RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 RBM25P49756 843 aaKnown RBP15.23■□□□□ 0.03
CLK3-216ENST00000564468 USP11P51784 963 aa15.23■□□□□ 0.03
CLK3-216ENST00000564468 CCL23P55773 120 aa15.23■□□□□ 0.03
CLK3-216ENST00000564468 SMAD3P84022 425 aaKnown RBP15.23■□□□□ 0.03
CLK3-216ENST00000564468 ME3Q16798 604 aa15.23■□□□□ 0.03
CLK3-216ENST00000564468 UTP14CQ5TAP6 766 aaKnown RBP15.23■□□□□ 0.03
CLK3-216ENST00000564468 CYP2W1Q8TAV3 490 aa15.23■□□□□ 0.03
CLK3-216ENST00000564468 CRYGNQ8WXF5 182 aa15.23■□□□□ 0.03
CLK3-216ENST00000564468 TNPO1Q92973 898 aaKnown RBP15.23■□□□□ 0.03
CLK3-216ENST00000564468 RNPC3Q96LT9 517 aaKnown RBP15.23■□□□□ 0.03
CLK3-216ENST00000564468 MTIF3Q9H2K0 278 aaKnown RBP15.23■□□□□ 0.03
CLK3-216ENST00000564468 AGO4Q9HCK5 861 aaKnown RBP15.23■□□□□ 0.03
CLK3-216ENST00000564468 PRDM6Q9NQX0 595 aa15.23■□□□□ 0.03
CLK3-216ENST00000564468 PKD2L1Q9P0L9 805 aa15.23■□□□□ 0.03
CLK3-216ENST00000564468 TCEAL9Q9UHQ7 104 aa15.23■□□□□ 0.03
CLK3-216ENST00000564468 LIMCH1Q9UPQ0 1083 aa15.23■□□□□ 0.03
CLK3-216ENST00000564468 TTC28Q96AY4 2481 aa15.23■□□□□ 0.03
CLK3-216ENST00000564468 C17orf102A2RUQ5 167 aa15.22■□□□□ 0.03
CLK3-216ENST00000564468 PARNO95453 639 aaKnown RBP15.22■□□□□ 0.03
CLK3-216ENST00000564468 ARP10275 920 aa15.22■□□□□ 0.03
CLK3-216ENST00000564468 CIITAP33076 1130 aa15.22■□□□□ 0.03
CLK3-216ENST00000564468 PTK7Q13308 1070 aa15.22■□□□□ 0.03
CLK3-216ENST00000564468 RASGRP4Q8TDF6 673 aa15.22■□□□□ 0.03
CLK3-216ENST00000564468 PPP1R13LQ8WUF5 828 aa15.22■□□□□ 0.03
CLK3-216ENST00000564468 ZSCAN31Q96LW9 406 aaPredicted RBP15.22■□□□□ 0.03
CLK3-216ENST00000564468 SMARCAD1Q9H4L7 1026 aa15.22■□□□□ 0.03
CLK3-216ENST00000564468 AZI2Q9H6S1 392 aa15.22■□□□□ 0.03
CLK3-216ENST00000564468 TBC1D22BQ9NU19 505 aa15.22■□□□□ 0.03
CLK3-216ENST00000564468 ERAP1Q9NZ08 941 aa15.22■□□□□ 0.03
CLK3-216ENST00000564468 UMODL1Q5DID0 1318 aa15.21■□□□□ 0.03
CLK3-216ENST00000564468 SPTBN5Q9NRC6 3674 aaKnown RBP15.21■□□□□ 0.03
CLK3-216ENST00000564468 GSTTP1A0A1W2PQM5 241 aa15.21■□□□□ 0.03
CLK3-216ENST00000564468 FAM86B1E9PN63 330 aa15.21■□□□□ 0.03
CLK3-216ENST00000564468 FGBP02675 491 aa15.21■□□□□ 0.03
CLK3-216ENST00000564468 FAM86B2P0C5J1 330 aa15.21■□□□□ 0.03
CLK3-216ENST00000564468 EPHB4P54760 987 aa15.21■□□□□ 0.03
CLK3-216ENST00000564468 RBL2Q08999 1139 aa15.21■□□□□ 0.03
CLK3-216ENST00000564468 C9orf50Q5SZB4 431 aa15.21■□□□□ 0.03
CLK3-216ENST00000564468 KRT25Q7Z3Z0 450 aa15.21■□□□□ 0.03
CLK3-216ENST00000564468 NECAB1Q8N987 351 aa15.21■□□□□ 0.03
CLK3-216ENST00000564468 AFAP1L1Q8TED9 768 aa15.21■□□□□ 0.03
CLK3-216ENST00000564468 GLG1Q92896 1179 aa15.21■□□□□ 0.03
CLK3-216ENST00000564468 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.21■□□□□ 0.034e-6■■■□□ 19.2
CLK3-216ENST00000564468 ZNF577Q9BSK1 485 aa15.21■□□□□ 0.03
CLK3-216ENST00000564468 PHF20Q9BVI0 1012 aa15.21■□□□□ 0.03
CLK3-216ENST00000564468 WNT8AQ9H1J5 351 aa15.21■□□□□ 0.03
CLK3-216ENST00000564468 BRMS1Q9HCU9 246 aa15.21■□□□□ 0.03
CLK3-216ENST00000564468 TET1Q8NFU7 2136 aa15.2■□□□□ 0.02
CLK3-216ENST00000564468 EMSYQ7Z589 1322 aa15.2■□□□□ 0.02
CLK3-216ENST00000564468 IGLV3-22A0A075B6J6 115 aa15.2■□□□□ 0.02
CLK3-216ENST00000564468 IPO5O00410 1097 aaKnown RBP15.2■□□□□ 0.02
CLK3-216ENST00000564468 CTDNEP1O95476 244 aa15.2■□□□□ 0.02
CLK3-216ENST00000564468 IQCF3P0C7M6 154 aa15.2■□□□□ 0.02
CLK3-216ENST00000564468 SMIM10L2AP0DMW4 78 aa15.2■□□□□ 0.02
CLK3-216ENST00000564468 SMIM10L2BP0DMW5 78 aa15.2■□□□□ 0.02
CLK3-216ENST00000564468 FOSL2P15408 326 aa15.2■□□□□ 0.02
CLK3-216ENST00000564468 ACTR2P61160 394 aa15.2■□□□□ 0.02
CLK3-216ENST00000564468 TRIM29Q14134 588 aa15.2■□□□□ 0.02
CLK3-216ENST00000564468 NONOQ15233 471 aaKnown RBP eCLIP15.2■□□□□ 0.02
CLK3-216ENST00000564468 RABEP1Q15276 862 aa15.2■□□□□ 0.02
CLK3-216ENST00000564468 PRR16Q569H4 304 aa15.2■□□□□ 0.02
CLK3-216ENST00000564468 TMEM240Q5SV17 173 aa15.2■□□□□ 0.02
CLK3-216ENST00000564468 TBCKQ8TEA7 893 aa15.2■□□□□ 0.02
CLK3-216ENST00000564468 ATP6V0A1Q93050 837 aa15.2■□□□□ 0.02
CLK3-216ENST00000564468 AIFM3Q96NN9 605 aa15.2■□□□□ 0.02
CLK3-216ENST00000564468 RNPEPQ9H4A4 650 aa15.2■□□□□ 0.02
CLK3-216ENST00000564468 SH2B1Q9NRF2 756 aaPredicted RBP15.2■□□□□ 0.02
CLK3-216ENST00000564468 CDH23Q9H251 3354 aa15.19■□□□□ 0.02
CLK3-216ENST00000564468 NRCAMQ92823 1304 aa15.19■□□□□ 0.02
CLK3-216ENST00000564468 TMEM265A0A087WTH1 108 aa15.19■□□□□ 0.02
CLK3-216ENST00000564468 CCDC194A0A1B0GVG4 234 aa15.19■□□□□ 0.02
CLK3-216ENST00000564468 M0R2N6 131 aa15.19■□□□□ 0.02
CLK3-216ENST00000564468 ADAMTS3O15072 1205 aa15.19■□□□□ 0.02
CLK3-216ENST00000564468 ST18O60284 1047 aa15.19■□□□□ 0.02
CLK3-216ENST00000564468 LGR5O75473 907 aa15.19■□□□□ 0.02
CLK3-216ENST00000564468 LARGE1O95461 756 aa15.19■□□□□ 0.02
CLK3-216ENST00000564468 ACTN1P12814 892 aa15.19■□□□□ 0.02
CLK3-216ENST00000564468 SELPP16109 830 aa15.19■□□□□ 0.02
CLK3-216ENST00000564468 HOXC8P31273 242 aa15.19■□□□□ 0.02
CLK3-216ENST00000564468 SLC26A2P50443 739 aa15.19■□□□□ 0.02
CLK3-216ENST00000564468 ITGB3BPQ13352 177 aaPredicted RBP15.19■□□□□ 0.02
CLK3-216ENST00000564468 MOXD1Q6UVY6 613 aa15.19■□□□□ 0.02
CLK3-216ENST00000564468 ZNF365Q70YC5 407 aa15.19■□□□□ 0.02
CLK3-216ENST00000564468 PLPPR4Q7Z2D5 763 aa15.19■□□□□ 0.02
CLK3-216ENST00000564468 TRIM50Q86XT4 487 aa15.19■□□□□ 0.02
CLK3-216ENST00000564468 NSUN7Q8NE18 718 aaKnown RBP15.19■□□□□ 0.02
CLK3-216ENST00000564468 SCLYQ96I15 445 aa15.19■□□□□ 0.02
CLK3-216ENST00000564468 NAP1L4Q99733 375 aaKnown RBP15.19■□□□□ 0.02
CLK3-216ENST00000564468 LLPHQ9BRT6 129 aaKnown RBP15.19■□□□□ 0.02
CLK3-216ENST00000564468 KCNJ14Q9UNX9 436 aa15.19■□□□□ 0.02
CLK3-216ENST00000564468 MYO9BQ13459 2157 aa15.19■□□□□ 0.02
CLK3-216ENST00000564468 EVPLQ92817 2033 aa15.19■□□□□ 0.02
CLK3-216ENST00000564468 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.18■□□□□ 0.02
CLK3-216ENST00000564468 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.18■□□□□ 0.02
CLK3-216ENST00000564468 CAND2O75155 1236 aa15.18■□□□□ 0.02
CLK3-216ENST00000564468 ATG7O95352 703 aa15.18■□□□□ 0.02
CLK3-216ENST00000564468 ACRP10323 421 aa15.18■□□□□ 0.02
CLK3-216ENST00000564468 CKBP12277 381 aa15.18■□□□□ 0.02
CLK3-216ENST00000564468 STAT5BP51692 787 aa15.18■□□□□ 0.02
CLK3-216ENST00000564468 KRT76Q01546 638 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms