RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 U2AF2P26368 475 aaKnown RBP eCLIP16.22■□□□□ 0.194e-9■■■■□ 20.4
USP3-205ENST00000557884 NBR1Q14596 966 aa16.22■□□□□ 0.19
USP3-205ENST00000557884 KIAA0753Q2KHM9 967 aa16.22■□□□□ 0.19
USP3-205ENST00000557884 C16orf70Q9BSU1 422 aa16.22■□□□□ 0.19
USP3-205ENST00000557884 TCEAL9Q9UHQ7 104 aa16.22■□□□□ 0.19
USP3-205ENST00000557884 SYT1P21579 422 aa16.21■□□□□ 0.19
USP3-205ENST00000557884 MARK3P27448 753 aa16.21■□□□□ 0.19
USP3-205ENST00000557884 MCM7P33993 719 aa16.21■□□□□ 0.19
USP3-205ENST00000557884 CDK7P50613 346 aa16.21■□□□□ 0.19
USP3-205ENST00000557884 ZNF174Q15697 407 aa16.21■□□□□ 0.19
USP3-205ENST00000557884 TTC38Q5R3I4 469 aa16.21■□□□□ 0.19
USP3-205ENST00000557884 C1orf53Q5VUE5 145 aa16.21■□□□□ 0.19
USP3-205ENST00000557884 FERMT3Q86UX7 667 aa16.21■□□□□ 0.19
USP3-205ENST00000557884 SLC43A3Q8NBI5 491 aa16.21■□□□□ 0.19
USP3-205ENST00000557884 GLG1Q92896 1179 aa16.21■□□□□ 0.19
USP3-205ENST00000557884 KATNAL1Q9BW62 490 aa16.21■□□□□ 0.19
USP3-205ENST00000557884 TEKT3Q9BXF9 490 aa16.21■□□□□ 0.19
USP3-205ENST00000557884 TRPV6Q9H1D0 765 aa16.21■□□□□ 0.19
USP3-205ENST00000557884 UNC45AQ9H3U1 944 aa16.21■□□□□ 0.19
USP3-205ENST00000557884 KCNMB3Q9NPA1 279 aa16.21■□□□□ 0.19
USP3-205ENST00000557884 PRDM5Q9NQX1 630 aaPredicted RBP16.21■□□□□ 0.19
USP3-205ENST00000557884 ZMYND8Q9ULU4 1186 aaPredicted RBP16.21■□□□□ 0.19
USP3-205ENST00000557884 NOL7Q9UMY1 257 aaKnown RBP16.21■□□□□ 0.19
USP3-205ENST00000557884 MYH7BA7E2Y1 1941 aa16.21■□□□□ 0.19
USP3-205ENST00000557884 DCDC2CA8MYV0 355 aa16.2■□□□□ 0.18
USP3-205ENST00000557884 H3BRB1 525 aa16.2■□□□□ 0.18
USP3-205ENST00000557884 BACH1O14867 736 aa16.2■□□□□ 0.18
USP3-205ENST00000557884 NEMFO60524 1076 aa16.2■□□□□ 0.18
USP3-205ENST00000557884 PSMD10O75832 226 aa16.2■□□□□ 0.18
USP3-205ENST00000557884 SUPT20HL2P0C7V6 817 aa16.2■□□□□ 0.18
USP3-205ENST00000557884 SYN1P17600 705 aa16.2■□□□□ 0.18
USP3-205ENST00000557884 KRT76Q01546 638 aa16.2■□□□□ 0.18
USP3-205ENST00000557884 CALCRLQ16602 461 aa16.2■□□□□ 0.18
USP3-205ENST00000557884 ZNF746Q6NUN9 644 aaPredicted RBP16.2■□□□□ 0.18
USP3-205ENST00000557884 ABHD15Q6UXT9 468 aa16.2■□□□□ 0.18
USP3-205ENST00000557884 ANKRD33Q7Z3H0 272 aa16.2■□□□□ 0.18
USP3-205ENST00000557884 HAS1Q92839 578 aa16.2■□□□□ 0.18
USP3-205ENST00000557884 PCYT2Q99447 389 aa16.2■□□□□ 0.18
USP3-205ENST00000557884 RIT2Q99578 217 aa16.2■□□□□ 0.18
USP3-205ENST00000557884 TUT1Q9H6E5 874 aaKnown RBP16.2■□□□□ 0.18
USP3-205ENST00000557884 TRMT13Q9NUP7 481 aaKnown RBP16.2■□□□□ 0.18
USP3-205ENST00000557884 ZNF215Q9UL58 517 aaPredicted RBP16.2■□□□□ 0.18
USP3-205ENST00000557884 SAMM50Q9Y512 469 aa16.2■□□□□ 0.18
USP3-205ENST00000557884 NR2E3Q9Y5X4 410 aa16.2■□□□□ 0.18
USP3-205ENST00000557884 MROH7Q68CQ1 1323 aa16.19■□□□□ 0.18
USP3-205ENST00000557884 HAS3O00219 553 aa16.19■□□□□ 0.18
USP3-205ENST00000557884 B4GALT4O60513 344 aa16.19■□□□□ 0.18
USP3-205ENST00000557884 TOB1P50616 345 aaPredicted RBP16.19■□□□□ 0.18
USP3-205ENST00000557884 MIS18BP1Q6P0N0 1132 aa16.19■□□□□ 0.18
USP3-205ENST00000557884 NFRKBQ6P4R8 1299 aa16.19■□□□□ 0.18
USP3-205ENST00000557884 SH3RF1Q7Z6J0 888 aa16.19■□□□□ 0.18
USP3-205ENST00000557884 CCDC60Q8IWA6 550 aaPredicted RBP16.19■□□□□ 0.18
USP3-205ENST00000557884 FAM126BQ8IXS8 530 aa16.19■□□□□ 0.18
USP3-205ENST00000557884 C7orf31Q8N865 590 aa16.19■□□□□ 0.18
USP3-205ENST00000557884 FAM20AQ96MK3 541 aa16.19■□□□□ 0.18
USP3-205ENST00000557884 TMEM60Q9H2L4 133 aa16.19■□□□□ 0.18
USP3-205ENST00000557884 AZI2Q9H6S1 392 aa16.19■□□□□ 0.18
USP3-205ENST00000557884 PDLIM7Q9NR12 457 aa16.19■□□□□ 0.18
USP3-205ENST00000557884 HDAC6Q9UBN7 1215 aa16.19■□□□□ 0.18
USP3-205ENST00000557884 WDR64B1ANS9 1081 aa16.18■□□□□ 0.18
USP3-205ENST00000557884 H0YGN5 161 aa16.18■□□□□ 0.18
USP3-205ENST00000557884 TLR3O15455 904 aaKnown RBP16.18■□□□□ 0.18
USP3-205ENST00000557884 LGR5O75473 907 aa16.18■□□□□ 0.18
USP3-205ENST00000557884 ATG7O95352 703 aa16.18■□□□□ 0.18
USP3-205ENST00000557884 BAG4O95429 457 aaKnown RBP16.18■□□□□ 0.18
USP3-205ENST00000557884 CLTBP09497 229 aa16.18■□□□□ 0.18
USP3-205ENST00000557884 TRAPPC10P48553 1259 aa16.18■□□□□ 0.18
USP3-205ENST00000557884 FAAP100Q0VG06 881 aa16.18■□□□□ 0.18
USP3-205ENST00000557884 GDF6Q6KF10 455 aaPredicted RBP16.18■□□□□ 0.18
USP3-205ENST00000557884 SWSAP1Q6NVH7 229 aa16.18■□□□□ 0.18
USP3-205ENST00000557884 MIER3Q7Z3K6 550 aa16.18■□□□□ 0.18
USP3-205ENST00000557884 SMAP1Q8IYB5 467 aaPredicted RBP16.18■□□□□ 0.18
USP3-205ENST00000557884 TOX2Q96NM4 488 aa16.18■□□□□ 0.18
USP3-205ENST00000557884 RNPEPQ9H4A4 650 aa16.18■□□□□ 0.18
USP3-205ENST00000557884 SMARCAD1Q9H4L7 1026 aa16.18■□□□□ 0.18
USP3-205ENST00000557884 DISC1Q9NRI5 854 aa16.18■□□□□ 0.18
USP3-205ENST00000557884 TMEM39AQ9NV64 488 aa16.18■□□□□ 0.18
USP3-205ENST00000557884 VAV3Q9UKW4 847 aa16.18■□□□□ 0.18
USP3-205ENST00000557884 MTMR6Q9Y217 621 aa16.18■□□□□ 0.18
USP3-205ENST00000557884 PCDHB6Q9Y5E3 794 aa16.18■□□□□ 0.18
USP3-205ENST00000557884 EMSYQ7Z589 1322 aa16.18■□□□□ 0.18
USP3-205ENST00000557884 TBX3O15119 743 aa16.17■□□□□ 0.18
USP3-205ENST00000557884 STX6O43752 255 aa16.17■□□□□ 0.18
USP3-205ENST00000557884 CD4P01730 458 aa16.17■□□□□ 0.18
USP3-205ENST00000557884 PSAPP07602 524 aa16.17■□□□□ 0.18
USP3-205ENST00000557884 SMIM10L2AP0DMW4 78 aa16.17■□□□□ 0.18
USP3-205ENST00000557884 SMIM10L2BP0DMW5 78 aa16.17■□□□□ 0.18
USP3-205ENST00000557884 TXKP42681 527 aa16.17■□□□□ 0.18
USP3-205ENST00000557884 STAT5BP51692 787 aa16.17■□□□□ 0.18
USP3-205ENST00000557884 ZNF200P98182 395 aaPredicted RBP16.17■□□□□ 0.18
USP3-205ENST00000557884 BECN1Q14457 450 aa16.17■□□□□ 0.18
USP3-205ENST00000557884 FAM160B1Q5W0V3 765 aa16.17■□□□□ 0.18
USP3-205ENST00000557884 PDXDC2PQ6P474 469 aa16.17■□□□□ 0.18
USP3-205ENST00000557884 SEZ6LQ9BYH1 1024 aa16.17■□□□□ 0.18
USP3-205ENST00000557884 ZNF302Q9NR11 478 aa16.17■□□□□ 0.18
USP3-205ENST00000557884 ERAP1Q9NZ08 941 aa16.17■□□□□ 0.18
USP3-205ENST00000557884 GABBR1Q9UBS5 961 aa16.17■□□□□ 0.18
USP3-205ENST00000557884 GTF2IRD1Q9UHL9 959 aa16.17■□□□□ 0.18
USP3-205ENST00000557884 NOD1Q9Y239 953 aa16.17■□□□□ 0.18
USP3-205ENST00000557884 PCDHA10Q9Y5I2 948 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms