RNA–Protein interactions for RNA: ENST00000556994.5

SRP54-213, Transcript of signal recognition particle 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SRP54, Length 2,327 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-213ENST00000556994 RPS6KA1Q15418 735 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 MCTP2Q6DN12 878 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 PTF1AQ7RTS3 328 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 NLRP14Q86W24 1093 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 MREGQ8N565 214 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 SYN2Q92777 582 aaPredicted RBP12.5□□□□□ -0.41
SRP54-213ENST00000556994 NUCKS1Q9H1E3 243 aaKnown RBP12.5□□□□□ -0.41
SRP54-213ENST00000556994 PCDHA12Q9UN75 941 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 SPATA31A1Q5TZJ5 1347 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 MAST2Q6P0Q8 1798 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 ROBO1Q9Y6N7 1651 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 ESYT2A0FGR8 921 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 POTEB3A0JP26 581 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 A6NNZ2 444 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 POTECB2RU33 542 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 FLT3P36888 993 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 HSD17B3P37058 310 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 TNNC1P63316 161 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 IRX3P78415 501 aaPredicted RBP12.5□□□□□ -0.41
SRP54-213ENST00000556994 IFT88Q13099 833 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 TUBB8Q3ZCM7 444 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 POTEBQ6S5H4 581 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 TPTE2Q6XPS3 522 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 ZNF571Q7Z3V5 609 aaPredicted RBP12.5□□□□□ -0.41
SRP54-213ENST00000556994 MYCBPAPQ8TBZ2 947 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 WHAMMQ8TF30 809 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 SCFD1Q8WVM8 642 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 LRRC27Q9C0I9 530 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 NYXQ9GZU5 481 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 NEUROG2Q9H2A3 272 aa12.5□□□□□ -0.41
SRP54-213ENST00000556994 TAF1DQ9H5J8 278 aaPredicted RBP12.5□□□□□ -0.41
SRP54-213ENST00000556994 MYH4Q9Y623 1939 aa12.49□□□□□ -0.41
SRP54-213ENST00000556994 BACH1O14867 736 aa12.49□□□□□ -0.41
SRP54-213ENST00000556994 PPP1R11O60927 126 aaPredicted RBP12.49□□□□□ -0.41
SRP54-213ENST00000556994 LDHCP07864 332 aa12.49□□□□□ -0.41
SRP54-213ENST00000556994 ECHS1P30084 290 aa12.49□□□□□ -0.41
SRP54-213ENST00000556994 SLC16A2P36021 539 aa12.49□□□□□ -0.41
SRP54-213ENST00000556994 FNTAP49354 379 aa12.49□□□□□ -0.41
SRP54-213ENST00000556994 ORC2Q13416 577 aaPredicted RBP12.49□□□□□ -0.41
SRP54-213ENST00000556994 TTBK2Q6IQ55 1244 aa12.49□□□□□ -0.41
SRP54-213ENST00000556994 GPBP1Q86WP2 473 aa12.49□□□□□ -0.41
SRP54-213ENST00000556994 CD302Q8IX05 232 aa12.49□□□□□ -0.41
SRP54-213ENST00000556994 NAV1Q8NEY1 1877 aa12.49□□□□□ -0.41
SRP54-213ENST00000556994 DDX47Q9H0S4 455 aaKnown RBP12.49□□□□□ -0.41
SRP54-213ENST00000556994 GANQ9H2C0 597 aa12.49□□□□□ -0.41
SRP54-213ENST00000556994 BMP2KQ9NSY1 1161 aaPredicted RBP12.49□□□□□ -0.41
SRP54-213ENST00000556994 EMILIN3Q9NT22 766 aa12.49□□□□□ -0.41
SRP54-213ENST00000556994 AIPL1Q9NZN9 384 aa12.49□□□□□ -0.41
SRP54-213ENST00000556994 PCDHA2Q9Y5H9 948 aa12.49□□□□□ -0.41
SRP54-213ENST00000556994 COL14A1Q05707 1796 aaKnown RBP12.49□□□□□ -0.41
SRP54-213ENST00000556994 TMCO5BA8MYB1 307 aa12.49□□□□□ -0.41
SRP54-213ENST00000556994 KIF4AO95239 1232 aa12.49□□□□□ -0.41
SRP54-213ENST00000556994 PLA2G4BP0C869 781 aa12.49□□□□□ -0.41
SRP54-213ENST00000556994 TMOD1P28289 359 aa12.49□□□□□ -0.41
SRP54-213ENST00000556994 CASP5P51878 434 aa12.49□□□□□ -0.41
SRP54-213ENST00000556994 UAP1Q16222 522 aaPredicted RBP12.49□□□□□ -0.41
SRP54-213ENST00000556994 AMIGO3Q86WK7 504 aa12.49□□□□□ -0.41
SRP54-213ENST00000556994 CNPY4Q8N129 248 aa12.49□□□□□ -0.41
SRP54-213ENST00000556994 PRPF38AQ8NAV1 312 aaKnown RBP12.49□□□□□ -0.41
SRP54-213ENST00000556994 KCTD10Q9H3F6 313 aa12.49□□□□□ -0.41
SRP54-213ENST00000556994 TMBIM4Q9HC24 238 aa12.49□□□□□ -0.41
SRP54-213ENST00000556994 TMEM59LQ9UK28 342 aa12.49□□□□□ -0.41
SRP54-213ENST00000556994 DDX60LQ5H9U9 1706 aaKnown RBP12.48□□□□□ -0.41
SRP54-213ENST00000556994 GOLGA6L10A6NI86 522 aa12.48□□□□□ -0.41
SRP54-213ENST00000556994 HMGB1P1B2RPK0 211 aaPredicted RBP12.48□□□□□ -0.41
SRP54-213ENST00000556994 HSPA9P38646 679 aaKnown RBP12.48□□□□□ -0.41
SRP54-213ENST00000556994 STAT3P40763 770 aa12.48□□□□□ -0.41
SRP54-213ENST00000556994 PICALMQ13492 652 aa12.48□□□□□ -0.41
SRP54-213ENST00000556994 IRF2BP2Q7Z5L9 587 aa12.48□□□□□ -0.41
SRP54-213ENST00000556994 ADGRF4Q8IZF3 695 aa12.48□□□□□ -0.41
SRP54-213ENST00000556994 CEP63Q96MT8 703 aa12.48□□□□□ -0.41
SRP54-213ENST00000556994 ISCUQ9H1K1 167 aa12.48□□□□□ -0.41
SRP54-213ENST00000556994 JMJD4Q9H9V9 463 aa12.48□□□□□ -0.41
SRP54-213ENST00000556994 GCOM1H8Y6P7 765 aaPredicted RBP12.48□□□□□ -0.41
SRP54-213ENST00000556994 SART1O43290 800 aaKnown RBP12.48□□□□□ -0.41
SRP54-213ENST00000556994 KRT18P05783 430 aaKnown RBP12.48□□□□□ -0.41
SRP54-213ENST00000556994 MYZAPP0CAP1 466 aa12.48□□□□□ -0.41
SRP54-213ENST00000556994 MYBP10242 640 aa12.48□□□□□ -0.41
SRP54-213ENST00000556994 ITGA4P13612 1032 aa12.48□□□□□ -0.41
SRP54-213ENST00000556994 NR2F2P24468 414 aa12.48□□□□□ -0.41
SRP54-213ENST00000556994 SMARCA1P28370 1054 aa12.48□□□□□ -0.41
SRP54-213ENST00000556994 CTNNA1P35221 906 aaKnown RBP12.48□□□□□ -0.41
SRP54-213ENST00000556994 NT5C2P49902 561 aa12.48□□□□□ -0.41
SRP54-213ENST00000556994 CCDC65Q8IXS2 484 aa12.48□□□□□ -0.41
SRP54-213ENST00000556994 METTL13Q8N6R0 699 aa12.48□□□□□ -0.41
SRP54-213ENST00000556994 GPATCH11Q8N954 259 aa12.48□□□□□ -0.41
SRP54-213ENST00000556994 UBLCP1Q8WVY7 318 aaPredicted RBP12.48□□□□□ -0.41
SRP54-213ENST00000556994 SPAG5Q96R06 1193 aa12.48□□□□□ -0.41
SRP54-213ENST00000556994 LRRC4CQ9HCJ2 640 aa12.48□□□□□ -0.41
SRP54-213ENST00000556994 MTMR4Q9NYA4 1195 aa12.48□□□□□ -0.41
SRP54-213ENST00000556994 AMACRQ9UHK6 382 aa12.48□□□□□ -0.41
SRP54-213ENST00000556994 HDAC9Q9UKV0 1011 aa12.48□□□□□ -0.41
SRP54-213ENST00000556994 H0YGN5 161 aa12.47□□□□□ -0.41
SRP54-213ENST00000556994 GNPATO15228 680 aa12.47□□□□□ -0.41
SRP54-213ENST00000556994 AKR1B1P15121 316 aa12.47□□□□□ -0.41
SRP54-213ENST00000556994 ODF2Q5BJF6 829 aa12.47□□□□□ -0.41
SRP54-213ENST00000556994 PPP4R3AQ6IN85 833 aa12.47□□□□□ -0.41
SRP54-213ENST00000556994 ZNF804AQ7Z570 1209 aa12.47□□□□□ -0.41
SRP54-213ENST00000556994 RBM46Q8TBY0 533 aaKnown RBP12.47□□□□□ -0.41
SRP54-213ENST00000556994 SCFD2Q8WU76 684 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms