RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 SAMM50Q9Y512 469 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 PCDHA10Q9Y5I2 948 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 CLIC4Q9Y696 253 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 A6NJR5 290 aa10.39□□□□□ -0.75
LDLR-210ENST00000559340 KBTBD13C9JR72 458 aa10.39□□□□□ -0.75
LDLR-210ENST00000559340 DDX39AO00148 427 aaKnown RBP10.39□□□□□ -0.75
LDLR-210ENST00000559340 DHX15O43143 795 aaKnown RBP10.39□□□□□ -0.75
LDLR-210ENST00000559340 SLC26A4O43511 780 aa10.39□□□□□ -0.75
LDLR-210ENST00000559340 CABYRO75952 493 aa10.39□□□□□ -0.75
LDLR-210ENST00000559340 CST5P28325 142 aaPredicted RBP10.39□□□□□ -0.75
LDLR-210ENST00000559340 FXR2P51116 673 aaKnown RBP eCLIP10.39□□□□□ -0.75
LDLR-210ENST00000559340 DNM1Q05193 864 aaKnown RBP10.39□□□□□ -0.75
LDLR-210ENST00000559340 ITGB3BPQ13352 177 aaPredicted RBP10.39□□□□□ -0.75
LDLR-210ENST00000559340 NBR1Q14596 966 aa10.39□□□□□ -0.75
LDLR-210ENST00000559340 EPHA7Q15375 998 aa10.39□□□□□ -0.75
LDLR-210ENST00000559340 MTFR1Q15390 333 aa10.39□□□□□ -0.75
LDLR-210ENST00000559340 FSCN1Q16658 493 aaKnown RBP10.39□□□□□ -0.75
LDLR-210ENST00000559340 FOXD4L6Q3SYB3 417 aaPredicted RBP10.39□□□□□ -0.75
LDLR-210ENST00000559340 FAM173BQ6P4H8 233 aa10.39□□□□□ -0.75
LDLR-210ENST00000559340 FOXD4L3Q6VB84 417 aaPredicted RBP10.39□□□□□ -0.75
LDLR-210ENST00000559340 KRI1Q8N9T8 703 aaKnown RBP10.39□□□□□ -0.75
LDLR-210ENST00000559340 ANKLE1Q8NAG6 615 aa10.39□□□□□ -0.75
LDLR-210ENST00000559340 LINC00301Q8NCQ3 95 aa10.39□□□□□ -0.75
LDLR-210ENST00000559340 NEK9Q8TD19 979 aa10.39□□□□□ -0.75
LDLR-210ENST00000559340 AFG1LQ8WV93 481 aa10.39□□□□□ -0.75
LDLR-210ENST00000559340 HAS1Q92839 578 aa10.39□□□□□ -0.75
LDLR-210ENST00000559340 COPS5Q92905 334 aa10.39□□□□□ -0.75
LDLR-210ENST00000559340 SPATA32Q96LK8 384 aa10.39□□□□□ -0.75
LDLR-210ENST00000559340 AK8Q96MA6 479 aa10.39□□□□□ -0.75
LDLR-210ENST00000559340 SEZ6LQ9BYH1 1024 aa10.39□□□□□ -0.75
LDLR-210ENST00000559340 TMEM60Q9H2L4 133 aa10.39□□□□□ -0.75
LDLR-210ENST00000559340 SMARCAD1Q9H4L7 1026 aa10.39□□□□□ -0.75
LDLR-210ENST00000559340 DISC1Q9NRI5 854 aa10.39□□□□□ -0.75
LDLR-210ENST00000559340 RCOR1Q9UKL0 485 aa10.39□□□□□ -0.75
LDLR-210ENST00000559340 EVPLQ92817 2033 aa10.39□□□□□ -0.75
LDLR-210ENST00000559340 TRIP12Q14669 1992 aaPredicted RBP10.39□□□□□ -0.75
LDLR-210ENST00000559340 TNRC18O15417 2968 aaPredicted RBP10.38□□□□□ -0.75
LDLR-210ENST00000559340 SYNRGQ9UMZ2 1314 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 POTEFA5A3E0 1075 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 MOXD2PA6NHM9 499 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 WNT7AO00755 349 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 BACH1O14867 736 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 ATG7O95352 703 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 MYCP01106 439 aaPredicted RBP10.38□□□□□ -0.75
LDLR-210ENST00000559340 MYCNP04198 464 aaPredicted RBP10.38□□□□□ -0.75
LDLR-210ENST00000559340 MUTP22033 750 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 LONP1P36776 959 aaKnown RBP10.38□□□□□ -0.75
LDLR-210ENST00000559340 TXLNAP40222 546 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 TECP42680 631 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 GJA8P48165 433 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 SLC26A2P50443 739 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 ACTR2P61160 394 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 PTPAQ15257 358 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 KRT79Q5XKE5 535 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 HAUS3Q68CZ6 603 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 LHX8Q68G74 356 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 NCAPH2Q6IBW4 605 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 KCTD17Q8N5Z5 321 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 KLHDC9Q8NEP7 349 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 U2AF1L4Q8WU68 220 aaKnown RBP10.38□□□□□ -0.75
LDLR-210ENST00000559340 GBP4Q96PP9 640 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 GPR20Q99678 358 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 KATNAL1Q9BW62 490 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 CRISPLD2Q9H0B8 497 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 UNC45AQ9H3U1 944 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 LRWD1Q9UFC0 647 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 ZNF215Q9UL58 517 aaPredicted RBP10.38□□□□□ -0.75
LDLR-210ENST00000559340 OGDHLQ9ULD0 1010 aa10.38□□□□□ -0.75
LDLR-210ENST00000559340 SRPRBQ9Y5M8 271 aaKnown RBP10.38□□□□□ -0.75
LDLR-210ENST00000559340 SCN10AQ9Y5Y9 1956 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 GSTTP1A0A1W2PQM5 241 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 VWA3AA6NCI4 1184 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 GOLGA6L4A6NEF3 574 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 GOLGA6L22H0YM25 854 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 DNM1LO00429 736 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 CHMP2AO43633 222 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 CUTAO60888 179 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 ADAMTS4O75173 837 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 PGK1P00558 417 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 P4HBP07237 508 aaKnown RBP10.37□□□□□ -0.75
LDLR-210ENST00000559340 MMP3P08254 477 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 MYL3P08590 195 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 SUPT20HL2P0C7V6 817 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 HOXD8P13378 290 aaPredicted RBP10.37□□□□□ -0.75
LDLR-210ENST00000559340 MARCKSP29966 332 aaPredicted RBP10.37□□□□□ -0.75
LDLR-210ENST00000559340 TCF7P36402 384 aaPredicted RBP10.37□□□□□ -0.75
LDLR-210ENST00000559340 UBA7P41226 1012 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 ME1P48163 572 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 STAT5BP51692 787 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 SP4Q02446 784 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 LRRC41Q15345 812 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 HSDL1Q3SXM5 330 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 HABP4Q5JVS0 413 aaKnown RBP10.37□□□□□ -0.75
LDLR-210ENST00000559340 GJC2Q5T442 439 aaPredicted RBP10.37□□□□□ -0.75
LDLR-210ENST00000559340 UTP14CQ5TAP6 766 aaKnown RBP10.37□□□□□ -0.75
LDLR-210ENST00000559340 ABHD15Q6UXT9 468 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 PLPPR4Q7Z2D5 763 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 ZNF579Q8NAF0 562 aaKnown RBP10.37□□□□□ -0.75
LDLR-210ENST00000559340 GLG1Q92896 1179 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 ATP6V0A1Q93050 837 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms