RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 FLT3P36888 993 aa9.28□□□□□ -0.92
SS18-214ENST00000580003 VWA3BQ502W6 1294 aa9.28□□□□□ -0.92
SS18-214ENST00000580003 TMEM209Q96SK2 561 aa9.28□□□□□ -0.92
SS18-214ENST00000580003 RIC8BQ9NVN3 520 aa9.28□□□□□ -0.92
SS18-214ENST00000580003 TMA7Q9Y2S6 64 aaKnown RBP9.28□□□□□ -0.92
SS18-214ENST00000580003 CD2APQ9Y5K6 639 aa9.28□□□□□ -0.92
SS18-214ENST00000580003 GJA4P35212 333 aa9.27□□□□□ -0.93
SS18-214ENST00000580003 C21orf62-AS1Q17RA5 79 aa9.27□□□□□ -0.93
SS18-214ENST00000580003 VASNQ6EMK4 673 aa9.27□□□□□ -0.93
SS18-214ENST00000580003 TMC5Q6UXY8 1006 aa9.27□□□□□ -0.93
SS18-214ENST00000580003 ZNF526Q8TF50 670 aaPredicted RBP9.27□□□□□ -0.93
SS18-214ENST00000580003 CLIC6Q96NY7 704 aa9.27□□□□□ -0.93
SS18-214ENST00000580003 SMURF1Q9HCE7 757 aa9.27□□□□□ -0.93
SS18-214ENST00000580003 NTMQ9P121 344 aa9.27□□□□□ -0.93
SS18-214ENST00000580003 MAGEC2Q9UBF1 373 aaPredicted RBP9.27□□□□□ -0.93
SS18-214ENST00000580003 TBX22Q9Y458 520 aa9.27□□□□□ -0.93
SS18-214ENST00000580003 TNPO3Q9Y5L0 923 aaKnown RBP9.27□□□□□ -0.93
SS18-214ENST00000580003 DNAJC8O75937 253 aaPredicted RBP9.26□□□□□ -0.93
SS18-214ENST00000580003 KCNA6P17658 529 aa9.26□□□□□ -0.93
SS18-214ENST00000580003 PTPN1P18031 435 aaKnown RBP9.26□□□□□ -0.93
SS18-214ENST00000580003 THBS2P35442 1172 aa9.26□□□□□ -0.93
SS18-214ENST00000580003 TMEM177Q53S58 311 aa9.26□□□□□ -0.93
SS18-214ENST00000580003 LCE3BQ5TA77 95 aa9.26□□□□□ -0.93
SS18-214ENST00000580003 ZCCHC8Q6NZY4 707 aaKnown RBP9.26□□□□□ -0.93
SS18-214ENST00000580003 ABHD17CQ6PCB6 329 aa9.26□□□□□ -0.93
SS18-214ENST00000580003 UBE2R2Q712K3 238 aaPredicted RBP9.26□□□□□ -0.93
SS18-214ENST00000580003 OVCH1Q7RTY7 1134 aa9.26□□□□□ -0.93
SS18-214ENST00000580003 C2orf69Q8N8R5 385 aa9.26□□□□□ -0.93
SS18-214ENST00000580003 WRNIP1Q96S55 665 aa9.26□□□□□ -0.93
SS18-214ENST00000580003 SPATA6Q9NWH7 488 aaPredicted RBP9.26□□□□□ -0.93
SS18-214ENST00000580003 SAMD15Q9P1V8 674 aa9.26□□□□□ -0.93
SS18-214ENST00000580003 TLDC2A0PJX2 215 aa9.25□□□□□ -0.93
SS18-214ENST00000580003 SH3D21A4FU49 640 aa9.25□□□□□ -0.93
SS18-214ENST00000580003 KCNK3O14649 394 aa9.25□□□□□ -0.93
SS18-214ENST00000580003 BMP7P18075 431 aa9.25□□□□□ -0.93
SS18-214ENST00000580003 SDSP20132 328 aa9.25□□□□□ -0.93
SS18-214ENST00000580003 TKFCQ3LXA3 575 aa9.25□□□□□ -0.93
SS18-214ENST00000580003 LIPIQ6XZB0 460 aa9.25□□□□□ -0.93
SS18-214ENST00000580003 ADGRG2Q8IZP9 1017 aa9.25□□□□□ -0.93
SS18-214ENST00000580003 FEZ1Q99689 392 aa9.25□□□□□ -0.93
SS18-214ENST00000580003 FAM90A27PA6NNH2 459 aa9.24□□□□□ -0.93
SS18-214ENST00000580003 ACOT7O00154 380 aa9.24□□□□□ -0.93
SS18-214ENST00000580003 ENPP3O14638 875 aa9.24□□□□□ -0.93
SS18-214ENST00000580003 CLASP2O75122 1294 aaKnown RBP9.24□□□□□ -0.93
SS18-214ENST00000580003 CYP7B1O75881 506 aa9.24□□□□□ -0.93
SS18-214ENST00000580003 SARSP49591 514 aaKnown RBP9.24□□□□□ -0.93
SS18-214ENST00000580003 DLX2Q07687 328 aaPredicted RBP9.24□□□□□ -0.93
SS18-214ENST00000580003 ADAM9Q13443 819 aa9.24□□□□□ -0.93
SS18-214ENST00000580003 ZNF460Q14592 562 aa9.24□□□□□ -0.93
SS18-214ENST00000580003 GIMAP6Q6P9H5 292 aa9.24□□□□□ -0.93
SS18-214ENST00000580003 HHIPL2Q6UWX4 724 aa9.24□□□□□ -0.93
SS18-214ENST00000580003 SP8Q8IXZ3 490 aa9.24□□□□□ -0.93
SS18-214ENST00000580003 NINJ1Q92982 152 aa9.24□□□□□ -0.93
SS18-214ENST00000580003 ZSWIM3Q96MP5 696 aa9.24□□□□□ -0.93
SS18-214ENST00000580003 INTS7Q9NVH2 962 aaKnown RBP9.24□□□□□ -0.93
SS18-214ENST00000580003 RBPJLQ9UBG7 517 aa9.24□□□□□ -0.93
SS18-214ENST00000580003 A0A1B0GTL3 188 aa9.23□□□□□ -0.93
SS18-214ENST00000580003 SLC12A8A0AV02 714 aa9.23□□□□□ -0.93
SS18-214ENST00000580003 M0R2C6 588 aa9.23□□□□□ -0.93
SS18-214ENST00000580003 ENO2P09104 434 aaPredicted RBP9.23□□□□□ -0.93
SS18-214ENST00000580003 RPL13P26373 211 aaKnown RBP9.23□□□□□ -0.93
SS18-214ENST00000580003 CD276Q5ZPR3 534 aa9.23□□□□□ -0.93
SS18-214ENST00000580003 CARFQ8N187 725 aa9.23□□□□□ -0.93
SS18-214ENST00000580003 TP53I13Q8NBR0 393 aaPredicted RBP9.23□□□□□ -0.93
SS18-214ENST00000580003 CABP5Q9NP86 173 aa9.23□□□□□ -0.93
SS18-214ENST00000580003 DLL4Q9NR61 685 aa9.23□□□□□ -0.93
SS18-214ENST00000580003 CROTQ9UKG9 612 aa9.23□□□□□ -0.93
SS18-214ENST00000580003 PRAMEF25A6NGN4 478 aa9.22□□□□□ -0.93
SS18-214ENST00000580003 SCDO00767 359 aa9.22□□□□□ -0.93
SS18-214ENST00000580003 TRIM13O60858 407 aa9.22□□□□□ -0.93
SS18-214ENST00000580003 IGSF3O75054 1194 aa9.22□□□□□ -0.93
SS18-214ENST00000580003 HIP1RO75146 1068 aa9.22□□□□□ -0.93
SS18-214ENST00000580003 GLRX3O76003 335 aaKnown RBP9.22□□□□□ -0.93
SS18-214ENST00000580003 SASH1O94885 1247 aa9.22□□□□□ -0.93
SS18-214ENST00000580003 JMJD7P0C870 316 aa9.22□□□□□ -0.93
SS18-214ENST00000580003 KCNC1P48547 511 aa9.22□□□□□ -0.93
SS18-214ENST00000580003 ARHGAP44Q17R89 818 aa9.22□□□□□ -0.93
SS18-214ENST00000580003 TAF7LQ5H9L4 462 aa9.22□□□□□ -0.93
SS18-214ENST00000580003 PIK3R6Q5UE93 754 aa9.22□□□□□ -0.93
SS18-214ENST00000580003 PRAMEF18Q5VWM3 479 aa9.22□□□□□ -0.93
SS18-214ENST00000580003 SPOCD1Q6ZMY3 1216 aa9.22□□□□□ -0.93
SS18-214ENST00000580003 PROSER1Q86XN7 944 aa9.22□□□□□ -0.93
SS18-214ENST00000580003 NIM1KQ8IY84 436 aa9.22□□□□□ -0.93
SS18-214ENST00000580003 ZCCHC4Q9H5U6 513 aa9.22□□□□□ -0.93
SS18-214ENST00000580003 PLAAQ9Y263 795 aa9.22□□□□□ -0.93
SS18-214ENST00000580003 SLURP1P55000 103 aa9.21□□□□□ -0.94
SS18-214ENST00000580003 CFAP100Q494V2 611 aa9.21□□□□□ -0.94
SS18-214ENST00000580003 DTX3Q8N9I9 347 aa9.21□□□□□ -0.94
SS18-214ENST00000580003 MARCH10Q8NA82 808 aaPredicted RBP9.21□□□□□ -0.94
SS18-214ENST00000580003 WNK4Q96J92 1243 aa9.21□□□□□ -0.94
SS18-214ENST00000580003 LUC7LQ9NQ29 371 aaKnown RBP9.21□□□□□ -0.94
SS18-214ENST00000580003 ARHGAP28Q9P2N2 729 aa9.21□□□□□ -0.94
SS18-214ENST00000580003 WASF3Q9UPY6 502 aa9.21□□□□□ -0.94
SS18-214ENST00000580003 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.2□□□□□ -0.94
SS18-214ENST00000580003 PFKPQ01813 784 aa9.2□□□□□ -0.94
SS18-214ENST00000580003 DBPQ10586 325 aaPredicted RBP9.2□□□□□ -0.94
SS18-214ENST00000580003 SKIDA1Q1XH10 827 aa9.2□□□□□ -0.94
SS18-214ENST00000580003 CPZQ66K79 652 aa9.2□□□□□ -0.94
SS18-214ENST00000580003 CDCA2Q69YH5 1023 aaPredicted RBP9.2□□□□□ -0.94
SS18-214ENST00000580003 KIAA0907Q7Z7F0 614 aaPredicted RBP9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms