RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 TRIM59Q8IWR1 403 aa11.15□□□□□ -0.63
VPS53-220ENST00000576149 CCDC155Q8N6L0 562 aa11.15□□□□□ -0.63
VPS53-220ENST00000576149 GPATCH11Q8N954 259 aa11.15□□□□□ -0.63
VPS53-220ENST00000576149 NEK11Q8NG66 645 aa11.15□□□□□ -0.63
VPS53-220ENST00000576149 CSRNP1Q96S65 589 aa11.15□□□□□ -0.63
VPS53-220ENST00000576149 RHOXF2Q9BQY4 288 aa11.15□□□□□ -0.63
VPS53-220ENST00000576149 TANGO6Q9C0B7 1094 aa11.15□□□□□ -0.63
VPS53-220ENST00000576149 PCDHA13Q9Y5I0 950 aa11.15□□□□□ -0.63
VPS53-220ENST00000576149 STK24Q9Y6E0 443 aa11.15□□□□□ -0.63
VPS53-220ENST00000576149 MACROD2A1Z1Q3 448 aa11.14□□□□□ -0.63
VPS53-220ENST00000576149 YDJCA8MPS7 323 aa11.14□□□□□ -0.63
VPS53-220ENST00000576149 USO1O60763 962 aaKnown RBP11.14□□□□□ -0.63
VPS53-220ENST00000576149 ERLIN1O75477 346 aa11.14□□□□□ -0.63
VPS53-220ENST00000576149 KRT18P05783 430 aaKnown RBP11.14□□□□□ -0.63
VPS53-220ENST00000576149 RAD51AP2Q09MP3 1159 aa11.14□□□□□ -0.63
VPS53-220ENST00000576149 NELFCDQ8IXH7 590 aa11.14□□□□□ -0.63
VPS53-220ENST00000576149 SYT2Q8N9I0 419 aaPredicted RBP11.14□□□□□ -0.63
VPS53-220ENST00000576149 SMCR8Q8TEV9 937 aaPredicted RBP11.14□□□□□ -0.63
VPS53-220ENST00000576149 IFIH1Q9BYX4 1025 aaKnown RBP11.14□□□□□ -0.63
VPS53-220ENST00000576149 DNM3Q9UQ16 869 aa11.14□□□□□ -0.63
VPS53-220ENST00000576149 PIK3CDO00329 1044 aa11.14□□□□□ -0.63
VPS53-220ENST00000576149 SRGAP2O75044 1071 aa11.14□□□□□ -0.63
VPS53-220ENST00000576149 CYP3A4P08684 503 aa11.14□□□□□ -0.63
VPS53-220ENST00000576149 PSMC6P62333 389 aa11.14□□□□□ -0.63
VPS53-220ENST00000576149 VSNL1P62760 191 aa11.14□□□□□ -0.63
VPS53-220ENST00000576149 GIT2Q14161 759 aa11.14□□□□□ -0.63
VPS53-220ENST00000576149 SMC1AQ14683 1233 aaKnown RBP11.14□□□□□ -0.63
VPS53-220ENST00000576149 ASTE1Q2TB18 679 aaPredicted RBP11.14□□□□□ -0.63
VPS53-220ENST00000576149 EDRF1Q3B7T1 1238 aa11.14□□□□□ -0.63
VPS53-220ENST00000576149 CACNA2D4Q7Z3S7 1137 aa11.14□□□□□ -0.63
VPS53-220ENST00000576149 SUPT20HQ8NEM7 779 aa11.14□□□□□ -0.63
VPS53-220ENST00000576149 MMS19Q96T76 1030 aa11.14□□□□□ -0.63
VPS53-220ENST00000576149 DEF6Q9H4E7 631 aa11.14□□□□□ -0.63
VPS53-220ENST00000576149 SH2D4AQ9H788 454 aa11.14□□□□□ -0.63
VPS53-220ENST00000576149 CEP72Q9P209 647 aa11.14□□□□□ -0.63
VPS53-220ENST00000576149 HERC5Q9UII4 1024 aaKnown RBP11.14□□□□□ -0.63
VPS53-220ENST00000576149 PRR12Q9ULL5 1215 aa11.14□□□□□ -0.63
VPS53-220ENST00000576149 MSH4O15457 936 aa11.13□□□□□ -0.63
VPS53-220ENST00000576149 AKR1B10O60218 316 aa11.13□□□□□ -0.63
VPS53-220ENST00000576149 NOL4O94818 638 aa11.13□□□□□ -0.63
VPS53-220ENST00000576149 TAL1P17542 331 aaPredicted RBP11.13□□□□□ -0.63
VPS53-220ENST00000576149 HOXA13P31271 388 aaPredicted RBP11.13□□□□□ -0.63
VPS53-220ENST00000576149 HGSNATQ68CP4 663 aa11.13□□□□□ -0.63
VPS53-220ENST00000576149 WDR93Q6P2C0 686 aa11.13□□□□□ -0.63
VPS53-220ENST00000576149 ZNF771Q7L3S4 317 aaPredicted RBP11.13□□□□□ -0.63
VPS53-220ENST00000576149 TRIM58Q8NG06 486 aa11.13□□□□□ -0.63
VPS53-220ENST00000576149 SYN2Q92777 582 aaPredicted RBP11.13□□□□□ -0.63
VPS53-220ENST00000576149 RPGRIP1Q96KN7 1286 aa11.13□□□□□ -0.63
VPS53-220ENST00000576149 GBP3Q9H0R5 595 aa11.13□□□□□ -0.63
VPS53-220ENST00000576149 NUCKS1Q9H1E3 243 aaKnown RBP11.13□□□□□ -0.63
VPS53-220ENST00000576149 ABCB6Q9NP58 842 aa11.13□□□□□ -0.63
VPS53-220ENST00000576149 VAV3Q9UKW4 847 aa11.13□□□□□ -0.63
VPS53-220ENST00000576149 FAM184BQ9ULE4 1060 aa11.13□□□□□ -0.63
VPS53-220ENST00000576149 L1RE1Q9UN81 338 aa11.13□□□□□ -0.63
VPS53-220ENST00000576149 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.13□□□□□ -0.63
VPS53-220ENST00000576149 SSU72P8A0A1W2PR75 194 aa11.13□□□□□ -0.63
VPS53-220ENST00000576149 MEIS1O00470 390 aa11.13□□□□□ -0.63
VPS53-220ENST00000576149 PPIP5K2O43314 1243 aa11.13□□□□□ -0.63
VPS53-220ENST00000576149 USP14P54578 494 aa11.13□□□□□ -0.63
VPS53-220ENST00000576149 CKAP4Q07065 602 aaKnown RBP11.13□□□□□ -0.63
VPS53-220ENST00000576149 PABPC4Q13310 644 aaKnown RBP eCLIP11.13□□□□□ -0.63
VPS53-220ENST00000576149 ADAM9Q13443 819 aa11.13□□□□□ -0.63
VPS53-220ENST00000576149 SPICE1Q8N0Z3 855 aa11.13□□□□□ -0.63
VPS53-220ENST00000576149 MSL3Q8N5Y2 521 aaKnown RBP11.13□□□□□ -0.63
VPS53-220ENST00000576149 ZHX3Q9H4I2 956 aa11.13□□□□□ -0.63
VPS53-220ENST00000576149 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.13□□□□□ -0.63
VPS53-220ENST00000576149 JRKLQ9Y4A0 524 aa11.13□□□□□ -0.63
VPS53-220ENST00000576149 PJA2O43164 708 aa11.12□□□□□ -0.63
VPS53-220ENST00000576149 TACC1O75410 805 aa11.12□□□□□ -0.63
VPS53-220ENST00000576149 CASP5P51878 434 aa11.12□□□□□ -0.63
VPS53-220ENST00000576149 FAM83BQ5T0W9 1011 aa11.12□□□□□ -0.63
VPS53-220ENST00000576149 ZNF772Q68DY9 489 aaPredicted RBP11.12□□□□□ -0.63
VPS53-220ENST00000576149 HDXQ7Z353 690 aa11.12□□□□□ -0.63
VPS53-220ENST00000576149 CYP2W1Q8TAV3 490 aa11.12□□□□□ -0.63
VPS53-220ENST00000576149 REEP2Q9BRK0 252 aa11.12□□□□□ -0.63
VPS53-220ENST00000576149 TRAF3IP3Q9Y228 551 aa11.12□□□□□ -0.63
VPS53-220ENST00000576149 IGLV3-22A0A075B6J6 115 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 SPDYE2BA6NHP3 402 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 RBAK-RBAKDNI3L0D1 243 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 CETN3O15182 167 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 SPDYE6P0CI01 402 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 OAS2P29728 719 aaKnown RBP11.11□□□□□ -0.63
VPS53-220ENST00000576149 ZNF76P36508 570 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 ECE1P42892 770 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 MAGEA1P43355 309 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 STAT2P52630 851 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 TRAF1Q13077 416 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 KIAA1755Q5JYT7 1200 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 EPM2AIP1Q7L775 607 aaPredicted RBP11.11□□□□□ -0.63
VPS53-220ENST00000576149 CAPZA3Q96KX2 299 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 POLR3CQ9BUI4 534 aaPredicted RBP11.11□□□□□ -0.63
VPS53-220ENST00000576149 LSM14BQ9BX40 385 aaKnown RBP11.11□□□□□ -0.63
VPS53-220ENST00000576149 MLXIPQ9HAP2 919 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 ARHGEF10LQ9HCE6 1279 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 NLRC4Q9NPP4 1024 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 JADE2Q9NQC1 790 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 TMOD2Q9NZR1 351 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 TMX2Q9Y320 296 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 CAPN6Q9Y6Q1 641 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 TCP10L2B9ZVM9 353 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms