RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 C17orf102A2RUQ5 167 aa10.87□□□□□ -0.67
SYNE2-224ENST00000557024 PPFIA4O75335 1185 aa10.87□□□□□ -0.67
SYNE2-224ENST00000557024 EIF3JO75822 258 aaKnown RBP10.87□□□□□ -0.67
SYNE2-224ENST00000557024 RB1P06400 928 aa10.87□□□□□ -0.67
SYNE2-224ENST00000557024 GOLGA8HP0CJ92 632 aa10.87□□□□□ -0.67
SYNE2-224ENST00000557024 HOXD8P13378 290 aaPredicted RBP10.87□□□□□ -0.67
SYNE2-224ENST00000557024 ADAM15Q13444 863 aa10.87□□□□□ -0.67
SYNE2-224ENST00000557024 HSDL1Q3SXM5 330 aa10.87□□□□□ -0.67
SYNE2-224ENST00000557024 VPS53Q5VIR6 699 aa10.87□□□□□ -0.67
SYNE2-224ENST00000557024 ARHGEF16Q5VV41 709 aa10.87□□□□□ -0.67
SYNE2-224ENST00000557024 MSLNLQ96KJ4 702 aa10.87□□□□□ -0.67
SYNE2-224ENST00000557024 SPATA33Q96N06 139 aa10.87□□□□□ -0.67
SYNE2-224ENST00000557024 FSD1Q9BTV5 496 aa10.87□□□□□ -0.67
SYNE2-224ENST00000557024 UBA5Q9GZZ9 404 aa10.87□□□□□ -0.67
SYNE2-224ENST00000557024 ANAPC4Q9UJX5 808 aa10.87□□□□□ -0.67
SYNE2-224ENST00000557024 PCDHB15Q9Y5E8 787 aa10.87□□□□□ -0.67
SYNE2-224ENST00000557024 ADGRA3Q8IWK6 1321 aa10.86□□□□□ -0.67
SYNE2-224ENST00000557024 LOC730098B7Z3J9 87 aa10.86□□□□□ -0.67
SYNE2-224ENST00000557024 H0Y858 1186 aa10.86□□□□□ -0.67
SYNE2-224ENST00000557024 TREHO43280 583 aa10.86□□□□□ -0.67
SYNE2-224ENST00000557024 EYA4O95677 639 aa10.86□□□□□ -0.67
SYNE2-224ENST00000557024 MMP1P03956 469 aa10.86□□□□□ -0.67
SYNE2-224ENST00000557024 NR3C2P08235 984 aa10.86□□□□□ -0.67
SYNE2-224ENST00000557024 SMIM10L2AP0DMW4 78 aa10.86□□□□□ -0.67
SYNE2-224ENST00000557024 SMIM10L2BP0DMW5 78 aa10.86□□□□□ -0.67
SYNE2-224ENST00000557024 CDC37Q16543 378 aaPredicted RBP10.86□□□□□ -0.67
SYNE2-224ENST00000557024 MYSM1Q5VVJ2 828 aa10.86□□□□□ -0.67
SYNE2-224ENST00000557024 B4GALNT3Q6L9W6 998 aa10.86□□□□□ -0.67
SYNE2-224ENST00000557024 ADGRD2Q7Z7M1 963 aa10.86□□□□□ -0.67
SYNE2-224ENST00000557024 KRI1Q8N9T8 703 aaKnown RBP10.86□□□□□ -0.67
SYNE2-224ENST00000557024 SMRP1Q8NCR6 262 aa10.86□□□□□ -0.67
SYNE2-224ENST00000557024 DDX12PQ92771 950 aa10.86□□□□□ -0.67
SYNE2-224ENST00000557024 C16orf70Q9BSU1 422 aa10.86□□□□□ -0.67
SYNE2-224ENST00000557024 TLR9Q9NR96 1032 aa10.86□□□□□ -0.67
SYNE2-224ENST00000557024 CLEC1BQ9P126 229 aa10.86□□□□□ -0.67
SYNE2-224ENST00000557024 ABCB11O95342 1321 aa10.85□□□□□ -0.67
SYNE2-224ENST00000557024 GGPS1O95749 300 aa10.85□□□□□ -0.67
SYNE2-224ENST00000557024 FGRP09769 529 aa10.85□□□□□ -0.67
SYNE2-224ENST00000557024 SNHG28P0DPA3 235 aa10.85□□□□□ -0.67
SYNE2-224ENST00000557024 AVPR2P30518 371 aa10.85□□□□□ -0.67
SYNE2-224ENST00000557024 HOXC8P31273 242 aa10.85□□□□□ -0.67
SYNE2-224ENST00000557024 SIGLEC14Q08ET2 396 aa10.85□□□□□ -0.67
SYNE2-224ENST00000557024 CAMK1Q14012 370 aa10.85□□□□□ -0.67
SYNE2-224ENST00000557024 CBX2Q14781 532 aaPredicted RBP10.85□□□□□ -0.67
SYNE2-224ENST00000557024 TMEM132AQ24JP5 1023 aa10.85□□□□□ -0.67
SYNE2-224ENST00000557024 CELF3Q5SZQ8 465 aaKnown RBP10.85□□□□□ -0.67
SYNE2-224ENST00000557024 ASCL5Q7RTU5 278 aa10.85□□□□□ -0.67
SYNE2-224ENST00000557024 MCF2L2Q86YR7 1114 aa10.85□□□□□ -0.67
SYNE2-224ENST00000557024 APBB2Q92870 758 aa10.85□□□□□ -0.67
SYNE2-224ENST00000557024 CLP1Q92989 425 aaKnown RBP10.85□□□□□ -0.67
SYNE2-224ENST00000557024 ASIC4Q96FT7 647 aa10.85□□□□□ -0.67
SYNE2-224ENST00000557024 RPGRIP1Q96KN7 1286 aa10.85□□□□□ -0.67
SYNE2-224ENST00000557024 PXMP2Q9NR77 195 aa10.85□□□□□ -0.67
SYNE2-224ENST00000557024 TCP11L1Q9NUJ3 509 aa10.85□□□□□ -0.67
SYNE2-224ENST00000557024 BARX2Q9UMQ3 279 aaPredicted RBP10.85□□□□□ -0.67
SYNE2-224ENST00000557024 RWDD3Q9Y3V2 267 aa10.85□□□□□ -0.67
SYNE2-224ENST00000557024 USP15Q9Y4E8 981 aaPredicted RBP10.85□□□□□ -0.67
SYNE2-224ENST00000557024 SPTBN4Q9H254 2564 aa10.84□□□□□ -0.67
SYNE2-224ENST00000557024 H3BRB1 525 aa10.84□□□□□ -0.67
SYNE2-224ENST00000557024 CAND2O75155 1236 aa10.84□□□□□ -0.67
SYNE2-224ENST00000557024 KDM4AO75164 1064 aa10.84□□□□□ -0.67
SYNE2-224ENST00000557024 RGS20O76081 388 aa10.84□□□□□ -0.67
SYNE2-224ENST00000557024 MYCLP12524 364 aaPredicted RBP10.84□□□□□ -0.67
SYNE2-224ENST00000557024 UBA1P22314 1058 aaKnown RBP10.84□□□□□ -0.67
SYNE2-224ENST00000557024 DNAJB1P25685 340 aa10.84□□□□□ -0.67
SYNE2-224ENST00000557024 NRIP1P48552 1158 aa10.84□□□□□ -0.67
SYNE2-224ENST00000557024 BTG3Q14201 252 aaPredicted RBP10.84□□□□□ -0.67
SYNE2-224ENST00000557024 GPATCH4Q5T3I0 446 aaKnown RBP10.84□□□□□ -0.67
SYNE2-224ENST00000557024 PPP2R3CQ969Q6 453 aa10.84□□□□□ -0.67
SYNE2-224ENST00000557024 IRF2BPLQ9H1B7 796 aa10.84□□□□□ -0.67
SYNE2-224ENST00000557024 RNPEPQ9H4A4 650 aa10.84□□□□□ -0.67
SYNE2-224ENST00000557024 TUT1Q9H6E5 874 aaKnown RBP10.84□□□□□ -0.67
SYNE2-224ENST00000557024 RC3H2Q9HBD1 1191 aaKnown RBP10.84□□□□□ -0.67
SYNE2-224ENST00000557024 PLAGL2Q9UPG8 496 aa10.84□□□□□ -0.67
SYNE2-224ENST00000557024 CACNA1HO95180 2353 aa10.84□□□□□ -0.67
SYNE2-224ENST00000557024 MYO7AQ13402 2215 aa10.84□□□□□ -0.67
SYNE2-224ENST00000557024 MICAL3Q7RTP6 2002 aa10.84□□□□□ -0.67
SYNE2-224ENST00000557024 SNPHO15079 494 aa10.83□□□□□ -0.68
SYNE2-224ENST00000557024 CFBP00751 764 aa10.83□□□□□ -0.68
SYNE2-224ENST00000557024 PDGFBP01127 241 aaPredicted RBP10.83□□□□□ -0.68
SYNE2-224ENST00000557024 LGALS2P05162 132 aa10.83□□□□□ -0.68
SYNE2-224ENST00000557024 HSPD1P10809 573 aaKnown RBP10.83□□□□□ -0.68
SYNE2-224ENST00000557024 GHRP10912 638 aa10.83□□□□□ -0.68
SYNE2-224ENST00000557024 SP2Q02086 613 aa10.83□□□□□ -0.68
SYNE2-224ENST00000557024 COASYQ13057 564 aa10.83□□□□□ -0.68
SYNE2-224ENST00000557024 HDAC1Q13547 482 aaPredicted RBP10.83□□□□□ -0.68
SYNE2-224ENST00000557024 RBM23Q86U06 439 aaKnown RBP10.83□□□□□ -0.68
SYNE2-224ENST00000557024 ADGRF4Q8IZF3 695 aa10.83□□□□□ -0.68
SYNE2-224ENST00000557024 EFHBQ8N7U6 833 aa10.83□□□□□ -0.68
SYNE2-224ENST00000557024 PI4K2BQ8TCG2 481 aa10.83□□□□□ -0.68
SYNE2-224ENST00000557024 TTC14Q96N46 770 aa10.83□□□□□ -0.68
SYNE2-224ENST00000557024 PHF7Q9BWX1 381 aaPredicted RBP10.83□□□□□ -0.68
SYNE2-224ENST00000557024 MAF1Q9H063 256 aa10.83□□□□□ -0.68
SYNE2-224ENST00000557024 BCAS3Q9H6U6 928 aa10.83□□□□□ -0.68
SYNE2-224ENST00000557024 MLXIPQ9HAP2 919 aa10.83□□□□□ -0.68
SYNE2-224ENST00000557024 SETD4Q9NVD3 440 aa10.83□□□□□ -0.68
SYNE2-224ENST00000557024 MRPL11Q9Y3B7 192 aaKnown RBP10.83□□□□□ -0.68
SYNE2-224ENST00000557024 PCDHGC5Q9Y5F6 944 aa10.83□□□□□ -0.68
SYNE2-224ENST00000557024 PRR23AA6NEV1 266 aa10.82□□□□□ -0.68
SYNE2-224ENST00000557024 PROB1E7EW31 1015 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms