RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 GRAMD1CQ8IYS0 662 aa13.66□□□□□ -0.22
HERC1-205ENST00000559886 KCTD17Q8N5Z5 321 aa13.66□□□□□ -0.22
HERC1-205ENST00000559886 SYNGAP1Q96PV0 1343 aa13.66□□□□□ -0.22
HERC1-205ENST00000559886 MTRQ99707 1265 aa13.66□□□□□ -0.22
HERC1-205ENST00000559886 TINF2Q9BSI4 451 aa13.66□□□□□ -0.22
HERC1-205ENST00000559886 BCAS3Q9H6U6 928 aa13.66□□□□□ -0.22
HERC1-205ENST00000559886 KBTBD4Q9NVX7 518 aa13.66□□□□□ -0.22
HERC1-205ENST00000559886 RGL1Q9NZL6 768 aa13.66□□□□□ -0.22
HERC1-205ENST00000559886 KIAA1024Q9UPX6 916 aa13.66□□□□□ -0.22
HERC1-205ENST00000559886 SLITRK3O94933 977 aa13.66□□□□□ -0.22
HERC1-205ENST00000559886 SNAI1O95863 264 aaPredicted RBP13.66□□□□□ -0.22
HERC1-205ENST00000559886 MUTP22033 750 aa13.66□□□□□ -0.22
HERC1-205ENST00000559886 SFNP31947 248 aa13.66□□□□□ -0.22
HERC1-205ENST00000559886 AFMP43652 599 aa13.66□□□□□ -0.22
HERC1-205ENST00000559886 FCGRTP55899 365 aa13.66□□□□□ -0.22
HERC1-205ENST00000559886 KCNK18Q7Z418 384 aa13.66□□□□□ -0.22
HERC1-205ENST00000559886 GIMAP8Q8ND71 665 aaPredicted RBP13.66□□□□□ -0.22
HERC1-205ENST00000559886 RDM1Q8NG50 284 aa13.66□□□□□ -0.22
HERC1-205ENST00000559886 NEK9Q8TD19 979 aa13.66□□□□□ -0.22
HERC1-205ENST00000559886 ERCC4Q92889 916 aaPredicted RBP13.66□□□□□ -0.22
HERC1-205ENST00000559886 FUCA2Q9BTY2 467 aa13.66□□□□□ -0.22
HERC1-205ENST00000559886 JPH1Q9HDC5 661 aaPredicted RBP13.66□□□□□ -0.22
HERC1-205ENST00000559886 VTA1Q9NP79 307 aa13.66□□□□□ -0.22
HERC1-205ENST00000559886 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.66□□□□□ -0.22
HERC1-205ENST00000559886 TCEAL9Q9UHQ7 104 aa13.66□□□□□ -0.22
HERC1-205ENST00000559886 MYH9P35579 1960 aaKnown RBP13.66□□□□□ -0.22
HERC1-205ENST00000559886 WDR64B1ANS9 1081 aa13.65□□□□□ -0.22
HERC1-205ENST00000559886 PRR29P0C7W0 189 aa13.65□□□□□ -0.22
HERC1-205ENST00000559886 UBA1P22314 1058 aaKnown RBP13.65□□□□□ -0.22
HERC1-205ENST00000559886 RGS2P41220 211 aa13.65□□□□□ -0.22
HERC1-205ENST00000559886 PSMC4P43686 418 aa13.65□□□□□ -0.22
HERC1-205ENST00000559886 JAK3P52333 1124 aa13.65□□□□□ -0.22
HERC1-205ENST00000559886 CYP4A11Q02928 519 aa13.65□□□□□ -0.22
HERC1-205ENST00000559886 CCDC62Q6P9F0 684 aa13.65□□□□□ -0.22
HERC1-205ENST00000559886 RAD54LQ92698 747 aa13.65□□□□□ -0.22
HERC1-205ENST00000559886 DYDC2Q96IM9 177 aa13.65□□□□□ -0.22
HERC1-205ENST00000559886 TRIM47Q96LD4 638 aa13.65□□□□□ -0.22
HERC1-205ENST00000559886 KATNBL1Q9H079 304 aa13.65□□□□□ -0.22
HERC1-205ENST00000559886 SLC9A2Q9UBY0 812 aa13.65□□□□□ -0.22
HERC1-205ENST00000559886 DDX41Q9UJV9 622 aaKnown RBP13.65□□□□□ -0.22
HERC1-205ENST00000559886 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.65□□□□□ -0.22
HERC1-205ENST00000559886 POTEFA5A3E0 1075 aa13.65□□□□□ -0.22
HERC1-205ENST00000559886 SP3Q02447 781 aa13.65□□□□□ -0.22
HERC1-205ENST00000559886 NEDD9Q14511 834 aa13.65□□□□□ -0.22
HERC1-205ENST00000559886 TAPT1Q6NXT6 567 aa13.65□□□□□ -0.22
HERC1-205ENST00000559886 POTEGQ6S5H5 508 aa13.65□□□□□ -0.22
HERC1-205ENST00000559886 SMAP1Q8IYB5 467 aaPredicted RBP13.65□□□□□ -0.22
HERC1-205ENST00000559886 SCFD2Q8WU76 684 aa13.65□□□□□ -0.22
HERC1-205ENST00000559886 LARP4BQ92615 738 aaKnown RBP13.65□□□□□ -0.22
HERC1-205ENST00000559886 STAMQ92783 540 aa13.65□□□□□ -0.22
HERC1-205ENST00000559886 ARHGAP39Q9C0H5 1083 aa13.65□□□□□ -0.22
HERC1-205ENST00000559886 TUBE1Q9UJT0 475 aa13.65□□□□□ -0.22
HERC1-205ENST00000559886 CASP8AP2Q9UKL3 1982 aa13.64□□□□□ -0.23
HERC1-205ENST00000559886 RBM47A0AV96 593 aaKnown RBP13.64□□□□□ -0.23
HERC1-205ENST00000559886 ARIH2O95376 493 aa13.64□□□□□ -0.23
HERC1-205ENST00000559886 P4HBP07237 508 aaKnown RBP13.64□□□□□ -0.23
HERC1-205ENST00000559886 CTTNQ14247 550 aaKnown RBP13.64□□□□□ -0.23
HERC1-205ENST00000559886 NT5DC1Q5TFE4 455 aa13.64□□□□□ -0.23
HERC1-205ENST00000559886 CYFIP1Q7L576 1253 aa13.64□□□□□ -0.23
HERC1-205ENST00000559886 SPATA20Q8TB22 786 aa13.64□□□□□ -0.23
HERC1-205ENST00000559886 APBA2Q99767 749 aa13.64□□□□□ -0.23
HERC1-205ENST00000559886 SAMM50Q9Y512 469 aa13.64□□□□□ -0.23
HERC1-205ENST00000559886 PCDHA5Q9Y5H7 936 aa13.64□□□□□ -0.23
HERC1-205ENST00000559886 GTPBP6O43824 516 aaPredicted RBP13.64□□□□□ -0.23
HERC1-205ENST00000559886 MYL1P05976 194 aa13.64□□□□□ -0.23
HERC1-205ENST00000559886 CCDC192P0DO97 292 aa13.64□□□□□ -0.23
HERC1-205ENST00000559886 SARSP49591 514 aaKnown RBP13.64□□□□□ -0.23
HERC1-205ENST00000559886 DPYDQ12882 1025 aa13.64□□□□□ -0.23
HERC1-205ENST00000559886 TTLL4Q14679 1199 aa13.64□□□□□ -0.23
HERC1-205ENST00000559886 LY6KQ17RY6 165 aa13.64□□□□□ -0.23
HERC1-205ENST00000559886 OLFML2BQ68BL8 750 aa13.64□□□□□ -0.23
HERC1-205ENST00000559886 SASS6Q6UVJ0 657 aa13.64□□□□□ -0.23
HERC1-205ENST00000559886 SV2BQ7L1I2 683 aa13.64□□□□□ -0.23
HERC1-205ENST00000559886 TPH2Q8IWU9 490 aa13.64□□□□□ -0.23
HERC1-205ENST00000559886 ABHD16BQ9H3Z7 469 aa13.64□□□□□ -0.23
HERC1-205ENST00000559886 PDGFCQ9NRA1 345 aa13.64□□□□□ -0.23
HERC1-205ENST00000559886 DNM3Q9UQ16 869 aa13.64□□□□□ -0.23
HERC1-205ENST00000559886 PCDHA10Q9Y5I2 948 aa13.64□□□□□ -0.23
HERC1-205ENST00000559886 E9PMD0 336 aa13.63□□□□□ -0.23
HERC1-205ENST00000559886 FARP2O94887 1054 aaPredicted RBP13.63□□□□□ -0.23
HERC1-205ENST00000559886 IGHA2P01877 340 aa13.63□□□□□ -0.23
HERC1-205ENST00000559886 CYP2B6P20813 491 aa13.63□□□□□ -0.23
HERC1-205ENST00000559886 ACTR2P61160 394 aa13.63□□□□□ -0.23
HERC1-205ENST00000559886 MCM6Q14566 821 aa13.63□□□□□ -0.23
HERC1-205ENST00000559886 LXNQ9BS40 222 aa13.63□□□□□ -0.23
HERC1-205ENST00000559886 FLRT1Q9NZU1 646 aa13.63□□□□□ -0.23
HERC1-205ENST00000559886 WRAP73Q9P2S5 460 aaPredicted RBP13.63□□□□□ -0.23
HERC1-205ENST00000559886 SMC2O95347 1197 aa13.63□□□□□ -0.23
HERC1-205ENST00000559886 ATG7O95352 703 aa13.63□□□□□ -0.23
HERC1-205ENST00000559886 GGPS1O95749 300 aa13.63□□□□□ -0.23
HERC1-205ENST00000559886 TXNP10599 105 aaKnown RBP13.63□□□□□ -0.23
HERC1-205ENST00000559886 XRCC5P13010 732 aaKnown RBP13.63□□□□□ -0.23
HERC1-205ENST00000559886 CASP1P29466 404 aa13.63□□□□□ -0.23
HERC1-205ENST00000559886 PSMC6P62333 389 aa13.63□□□□□ -0.23
HERC1-205ENST00000559886 AMPD3Q01432 767 aa13.63□□□□□ -0.23
HERC1-205ENST00000559886 TYRO3Q06418 890 aa13.63□□□□□ -0.23
HERC1-205ENST00000559886 IRF5Q13568 498 aa13.63□□□□□ -0.23
HERC1-205ENST00000559886 CUL4BQ13620 913 aa13.63□□□□□ -0.23
HERC1-205ENST00000559886 KIF22Q14807 665 aa13.63□□□□□ -0.23
HERC1-205ENST00000559886 CELF3Q5SZQ8 465 aaKnown RBP13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms