RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 WDR66Q8TBY9 1149 aa6.69□□□□□ -1.34
VPS13C-210ENST00000561258 TSR2Q969E8 191 aaKnown RBP6.69□□□□□ -1.34
VPS13C-210ENST00000561258 CYP26B1Q9NR63 512 aa6.69□□□□□ -1.34
VPS13C-210ENST00000561258 GEMIN8Q9NWZ8 242 aaKnown RBP6.69□□□□□ -1.34
VPS13C-210ENST00000561258 ASXL2Q76L83 1435 aa6.68□□□□□ -1.34
VPS13C-210ENST00000561258 SH3D21A4FU49 640 aa6.68□□□□□ -1.34
VPS13C-210ENST00000561258 TSPAN6O43657 245 aa6.68□□□□□ -1.34
VPS13C-210ENST00000561258 BRINP1O60477 761 aa6.68□□□□□ -1.34
VPS13C-210ENST00000561258 CPP00450 1065 aa6.68□□□□□ -1.34
VPS13C-210ENST00000561258 JMJD7P0C870 316 aa6.68□□□□□ -1.34
VPS13C-210ENST00000561258 NCAM1P13591 858 aa6.68□□□□□ -1.34
VPS13C-210ENST00000561258 IFNGR1P15260 489 aa6.68□□□□□ -1.34
VPS13C-210ENST00000561258 CNR2P34972 360 aa6.68□□□□□ -1.34
VPS13C-210ENST00000561258 NOP2P46087 812 aaKnown RBP6.68□□□□□ -1.34
VPS13C-210ENST00000561258 KCNJ6P48051 423 aa6.68□□□□□ -1.34
VPS13C-210ENST00000561258 MTMR1Q13613 665 aa6.68□□□□□ -1.34
VPS13C-210ENST00000561258 PRSS53Q2L4Q9 553 aa6.68□□□□□ -1.34
VPS13C-210ENST00000561258 DENND5AQ6IQ26 1287 aa6.68□□□□□ -1.34
VPS13C-210ENST00000561258 STYK1Q6J9G0 422 aa6.68□□□□□ -1.34
VPS13C-210ENST00000561258 ALG3Q92685 438 aa6.68□□□□□ -1.34
VPS13C-210ENST00000561258 MAGEB10Q96LZ2 347 aaPredicted RBP6.68□□□□□ -1.34
VPS13C-210ENST00000561258 ZDHHC15Q96MV8 337 aa6.68□□□□□ -1.34
VPS13C-210ENST00000561258 PTCHD1Q96NR3 888 aa6.68□□□□□ -1.34
VPS13C-210ENST00000561258 RNF38Q9H0F5 515 aa6.68□□□□□ -1.34
VPS13C-210ENST00000561258 SLC5A4Q9NY91 659 aa6.68□□□□□ -1.34
VPS13C-210ENST00000561258 MYRFQ9Y2G1 1151 aa6.68□□□□□ -1.34
VPS13C-210ENST00000561258 CD3EP07766 207 aa6.67□□□□□ -1.34
VPS13C-210ENST00000561258 BPIP17213 487 aa6.67□□□□□ -1.34
VPS13C-210ENST00000561258 FLT3P36888 993 aa6.67□□□□□ -1.34
VPS13C-210ENST00000561258 AMPD2Q01433 879 aa6.67□□□□□ -1.34
VPS13C-210ENST00000561258 ZNF827Q17R98 1081 aa6.67□□□□□ -1.34
VPS13C-210ENST00000561258 CFAP100Q494V2 611 aa6.67□□□□□ -1.34
VPS13C-210ENST00000561258 SPATS2Q86XZ4 545 aaKnown RBP6.67□□□□□ -1.34
VPS13C-210ENST00000561258 CCDC146Q8IYE0 955 aa6.67□□□□□ -1.34
VPS13C-210ENST00000561258 KREMEN2Q8NCW0 462 aa6.67□□□□□ -1.34
VPS13C-210ENST00000561258 NOX5Q96PH1 765 aa6.67□□□□□ -1.34
VPS13C-210ENST00000561258 ORAI3Q9BRQ5 295 aa6.67□□□□□ -1.34
VPS13C-210ENST00000561258 SF3B6Q9Y3B4 125 aaKnown RBP6.67□□□□□ -1.34
VPS13C-210ENST00000561258 TRAF6Q9Y4K3 522 aa6.67□□□□□ -1.34
VPS13C-210ENST00000561258 B4E1Z4 1266 aa6.66□□□□□ -1.34
VPS13C-210ENST00000561258 PRC1O43663 620 aa6.66□□□□□ -1.34
VPS13C-210ENST00000561258 NOBOXO60393 691 aa6.66□□□□□ -1.34
VPS13C-210ENST00000561258 VAMP4O75379 141 aa6.66□□□□□ -1.34
VPS13C-210ENST00000561258 CRTAMO95727 393 aa6.66□□□□□ -1.34
VPS13C-210ENST00000561258 ECI1P42126 302 aa6.66□□□□□ -1.34
VPS13C-210ENST00000561258 NEK2P51955 445 aa6.66□□□□□ -1.34
VPS13C-210ENST00000561258 CORO7P57737 925 aa6.66□□□□□ -1.34
VPS13C-210ENST00000561258 CDCA2Q69YH5 1023 aaPredicted RBP6.66□□□□□ -1.34
VPS13C-210ENST00000561258 ZCCHC8Q6NZY4 707 aaKnown RBP6.66□□□□□ -1.34
VPS13C-210ENST00000561258 USP53Q70EK8 1073 aa6.66□□□□□ -1.34
VPS13C-210ENST00000561258 B3GNT8Q7Z7M8 397 aa6.66□□□□□ -1.34
VPS13C-210ENST00000561258 CARFQ8N187 725 aa6.66□□□□□ -1.34
VPS13C-210ENST00000561258 DCAF4Q8WV16 495 aa6.66□□□□□ -1.34
VPS13C-210ENST00000561258 CCDC136Q96JN2 1154 aa6.66□□□□□ -1.34
VPS13C-210ENST00000561258 CNOT11Q9UKZ1 510 aaKnown RBP6.66□□□□□ -1.34
VPS13C-210ENST00000561258 PALD1Q9ULE6 856 aa6.66□□□□□ -1.34
VPS13C-210ENST00000561258 MYO15BQ96JP2 1530 aa6.66□□□□□ -1.34
VPS13C-210ENST00000561258 SHTN1A0MZ66 631 aa6.65□□□□□ -1.34
VPS13C-210ENST00000561258 AQP7O14520 342 aa6.65□□□□□ -1.34
VPS13C-210ENST00000561258 NEMP1O14524 444 aa6.65□□□□□ -1.34
VPS13C-210ENST00000561258 TBC1D8O95759 1140 aa6.65□□□□□ -1.34
VPS13C-210ENST00000561258 GLI4P10075 376 aa6.65□□□□□ -1.34
VPS13C-210ENST00000561258 KCNA6P17658 529 aa6.65□□□□□ -1.34
VPS13C-210ENST00000561258 MAGEA10P43363 369 aaPredicted RBP6.65□□□□□ -1.34
VPS13C-210ENST00000561258 PPP2R5AQ15172 486 aa6.65□□□□□ -1.34
VPS13C-210ENST00000561258 LRRC41Q15345 812 aa6.65□□□□□ -1.34
VPS13C-210ENST00000561258 KCNT2Q6UVM3 1135 aa6.65□□□□□ -1.34
VPS13C-210ENST00000561258 UBE2R2Q712K3 238 aaPredicted RBP6.65□□□□□ -1.34
VPS13C-210ENST00000561258 CERS3Q8IU89 383 aa6.65□□□□□ -1.34
VPS13C-210ENST00000561258 NLGN2Q8NFZ4 835 aa6.65□□□□□ -1.34
VPS13C-210ENST00000561258 USP7Q93009 1102 aa6.65□□□□□ -1.34
VPS13C-210ENST00000561258 MTMR8Q96EF0 704 aa6.65□□□□□ -1.34
VPS13C-210ENST00000561258 TTC1Q99614 292 aa6.65□□□□□ -1.34
VPS13C-210ENST00000561258 MCMBPQ9BTE3 642 aa6.65□□□□□ -1.34
VPS13C-210ENST00000561258 TRIM8Q9BZR9 551 aa6.65□□□□□ -1.34
VPS13C-210ENST00000561258 PUS7LQ9H0K6 701 aaKnown RBP6.65□□□□□ -1.34
VPS13C-210ENST00000561258 IFT22Q9H7X7 185 aa6.65□□□□□ -1.34
VPS13C-210ENST00000561258 FBLN5Q9UBX5 448 aa6.65□□□□□ -1.34
VPS13C-210ENST00000561258 PCDHA9Q9Y5H5 950 aa6.65□□□□□ -1.34
VPS13C-210ENST00000561258 ZEB2O60315 1214 aa6.64□□□□□ -1.35
VPS13C-210ENST00000561258 SCGB1D2O95969 90 aa6.64□□□□□ -1.35
VPS13C-210ENST00000561258 RAB27AP51159 221 aa6.64□□□□□ -1.35
VPS13C-210ENST00000561258 ITKQ08881 620 aa6.64□□□□□ -1.35
VPS13C-210ENST00000561258 SCRN1Q12765 414 aa6.64□□□□□ -1.35
VPS13C-210ENST00000561258 TESK1Q15569 626 aa6.64□□□□□ -1.35
VPS13C-210ENST00000561258 DPY19L1Q2PZI1 675 aa6.64□□□□□ -1.35
VPS13C-210ENST00000561258 ACBD5Q5T8D3 534 aaPredicted RBP6.64□□□□□ -1.35
VPS13C-210ENST00000561258 PIK3R6Q5UE93 754 aa6.64□□□□□ -1.35
VPS13C-210ENST00000561258 ABHD17CQ6PCB6 329 aa6.64□□□□□ -1.35
VPS13C-210ENST00000561258 KIF18BQ86Y91 864 aa6.64□□□□□ -1.35
VPS13C-210ENST00000561258 OR2W6PQ8NHA6 318 aa6.64□□□□□ -1.35
VPS13C-210ENST00000561258 NPLOC4Q8TAT6 608 aa6.64□□□□□ -1.35
VPS13C-210ENST00000561258 COPS5Q92905 334 aa6.64□□□□□ -1.35
VPS13C-210ENST00000561258 SPATA6Q9NWH7 488 aaPredicted RBP6.64□□□□□ -1.35
VPS13C-210ENST00000561258 APOBEC2Q9Y235 224 aaKnown RBP6.64□□□□□ -1.35
VPS13C-210ENST00000561258 RIPOR2Q9Y4F9 1068 aa6.64□□□□□ -1.35
VPS13C-210ENST00000561258 PLEKHD1A6NEE1 506 aa6.63□□□□□ -1.35
VPS13C-210ENST00000561258 AKAP10O43572 662 aa6.63□□□□□ -1.35
VPS13C-210ENST00000561258 ITGB3P05106 788 aa6.63□□□□□ -1.35
VPS13C-210ENST00000561258 THBDP07204 575 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms