RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 ATG2AQ2TAZ0 1938 aa16.06■□□□□ 0.16
LDLR-213ENST00000560502 RSPH10B2B2RC85 870 aa16.05■□□□□ 0.16
LDLR-213ENST00000560502 H3BRB1 525 aa16.05■□□□□ 0.16
LDLR-213ENST00000560502 PRC1O43663 620 aa16.05■□□□□ 0.16
LDLR-213ENST00000560502 LGALS2P05162 132 aa16.05■□□□□ 0.16
LDLR-213ENST00000560502 RSPH10BP0C881 870 aa16.05■□□□□ 0.16
LDLR-213ENST00000560502 SMIM10L2AP0DMW4 78 aa16.05■□□□□ 0.16
LDLR-213ENST00000560502 SMIM10L2BP0DMW5 78 aa16.05■□□□□ 0.16
LDLR-213ENST00000560502 ICAM3P32942 547 aa16.05■□□□□ 0.16
LDLR-213ENST00000560502 PLA2G5P39877 138 aa16.05■□□□□ 0.16
LDLR-213ENST00000560502 THPOP40225 353 aa16.05■□□□□ 0.16
LDLR-213ENST00000560502 MRPS9P82933 396 aaKnown RBP16.05■□□□□ 0.16
LDLR-213ENST00000560502 SEMA3FQ13275 785 aa16.05■□□□□ 0.16
LDLR-213ENST00000560502 FAM117BQ6P1L5 589 aa16.05■□□□□ 0.16
LDLR-213ENST00000560502 FCHSD1Q86WN1 690 aa16.05■□□□□ 0.16
LDLR-213ENST00000560502 SPRYD3Q8NCJ5 442 aa16.05■□□□□ 0.16
LDLR-213ENST00000560502 ZNF274Q96GC6 653 aaPredicted RBP16.05■□□□□ 0.16
LDLR-213ENST00000560502 INPP4AQ96PE3 977 aaPredicted RBP16.05■□□□□ 0.16
LDLR-213ENST00000560502 EPHX3Q9H6B9 360 aa16.05■□□□□ 0.16
LDLR-213ENST00000560502 TUT1Q9H6E5 874 aaKnown RBP16.05■□□□□ 0.16
LDLR-213ENST00000560502 MLXIPQ9HAP2 919 aa16.05■□□□□ 0.16
LDLR-213ENST00000560502 TPCN1Q9ULQ1 816 aa16.05■□□□□ 0.16
LDLR-213ENST00000560502 INSL6Q9Y581 213 aa16.05■□□□□ 0.16
LDLR-213ENST00000560502 KAT6AQ92794 2004 aa16.05■□□□□ 0.16
LDLR-213ENST00000560502 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.04■□□□□ 0.16
LDLR-213ENST00000560502 PNMA6FA0A0J9YX94 578 aa16.04■□□□□ 0.16
LDLR-213ENST00000560502 C17orf102A2RUQ5 167 aa16.04■□□□□ 0.16
LDLR-213ENST00000560502 CAND2O75155 1236 aa16.04■□□□□ 0.16
LDLR-213ENST00000560502 AMHP03971 560 aa16.04■□□□□ 0.16
LDLR-213ENST00000560502 SART3Q15020 963 aaKnown RBP16.04■□□□□ 0.16
LDLR-213ENST00000560502 ME3Q16798 604 aa16.04■□□□□ 0.16
LDLR-213ENST00000560502 KHSRPQ92945 711 aaKnown RBP eCLIP16.04■□□□□ 0.16
LDLR-213ENST00000560502 BRF1Q92994 677 aa16.04■□□□□ 0.16
LDLR-213ENST00000560502 ATP6V0A1Q93050 837 aa16.04■□□□□ 0.16
LDLR-213ENST00000560502 LLPHQ9BRT6 129 aaKnown RBP16.04■□□□□ 0.16
LDLR-213ENST00000560502 C17orf80Q9BSJ5 609 aa16.04■□□□□ 0.16
LDLR-213ENST00000560502 UBE2ZQ9H832 354 aaPredicted RBP16.04■□□□□ 0.16
LDLR-213ENST00000560502 SPATA31C2B4DYI2 1134 aa16.03■□□□□ 0.16
LDLR-213ENST00000560502 IFIT3O14879 490 aaKnown RBP16.03■□□□□ 0.16
LDLR-213ENST00000560502 TREHO43280 583 aa16.03■□□□□ 0.16
LDLR-213ENST00000560502 STAM2O75886 525 aa16.03■□□□□ 0.16
LDLR-213ENST00000560502 RCAN1P53805 252 aa16.03■□□□□ 0.16
LDLR-213ENST00000560502 METTL7BQ6UX53 244 aa16.03■□□□□ 0.16
LDLR-213ENST00000560502 MYOCDQ8IZQ8 938 aa16.03■□□□□ 0.16
LDLR-213ENST00000560502 FBXO22Q8NEZ5 403 aa16.03■□□□□ 0.16
LDLR-213ENST00000560502 GTF3C6Q969F1 213 aa16.03■□□□□ 0.16
LDLR-213ENST00000560502 GPR20Q99678 358 aa16.03■□□□□ 0.16
LDLR-213ENST00000560502 OSBPL7Q9BZF2 842 aa16.03■□□□□ 0.16
LDLR-213ENST00000560502 RNPEPQ9H4A4 650 aa16.03■□□□□ 0.16
LDLR-213ENST00000560502 SMC3Q9UQE7 1217 aa16.03■□□□□ 0.16
LDLR-213ENST00000560502 PFKFB2O60825 505 aa16.02■□□□□ 0.16
LDLR-213ENST00000560502 LIFRP42702 1097 aa16.02■□□□□ 0.16
LDLR-213ENST00000560502 ANTXR2P58335 489 aa16.02■□□□□ 0.16
LDLR-213ENST00000560502 ADAM17P78536 824 aa16.02■□□□□ 0.16
LDLR-213ENST00000560502 NEDD9Q14511 834 aa16.02■□□□□ 0.16
LDLR-213ENST00000560502 WTAPQ15007 396 aa16.02■□□□□ 0.16
LDLR-213ENST00000560502 GNPTABQ3T906 1256 aa16.02■□□□□ 0.16
LDLR-213ENST00000560502 LEXMQ3ZCV2 418 aa16.02■□□□□ 0.16
LDLR-213ENST00000560502 TMTC2Q8N394 836 aa16.02■□□□□ 0.16
LDLR-213ENST00000560502 SEPT8Q92599 483 aa16.02■□□□□ 0.16
LDLR-213ENST00000560502 TCEANC2Q96MN5 208 aa16.02■□□□□ 0.16
LDLR-213ENST00000560502 LRFN3Q9BTN0 628 aa16.02■□□□□ 0.16
LDLR-213ENST00000560502 CD320Q9NPF0 282 aa16.02■□□□□ 0.16
LDLR-213ENST00000560502 C11orf16Q9NQ32 467 aa16.02■□□□□ 0.16
LDLR-213ENST00000560502 KIF3AQ9Y496 699 aa16.02■□□□□ 0.16
LDLR-213ENST00000560502 TELO2Q9Y4R8 837 aa16.02■□□□□ 0.16
LDLR-213ENST00000560502 MYO7AQ13402 2215 aa16.02■□□□□ 0.15
LDLR-213ENST00000560502 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.01■□□□□ 0.15
LDLR-213ENST00000560502 FIBPO43427 364 aa16.01■□□□□ 0.15
LDLR-213ENST00000560502 LARGE1O95461 756 aa16.01■□□□□ 0.15
LDLR-213ENST00000560502 PDCP20941 246 aa16.01■□□□□ 0.15
LDLR-213ENST00000560502 SGMS1Q86VZ5 419 aa16.01■□□□□ 0.15
LDLR-213ENST00000560502 TRIM50Q86XT4 487 aa16.01■□□□□ 0.15
LDLR-213ENST00000560502 TOP1MTQ969P6 601 aa16.01■□□□□ 0.15
LDLR-213ENST00000560502 MRPL38Q96DV4 380 aaKnown RBP16.01■□□□□ 0.15
LDLR-213ENST00000560502 SAMD11Q96NU1 681 aa16.01■□□□□ 0.15
LDLR-213ENST00000560502 FOXD4L1Q9NU39 408 aa16.01■□□□□ 0.15
LDLR-213ENST00000560502 NID2Q14112 1375 aa16■□□□□ 0.15
LDLR-213ENST00000560502 ERICH2A1L162 156 aa16■□□□□ 0.15
LDLR-213ENST00000560502 NOP56O00567 594 aaKnown RBP16■□□□□ 0.15
LDLR-213ENST00000560502 SH2B2O14492 632 aaPredicted RBP16■□□□□ 0.15
LDLR-213ENST00000560502 CTSHP09668 335 aa16■□□□□ 0.15
LDLR-213ENST00000560502 HMGN5P82970 282 aaKnown RBP16■□□□□ 0.15
LDLR-213ENST00000560502 EPC2Q52LR7 807 aa16■□□□□ 0.15
LDLR-213ENST00000560502 FAM26DQ5JW98 314 aa16■□□□□ 0.15
LDLR-213ENST00000560502 CLEC17AQ6ZS10 378 aa16■□□□□ 0.15
LDLR-213ENST00000560502 CYFIP1Q7L576 1253 aa16■□□□□ 0.15
LDLR-213ENST00000560502 CCDC83Q8IWF9 413 aa16■□□□□ 0.15
LDLR-213ENST00000560502 GADD45GIP1Q8TAE8 222 aaPredicted RBP16■□□□□ 0.15
LDLR-213ENST00000560502 IGDCC4Q8TDY8 1250 aa16■□□□□ 0.15
LDLR-213ENST00000560502 LMBR1Q8WVP7 490 aa16■□□□□ 0.15
LDLR-213ENST00000560502 GBP4Q96PP9 640 aa16■□□□□ 0.15
LDLR-213ENST00000560502 MAP3K14Q99558 947 aa16■□□□□ 0.15
LDLR-213ENST00000560502 SPZ1Q9BXG8 430 aa16■□□□□ 0.15
LDLR-213ENST00000560502 SETD4Q9NVD3 440 aa16■□□□□ 0.15
LDLR-213ENST00000560502 ARIH1Q9Y4X5 557 aaPredicted RBP16■□□□□ 0.15
LDLR-213ENST00000560502 PIK3CDO00329 1044 aa15.99■□□□□ 0.15
LDLR-213ENST00000560502 GNAT1P11488 350 aa15.99■□□□□ 0.15
LDLR-213ENST00000560502 PTMSP20962 102 aa15.99■□□□□ 0.15
LDLR-213ENST00000560502 COL9A3Q14050 684 aaPredicted RBP15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms