RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 CHRNA1P02708 482 aa19.52■□□□□ 0.72
CLK3-217ENST00000566126 SLC3A2P08195 630 aaKnown RBP19.52■□□□□ 0.72
CLK3-217ENST00000566126 USH1GQ495M9 461 aa19.52■□□□□ 0.72
CLK3-217ENST00000566126 ANKRD54Q6NXT1 300 aa19.52■□□□□ 0.72
CLK3-217ENST00000566126 CCDC105Q8IYK2 499 aa19.52■□□□□ 0.72
CLK3-217ENST00000566126 CMTR2Q8IYT2 770 aaKnown RBP19.52■□□□□ 0.72
CLK3-217ENST00000566126 CRIPAKQ8N1N5 446 aa19.52■□□□□ 0.72
CLK3-217ENST00000566126 SPATA33Q96N06 139 aa19.52■□□□□ 0.72
CLK3-217ENST00000566126 APOL5Q9BWW9 433 aa19.52■□□□□ 0.72
CLK3-217ENST00000566126 MFSD1Q9H3U5 465 aa19.52■□□□□ 0.72
CLK3-217ENST00000566126 EHMT1Q9H9B1 1298 aa19.52■□□□□ 0.72
CLK3-217ENST00000566126 TSHZ2Q9NRE2 1034 aa19.52■□□□□ 0.72
CLK3-217ENST00000566126 CDH22Q9UJ99 828 aa19.52■□□□□ 0.72
CLK3-217ENST00000566126 ATRXP46100 2492 aa19.52■□□□□ 0.72
CLK3-217ENST00000566126 ZNF316A6NFI3 1004 aaPredicted RBP19.51■□□□□ 0.71
CLK3-217ENST00000566126 C2CD4DB7Z1M9 353 aa19.51■□□□□ 0.71
CLK3-217ENST00000566126 H3BRB1 525 aa19.51■□□□□ 0.71
CLK3-217ENST00000566126 GHRP10912 638 aa19.51■□□□□ 0.71
CLK3-217ENST00000566126 CELF3Q5SZQ8 465 aaKnown RBP19.51■□□□□ 0.71
CLK3-217ENST00000566126 TMEM184AQ6ZMB5 413 aa19.51■□□□□ 0.71
CLK3-217ENST00000566126 LINC01599Q8WXQ3 324 aa19.51■□□□□ 0.71
CLK3-217ENST00000566126 RMDN3Q96TC7 470 aa19.51■□□□□ 0.71
CLK3-217ENST00000566126 CDCA3Q99618 268 aaPredicted RBP19.51■□□□□ 0.71
CLK3-217ENST00000566126 TUT1Q9H6E5 874 aaKnown RBP19.51■□□□□ 0.71
CLK3-217ENST00000566126 NR2E1Q9Y466 385 aa19.51■□□□□ 0.71
CLK3-217ENST00000566126 RNF113AO15541 343 aaKnown RBP19.5■□□□□ 0.71
CLK3-217ENST00000566126 PPFIA3O75145 1194 aa19.5■□□□□ 0.71
CLK3-217ENST00000566126 EIF2AK2P19525 551 aaKnown RBP19.5■□□□□ 0.71
CLK3-217ENST00000566126 AOC1P19801 751 aa19.5■□□□□ 0.71
CLK3-217ENST00000566126 TECP42680 631 aa19.5■□□□□ 0.71
CLK3-217ENST00000566126 LPIN1Q14693 890 aa19.5■□□□□ 0.71
CLK3-217ENST00000566126 ST3GAL2Q16842 350 aa19.5■□□□□ 0.71
CLK3-217ENST00000566126 FTSJ3Q8IY81 847 aaKnown RBP19.5■□□□□ 0.71
CLK3-217ENST00000566126 KBTBD3Q8NAB2 608 aa19.5■□□□□ 0.71
CLK3-217ENST00000566126 FLCNQ8NFG4 579 aa19.5■□□□□ 0.71
CLK3-217ENST00000566126 MICAL1Q8TDZ2 1067 aa19.5■□□□□ 0.71
CLK3-217ENST00000566126 SEMA4AQ9H3S1 761 aa19.5■□□□□ 0.71
CLK3-217ENST00000566126 SETD4Q9NVD3 440 aa19.5■□□□□ 0.71
CLK3-217ENST00000566126 GGPS1O95749 300 aa19.49■□□□□ 0.71
CLK3-217ENST00000566126 ASGR2P07307 311 aa19.49■□□□□ 0.71
CLK3-217ENST00000566126 PDHBP11177 359 aa19.49■□□□□ 0.71
CLK3-217ENST00000566126 NPR3P17342 541 aa19.49■□□□□ 0.71
CLK3-217ENST00000566126 ADAM17P78536 824 aa19.49■□□□□ 0.71
CLK3-217ENST00000566126 SP2Q02086 613 aa19.49■□□□□ 0.71
CLK3-217ENST00000566126 PAN2Q504Q3 1202 aaKnown RBP19.49■□□□□ 0.71
CLK3-217ENST00000566126 TMEM47Q9BQJ4 181 aa19.49■□□□□ 0.71
CLK3-217ENST00000566126 SUPT16HQ9Y5B9 1047 aaKnown RBP19.49■□□□□ 0.71
CLK3-217ENST00000566126 FSD2A1L4K1 749 aa19.48■□□□□ 0.71
CLK3-217ENST00000566126 LGALS2P05162 132 aa19.48■□□□□ 0.71
CLK3-217ENST00000566126 NR3C2P08235 984 aa19.48■□□□□ 0.71
CLK3-217ENST00000566126 ERVFC1P60507 584 aa19.48■□□□□ 0.71
CLK3-217ENST00000566126 CTDSPL2Q05D32 466 aa19.48■□□□□ 0.71
CLK3-217ENST00000566126 ARHGEF16Q5VV41 709 aa19.48■□□□□ 0.71
CLK3-217ENST00000566126 DTWD2Q8NBA8 298 aa19.48■□□□□ 0.71
CLK3-217ENST00000566126 NACAP1Q9BZK3 213 aa19.48■□□□□ 0.71
CLK3-217ENST00000566126 MAF1Q9H063 256 aa19.48■□□□□ 0.71
CLK3-217ENST00000566126 NAPBQ9H115 298 aa19.48■□□□□ 0.71
CLK3-217ENST00000566126 R4GN57 208 aa19.48■□□□□ 0.71
CLK3-217ENST00000566126 FANCMQ8IYD8 2048 aa19.47■□□□□ 0.71
CLK3-217ENST00000566126 KAT6AQ92794 2004 aa19.47■□□□□ 0.71
CLK3-217ENST00000566126 RAB11FIP3O75154 756 aa19.47■□□□□ 0.71
CLK3-217ENST00000566126 ZNF543Q08ER8 600 aa19.47■□□□□ 0.71
CLK3-217ENST00000566126 MGAT3Q09327 533 aa19.47■□□□□ 0.71
CLK3-217ENST00000566126 RSPO4Q2I0M5 234 aaPredicted RBP19.47■□□□□ 0.71
CLK3-217ENST00000566126 RTN4RL1Q86UN2 441 aaPredicted RBP19.47■□□□□ 0.71
CLK3-217ENST00000566126 CYP2W1Q8TAV3 490 aa19.47■□□□□ 0.71
CLK3-217ENST00000566126 POMKQ9H5K3 350 aa19.47■□□□□ 0.71
CLK3-217ENST00000566126 PXMP2Q9NR77 195 aa19.47■□□□□ 0.71
CLK3-217ENST00000566126 FSCN2O14926 492 aa19.46■□□□□ 0.71
CLK3-217ENST00000566126 RANBP6O60518 1105 aaKnown RBP19.46■□□□□ 0.71
CLK3-217ENST00000566126 TOP1P11387 765 aaKnown RBP19.46■□□□□ 0.71
CLK3-217ENST00000566126 UBA1P22314 1058 aaKnown RBP19.46■□□□□ 0.71
CLK3-217ENST00000566126 GATMP50440 423 aa19.46■□□□□ 0.71
CLK3-217ENST00000566126 UBE3AQ05086 875 aa19.46■□□□□ 0.71
CLK3-217ENST00000566126 SIRT2Q8IXJ6 389 aa19.46■□□□□ 0.71
CLK3-217ENST00000566126 DCLK2Q8N568 766 aa19.46■□□□□ 0.71
CLK3-217ENST00000566126 SEC62Q99442 399 aaKnown RBP19.46■□□□□ 0.71
CLK3-217ENST00000566126 BCAS3Q9H6U6 928 aa19.46■□□□□ 0.71
CLK3-217ENST00000566126 SRGAP2BP0DMP2 458 aa19.45■□□□□ 0.7
CLK3-217ENST00000566126 GNAT1P11488 350 aa19.45■□□□□ 0.7
CLK3-217ENST00000566126 NPAS4Q8IUM7 802 aa19.45■□□□□ 0.7
CLK3-217ENST00000566126 RASGRP4Q8TDF6 673 aa19.45■□□□□ 0.7
CLK3-217ENST00000566126 LMBR1Q8WVP7 490 aa19.45■□□□□ 0.7
CLK3-217ENST00000566126 CPVLQ9H3G5 476 aa19.45■□□□□ 0.7
CLK3-217ENST00000566126 FNDC1Q4ZHG4 1894 aaPredicted RBP19.45■□□□□ 0.7
CLK3-217ENST00000566126 DOCK5Q9H7D0 1870 aa19.45■□□□□ 0.7
CLK3-217ENST00000566126 ZFYP08048 801 aaPredicted RBP19.44■□□□□ 0.7
CLK3-217ENST00000566126 SNHG28P0DPA3 235 aa19.44■□□□□ 0.7
CLK3-217ENST00000566126 HOXB8P17481 243 aaPredicted RBP19.44■□□□□ 0.7
CLK3-217ENST00000566126 ARHGAP4P98171 946 aa19.44■□□□□ 0.7
CLK3-217ENST00000566126 FBXO47Q5MNV8 452 aa19.44■□□□□ 0.7
CLK3-217ENST00000566126 LLGL2Q6P1M3 1020 aa19.44■□□□□ 0.7
CLK3-217ENST00000566126 RUFY4Q6ZNE9 571 aa19.44■□□□□ 0.7
CLK3-217ENST00000566126 GPKOWQ92917 476 aaPredicted RBP eCLIP19.44■□□□□ 0.7
CLK3-217ENST00000566126 HINFPQ9BQA5 517 aa19.44■□□□□ 0.7
CLK3-217ENST00000566126 MYH6P13533 1939 aa19.44■□□□□ 0.7
CLK3-217ENST00000566126 ABCB11O95342 1321 aa19.44■□□□□ 0.7
CLK3-217ENST00000566126 FOXP2O15409 715 aa19.43■□□□□ 0.7
CLK3-217ENST00000566126 KCNV1Q6PIU1 500 aa19.43■□□□□ 0.7
CLK3-217ENST00000566126 RUBCNQ92622 972 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 188.9 ms