RNA–Protein interactions for RNA: ENST00000559822.1

SPG11-219, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 561 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-219ENST00000559822 PRUNE2Q8WUY3 3088 aa14.04□□□□□ -0.16
SPG11-219ENST00000559822 TTC28Q96AY4 2481 aa14.04□□□□□ -0.16
SPG11-219ENST00000559822 CCDC196A0A1B0GTZ2 297 aa14.04□□□□□ -0.16
SPG11-219ENST00000559822 RPLP2P05387 115 aaKnown RBP14.04□□□□□ -0.16
SPG11-219ENST00000559822 CTSHP09668 335 aa14.04□□□□□ -0.16
SPG11-219ENST00000559822 ITGB5P18084 799 aa14.04□□□□□ -0.16
SPG11-219ENST00000559822 EXOSC10Q01780 885 aaKnown RBP14.04□□□□□ -0.16
SPG11-219ENST00000559822 COL9A3Q14050 684 aaPredicted RBP14.04□□□□□ -0.16
SPG11-219ENST00000559822 WWC2Q6AWC2 1192 aa14.04□□□□□ -0.16
SPG11-219ENST00000559822 LMBR1Q8WVP7 490 aa14.04□□□□□ -0.16
SPG11-219ENST00000559822 APBB2Q92870 758 aa14.04□□□□□ -0.16
SPG11-219ENST00000559822 GLG1Q92896 1179 aa14.04□□□□□ -0.16
SPG11-219ENST00000559822 TNPO1Q92973 898 aaKnown RBP14.04□□□□□ -0.16
SPG11-219ENST00000559822 TGS1Q96RS0 853 aaKnown RBP14.04□□□□□ -0.16
SPG11-219ENST00000559822 SMARCAD1Q9H4L7 1026 aa14.04□□□□□ -0.16
SPG11-219ENST00000559822 RIC8AQ9NPQ8 531 aa14.04□□□□□ -0.16
SPG11-219ENST00000559822 JADE2Q9NQC1 790 aa14.04□□□□□ -0.16
SPG11-219ENST00000559822 LMCD1Q9NZU5 365 aa14.04□□□□□ -0.16
SPG11-219ENST00000559822 KLF18A0A0U1RQI7 1052 aa14.03□□□□□ -0.16
SPG11-219ENST00000559822 LCHNA4D1U4 455 aa14.03□□□□□ -0.16
SPG11-219ENST00000559822 GOLGA8AA7E2F4 631 aa14.03□□□□□ -0.16
SPG11-219ENST00000559822 GOLGA8BA8MQT2 603 aa14.03□□□□□ -0.16
SPG11-219ENST00000559822 RFXAPO00287 272 aa14.03□□□□□ -0.16
SPG11-219ENST00000559822 ATP9AO75110 1047 aa14.03□□□□□ -0.16
SPG11-219ENST00000559822 ADCY7P51828 1080 aa14.03□□□□□ -0.16
SPG11-219ENST00000559822 ADAM17P78536 824 aa14.03□□□□□ -0.16
SPG11-219ENST00000559822 PPFIA1Q13136 1202 aa14.03□□□□□ -0.16
SPG11-219ENST00000559822 GRB10Q13322 594 aa14.03□□□□□ -0.16
SPG11-219ENST00000559822 MYOCDQ8IZQ8 938 aa14.03□□□□□ -0.16
SPG11-219ENST00000559822 JPH1Q9HDC5 661 aaPredicted RBP14.03□□□□□ -0.16
SPG11-219ENST00000559822 COG5Q9UP83 839 aa14.03□□□□□ -0.16
SPG11-219ENST00000559822 KAT6AQ92794 2004 aa14.03□□□□□ -0.16
SPG11-219ENST00000559822 MICAL3Q7RTP6 2002 aa14.02□□□□□ -0.16
SPG11-219ENST00000559822 EPOPA6NHQ4 379 aa14.02□□□□□ -0.17
SPG11-219ENST00000559822 TNFRSF10AO00220 468 aa14.02□□□□□ -0.17
SPG11-219ENST00000559822 ARHGEF15O94989 841 aa14.02□□□□□ -0.17
SPG11-219ENST00000559822 ERVK-21P61565 698 aa14.02□□□□□ -0.17
SPG11-219ENST00000559822 AP3B2Q13367 1082 aa14.02□□□□□ -0.17
SPG11-219ENST00000559822 TCTN1Q2MV58 587 aa14.02□□□□□ -0.17
SPG11-219ENST00000559822 FAM26DQ5JW98 314 aa14.02□□□□□ -0.17
SPG11-219ENST00000559822 FAM117BQ6P1L5 589 aa14.02□□□□□ -0.17
SPG11-219ENST00000559822 TMCO2Q7Z6W1 182 aaPredicted RBP14.02□□□□□ -0.17
SPG11-219ENST00000559822 RPAINQ86UA6 219 aa14.02□□□□□ -0.17
SPG11-219ENST00000559822 RASEFQ8IZ41 740 aa14.02□□□□□ -0.17
SPG11-219ENST00000559822 ADAMTS19Q8TE59 1207 aa14.02□□□□□ -0.17
SPG11-219ENST00000559822 TCEANC2Q96MN5 208 aa14.02□□□□□ -0.17
SPG11-219ENST00000559822 MXRA8Q9BRK3 442 aa14.02□□□□□ -0.17
SPG11-219ENST00000559822 SDF4Q9BRK5 362 aa14.02□□□□□ -0.17
SPG11-219ENST00000559822 AZI2Q9H6S1 392 aa14.02□□□□□ -0.17
SPG11-219ENST00000559822 BARHL2Q9NY43 387 aa14.02□□□□□ -0.17
SPG11-219ENST00000559822 PKD2L1Q9P0L9 805 aa14.02□□□□□ -0.17
SPG11-219ENST00000559822 SLC9A2Q9UBY0 812 aa14.02□□□□□ -0.17
SPG11-219ENST00000559822 BRPF3Q9ULD4 1205 aa14.02□□□□□ -0.17
SPG11-219ENST00000559822 NAP1L2Q9ULW6 460 aaPredicted RBP14.02□□□□□ -0.17
SPG11-219ENST00000559822 V9GY48 417 aaPredicted RBP14.02□□□□□ -0.17
SPG11-219ENST00000559822 CHD7Q9P2D1 2997 aa14.02□□□□□ -0.17
SPG11-219ENST00000559822 PRRC2BQ5JSZ5 2229 aaKnown RBP14.02□□□□□ -0.17
SPG11-219ENST00000559822 VCANP13611 3396 aa14.02□□□□□ -0.17
SPG11-219ENST00000559822 NFASCO94856 1347 aa14.01□□□□□ -0.17
SPG11-219ENST00000559822 GSTTP1A0A1W2PQM5 241 aa14.01□□□□□ -0.17
SPG11-219ENST00000559822 LINC01553A4QN01 128 aa14.01□□□□□ -0.17
SPG11-219ENST00000559822 SMCO2A6NFE2 343 aa14.01□□□□□ -0.17
SPG11-219ENST00000559822 RRN3P2A6NIE6 340 aa14.01□□□□□ -0.17
SPG11-219ENST00000559822 MKRN4PQ13434 485 aaPredicted RBP14.01□□□□□ -0.17
SPG11-219ENST00000559822 GRIK4Q16099 956 aa14.01□□□□□ -0.17
SPG11-219ENST00000559822 ADCK5Q3MIX3 580 aa14.01□□□□□ -0.17
SPG11-219ENST00000559822 CEP55Q53EZ4 464 aa14.01□□□□□ -0.17
SPG11-219ENST00000559822 MCTP2Q6DN12 878 aa14.01□□□□□ -0.17
SPG11-219ENST00000559822 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.01□□□□□ -0.17
SPG11-219ENST00000559822 CCDC12Q8WUD4 166 aaPredicted RBP14.01□□□□□ -0.17
SPG11-219ENST00000559822 SAMD11Q96NU1 681 aa14.01□□□□□ -0.17
SPG11-219ENST00000559822 ANO3Q9BYT9 981 aa14.01□□□□□ -0.17
SPG11-219ENST00000559822 IFIH1Q9BYX4 1025 aaKnown RBP14.01□□□□□ -0.17
SPG11-219ENST00000559822 KCNH7Q9NS40 1196 aa14.01□□□□□ -0.17
SPG11-219ENST00000559822 TUBE1Q9UJT0 475 aa14.01□□□□□ -0.17
SPG11-219ENST00000559822 COL4A4P53420 1690 aaPredicted RBP14.01□□□□□ -0.17
SPG11-219ENST00000559822 STXBP3O00186 592 aa14□□□□□ -0.17
SPG11-219ENST00000559822 MARK3P27448 753 aa14□□□□□ -0.17
SPG11-219ENST00000559822 METAP2P50579 478 aaKnown RBP eCLIP14□□□□□ -0.17
SPG11-219ENST00000559822 HTRA4P83105 476 aaPredicted RBP14□□□□□ -0.17
SPG11-219ENST00000559822 FUT2Q10981 343 aa14□□□□□ -0.17
SPG11-219ENST00000559822 BLOC1S2Q6QNY1 142 aa14□□□□□ -0.17
SPG11-219ENST00000559822 SKAP1Q86WV1 359 aa14□□□□□ -0.17
SPG11-219ENST00000559822 SP7Q8TDD2 431 aaPredicted RBP14□□□□□ -0.17
SPG11-219ENST00000559822 GDPD5Q8WTR4 605 aa14□□□□□ -0.17
SPG11-219ENST00000559822 TOP1MTQ969P6 601 aa14□□□□□ -0.17
SPG11-219ENST00000559822 CCDC136Q96JN2 1154 aa14□□□□□ -0.17
SPG11-219ENST00000559822 UHRF1Q96T88 793 aaPredicted RBP14□□□□□ -0.17
SPG11-219ENST00000559822 YME1L1Q96TA2 773 aa14□□□□□ -0.17
SPG11-219ENST00000559822 MTUS1Q9ULD2 1270 aa14□□□□□ -0.17
SPG11-219ENST00000559822 TELO2Q9Y4R8 837 aa14□□□□□ -0.17
SPG11-219ENST00000559822 SIP14410 1827 aa13.99□□□□□ -0.17
SPG11-219ENST00000559822 MBLAC1A4D2B0 266 aaPredicted RBP13.99□□□□□ -0.17
SPG11-219ENST00000559822 LPXNO60711 386 aa13.99□□□□□ -0.17
SPG11-219ENST00000559822 REC8O95072 547 aa13.99□□□□□ -0.17
SPG11-219ENST00000559822 ZNF76P36508 570 aa13.99□□□□□ -0.17
SPG11-219ENST00000559822 SREBF1P36956 1147 aa13.99□□□□□ -0.17
SPG11-219ENST00000559822 SLC26A2P50443 739 aa13.99□□□□□ -0.17
SPG11-219ENST00000559822 TYW1BQ6NUM6 668 aa13.99□□□□□ -0.17
SPG11-219ENST00000559822 NIPA1Q7RTP0 329 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms