RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 DEFB123Q8N688 67 aa6.89□□□□□ -1.31
VPS35-204ENST00000563884 ANKS4BQ8N8V4 417 aa6.89□□□□□ -1.31
VPS35-204ENST00000563884 INTS4Q96HW7 963 aaKnown RBP6.89□□□□□ -1.31
VPS35-204ENST00000563884 KIF2CQ99661 725 aa6.89□□□□□ -1.31
VPS35-204ENST00000563884 HTATIP2Q9BUP3 242 aa6.89□□□□□ -1.31
VPS35-204ENST00000563884 IRF2BPLQ9H1B7 796 aa6.89□□□□□ -1.31
VPS35-204ENST00000563884 EHMT1Q9H9B1 1298 aa6.89□□□□□ -1.31
VPS35-204ENST00000563884 YBX2Q9Y2T7 364 aaKnown RBP6.89□□□□□ -1.31
VPS35-204ENST00000563884 TRIM17Q9Y577 477 aa6.89□□□□□ -1.31
VPS35-204ENST00000563884 ZNF609O15014 1411 aa6.89□□□□□ -1.31
VPS35-204ENST00000563884 H7C1D1 291 aa6.88□□□□□ -1.31
VPS35-204ENST00000563884 DNAJA2O60884 412 aa6.88□□□□□ -1.31
VPS35-204ENST00000563884 INHBBP09529 407 aa6.88□□□□□ -1.31
VPS35-204ENST00000563884 ZNF76P36508 570 aa6.88□□□□□ -1.31
VPS35-204ENST00000563884 CRKP46108 304 aa6.88□□□□□ -1.31
VPS35-204ENST00000563884 FKBP1BP68106 108 aa6.88□□□□□ -1.31
VPS35-204ENST00000563884 CWF19L2Q2TBE0 894 aaKnown RBP6.88□□□□□ -1.31
VPS35-204ENST00000563884 KRT26Q7Z3Y9 468 aa6.88□□□□□ -1.31
VPS35-204ENST00000563884 RGS22Q8NE09 1264 aa6.88□□□□□ -1.31
VPS35-204ENST00000563884 DPF3Q92784 378 aa6.88□□□□□ -1.31
VPS35-204ENST00000563884 ERO1AQ96HE7 468 aa6.88□□□□□ -1.31
VPS35-204ENST00000563884 NT5C1AQ9BXI3 368 aa6.88□□□□□ -1.31
VPS35-204ENST00000563884 TMX4Q9H1E5 349 aaPredicted RBP6.88□□□□□ -1.31
VPS35-204ENST00000563884 VPS33BQ9H267 617 aa6.88□□□□□ -1.31
VPS35-204ENST00000563884 BRCA2P51587 3418 aa6.88□□□□□ -1.31
VPS35-204ENST00000563884 TAF1P21675 1872 aa6.87□□□□□ -1.31
VPS35-204ENST00000563884 PIEZO1Q92508 2521 aa6.87□□□□□ -1.31
VPS35-204ENST00000563884 SNED1Q8TER0 1413 aa6.87□□□□□ -1.31
VPS35-204ENST00000563884 ROCK2O75116 1388 aaKnown RBP6.87□□□□□ -1.31
VPS35-204ENST00000563884 NPC1L1Q9UHC9 1359 aa6.87□□□□□ -1.31
VPS35-204ENST00000563884 CYP19A1P11511 503 aaPredicted RBP6.87□□□□□ -1.31
VPS35-204ENST00000563884 RPL10P27635 214 aaKnown RBP6.87□□□□□ -1.31
VPS35-204ENST00000563884 GALK1P51570 392 aa6.87□□□□□ -1.31
VPS35-204ENST00000563884 DLG4P78352 724 aa6.87□□□□□ -1.31
VPS35-204ENST00000563884 TNIP1Q15025 636 aa6.87□□□□□ -1.31
VPS35-204ENST00000563884 SNX17Q15036 470 aa6.87□□□□□ -1.31
VPS35-204ENST00000563884 ARHGEF6Q15052 776 aa6.87□□□□□ -1.31
VPS35-204ENST00000563884 SLC4A8Q2Y0W8 1093 aa6.87□□□□□ -1.31
VPS35-204ENST00000563884 C1orf141Q5JVX7 400 aa6.87□□□□□ -1.31
VPS35-204ENST00000563884 TBC1D9BQ66K14 1250 aa6.87□□□□□ -1.31
VPS35-204ENST00000563884 USP48Q86UV5 1035 aa6.87□□□□□ -1.31
VPS35-204ENST00000563884 SLITRK4Q8IW52 837 aa6.87□□□□□ -1.31
VPS35-204ENST00000563884 DNAJC10Q8IXB1 793 aa6.87□□□□□ -1.31
VPS35-204ENST00000563884 REXO1Q8N1G1 1221 aaKnown RBP6.87□□□□□ -1.31
VPS35-204ENST00000563884 DCPSQ96C86 337 aaKnown RBP6.87□□□□□ -1.31
VPS35-204ENST00000563884 SNX27Q96L92 541 aa6.87□□□□□ -1.31
VPS35-204ENST00000563884 PUS7Q96PZ0 661 aaKnown RBP6.87□□□□□ -1.31
VPS35-204ENST00000563884 PRO3102Q9H379 93 aa6.87□□□□□ -1.31
VPS35-204ENST00000563884 BRMS1Q9HCU9 246 aa6.87□□□□□ -1.31
VPS35-204ENST00000563884 MYOCOSA0A1B0GUC4 107 aa6.86□□□□□ -1.31
VPS35-204ENST00000563884 SLC22A31A6NKX4 558 aa6.86□□□□□ -1.31
VPS35-204ENST00000563884 TLR3O15455 904 aaKnown RBP6.86□□□□□ -1.31
VPS35-204ENST00000563884 PEX10O60683 326 aa6.86□□□□□ -1.31
VPS35-204ENST00000563884 SEMA7AO75326 666 aa6.86□□□□□ -1.31
VPS35-204ENST00000563884 RECKO95980 971 aa6.86□□□□□ -1.31
VPS35-204ENST00000563884 GMPSP49915 693 aaPredicted RBP6.86□□□□□ -1.31
VPS35-204ENST00000563884 AMOTQ4VCS5 1084 aa6.86□□□□□ -1.31
VPS35-204ENST00000563884 PLEKHO1Q53GL0 409 aaPredicted RBP6.86□□□□□ -1.31
VPS35-204ENST00000563884 OTOP1Q7RTM1 612 aa6.86□□□□□ -1.31
VPS35-204ENST00000563884 NBPF5PQ86XG9 351 aaPredicted RBP6.86□□□□□ -1.31
VPS35-204ENST00000563884 SIRT2Q8IXJ6 389 aa6.86□□□□□ -1.31
VPS35-204ENST00000563884 EAF1Q96JC9 268 aaPredicted RBP6.86□□□□□ -1.31
VPS35-204ENST00000563884 SLC12A5Q9H2X9 1139 aa6.86□□□□□ -1.31
VPS35-204ENST00000563884 UBP1Q9NZI7 540 aa6.86□□□□□ -1.31
VPS35-204ENST00000563884 EBF1Q9UH73 591 aa6.86□□□□□ -1.31
VPS35-204ENST00000563884 RAPGEFL1Q9UHV5 662 aa6.86□□□□□ -1.31
VPS35-204ENST00000563884 ZMYM5Q9UJ78 669 aa6.86□□□□□ -1.31
VPS35-204ENST00000563884 ZBTB1Q9Y2K1 713 aa6.86□□□□□ -1.31
VPS35-204ENST00000563884 PTPN22Q9Y2R2 807 aa6.86□□□□□ -1.31
VPS35-204ENST00000563884 RPTORQ8N122 1335 aa6.85□□□□□ -1.31
VPS35-204ENST00000563884 NCOR1O75376 2440 aa6.85□□□□□ -1.31
VPS35-204ENST00000563884 ST20-MTHFSA0A0A6YYL1 179 aa6.85□□□□□ -1.31
VPS35-204ENST00000563884 SSU72P8A0A1W2PR75 194 aa6.85□□□□□ -1.31
VPS35-204ENST00000563884 PPIP5K2O43314 1243 aa6.85□□□□□ -1.31
VPS35-204ENST00000563884 PSPNO60542 156 aa6.85□□□□□ -1.31
VPS35-204ENST00000563884 STARD3NLO95772 234 aa6.85□□□□□ -1.31
VPS35-204ENST00000563884 TM4SF4P48230 202 aa6.85□□□□□ -1.31
VPS35-204ENST00000563884 MTHFSP49914 203 aa6.85□□□□□ -1.31
VPS35-204ENST00000563884 NMIQ13287 307 aaPredicted RBP6.85□□□□□ -1.31
VPS35-204ENST00000563884 SLC9C1Q4G0N8 1177 aa6.85□□□□□ -1.31
VPS35-204ENST00000563884 ZNF530Q6P9A1 599 aaPredicted RBP6.85□□□□□ -1.31
VPS35-204ENST00000563884 SUPT20HQ8NEM7 779 aa6.85□□□□□ -1.31
VPS35-204ENST00000563884 ENOX1Q8TC92 643 aaKnown RBP6.85□□□□□ -1.31
VPS35-204ENST00000563884 VWCEQ96DN2 955 aa6.85□□□□□ -1.31
VPS35-204ENST00000563884 ZNF552Q9H707 407 aaPredicted RBP6.85□□□□□ -1.31
VPS35-204ENST00000563884 CNOT6Q9ULM6 557 aaKnown RBP6.85□□□□□ -1.31
VPS35-204ENST00000563884 ZNRF3Q9ULT6 936 aa6.85□□□□□ -1.31
VPS35-204ENST00000563884 PCDHB14Q9Y5E9 798 aa6.85□□□□□ -1.31
VPS35-204ENST00000563884 LAMA3Q16787 3333 aa6.84□□□□□ -1.31
VPS35-204ENST00000563884 TEX51A0A1B0GUA7 166 aa6.84□□□□□ -1.31
VPS35-204ENST00000563884 B8ZZF3 427 aa6.84□□□□□ -1.31
VPS35-204ENST00000563884 SCAMP3O14828 347 aaKnown RBP6.84□□□□□ -1.31
VPS35-204ENST00000563884 RGS13O14921 159 aa6.84□□□□□ -1.31
VPS35-204ENST00000563884 RAG1P15918 1043 aa6.84□□□□□ -1.31
VPS35-204ENST00000563884 FBLN1P23142 703 aa6.84□□□□□ -1.31
VPS35-204ENST00000563884 CANXP27824 592 aaKnown RBP6.84□□□□□ -1.31
VPS35-204ENST00000563884 EIF5P55010 431 aaKnown RBP6.84□□□□□ -1.31
VPS35-204ENST00000563884 RNF4P78317 190 aa6.84□□□□□ -1.31
VPS35-204ENST00000563884 SLC14A2Q15849 920 aa6.84□□□□□ -1.31
VPS35-204ENST00000563884 ARSHQ5FYA8 562 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms