37
SMCHD1-204ENST00000581226 TMEM132BQ14DG7 1078 aa6.52□□□□□ -1.37
SMCHD1-204ENST00000581226 CD276Q5ZPR3 534 aa6.52□□□□□ -1.37
SMCHD1-204ENST00000581226 LIPIQ6XZB0 460 aa6.52□□□□□ -1.37
SMCHD1-204ENST00000581226 PROSER1Q86XN7 944 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms