RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 INTS4Q96HW7 963 aaKnown RBP12.96□□□□□ -0.33
CCDC88C-212ENST00000556767 C16orf70Q9BSU1 422 aa12.96□□□□□ -0.33
CCDC88C-212ENST00000556767 AZI2Q9H6S1 392 aa12.96□□□□□ -0.33
CCDC88C-212ENST00000556767 ZNF215Q9UL58 517 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-212ENST00000556767 NOL7Q9UMY1 257 aaKnown RBP12.96□□□□□ -0.33
CCDC88C-212ENST00000556767 VPS37CA5D8V6 355 aaPredicted RBP12.95□□□□□ -0.34
CCDC88C-212ENST00000556767 H0YGN5 161 aa12.95□□□□□ -0.34
CCDC88C-212ENST00000556767 H3BRB1 525 aa12.95□□□□□ -0.34
CCDC88C-212ENST00000556767 BACH1O14867 736 aa12.95□□□□□ -0.34
CCDC88C-212ENST00000556767 DHX15O43143 795 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-212ENST00000556767 BAG4O95429 457 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-212ENST00000556767 CCNE2O96020 404 aa12.95□□□□□ -0.34
CCDC88C-212ENST00000556767 F2P00734 622 aa12.95□□□□□ -0.34
CCDC88C-212ENST00000556767 CLTBP09497 229 aa12.95□□□□□ -0.34
CCDC88C-212ENST00000556767 PDCP20941 246 aa12.95□□□□□ -0.34
CCDC88C-212ENST00000556767 MARK3P27448 753 aa12.95□□□□□ -0.34
CCDC88C-212ENST00000556767 CDK7P50613 346 aa12.95□□□□□ -0.34
CCDC88C-212ENST00000556767 KRT76Q01546 638 aa12.95□□□□□ -0.34
CCDC88C-212ENST00000556767 MIS18BP1Q6P0N0 1132 aa12.95□□□□□ -0.34
CCDC88C-212ENST00000556767 NFRKBQ6P4R8 1299 aa12.95□□□□□ -0.34
CCDC88C-212ENST00000556767 ANKRD33Q7Z3H0 272 aa12.95□□□□□ -0.34
CCDC88C-212ENST00000556767 SPRYD3Q8NCJ5 442 aa12.95□□□□□ -0.34
CCDC88C-212ENST00000556767 SLC5A5Q92911 643 aa12.95□□□□□ -0.34
CCDC88C-212ENST00000556767 MBOAT7Q96N66 472 aa12.95□□□□□ -0.34
CCDC88C-212ENST00000556767 RIT2Q99578 217 aa12.95□□□□□ -0.34
CCDC88C-212ENST00000556767 SEZ6LQ9BYH1 1024 aa12.95□□□□□ -0.34
CCDC88C-212ENST00000556767 TUT1Q9H6E5 874 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-212ENST00000556767 TMEM39AQ9NV64 488 aa12.95□□□□□ -0.34
CCDC88C-212ENST00000556767 NOD1Q9Y239 953 aa12.95□□□□□ -0.34
CCDC88C-212ENST00000556767 MCM7P33993 719 aa12.94□□□□□ -0.34
CCDC88C-212ENST00000556767 ZNF174Q15697 407 aa12.94□□□□□ -0.34
CCDC88C-212ENST00000556767 ZNF746Q6NUN9 644 aaPredicted RBP12.94□□□□□ -0.34
CCDC88C-212ENST00000556767 POTEDQ86YR6 584 aa12.94□□□□□ -0.34
CCDC88C-212ENST00000556767 FAM126BQ8IXS8 530 aa12.94□□□□□ -0.34
CCDC88C-212ENST00000556767 SLC43A3Q8NBI5 491 aa12.94□□□□□ -0.34
CCDC88C-212ENST00000556767 TOX2Q96NM4 488 aa12.94□□□□□ -0.34
CCDC88C-212ENST00000556767 TRPV6Q9H1D0 765 aa12.94□□□□□ -0.34
CCDC88C-212ENST00000556767 SMARCAD1Q9H4L7 1026 aa12.94□□□□□ -0.34
CCDC88C-212ENST00000556767 TRMT13Q9NUP7 481 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-212ENST00000556767 HDAC6Q9UBN7 1215 aa12.94□□□□□ -0.34
CCDC88C-212ENST00000556767 SCN10AQ9Y5Y9 1956 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 HAS3O00219 553 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 WNT7AO00755 349 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 B4GALT4O60513 344 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 NEMFO60524 1076 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 PSAPP07602 524 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 SUPT20HL2P0C7V6 817 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 RAG1P15918 1043 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 U2AF2P26368 475 aaKnown RBP eCLIP12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 STAT5BP51692 787 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 PTPN11Q06124 597 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 FAAP100Q0VG06 881 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 CALCRLQ16602 461 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 PTGISQ16647 500 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 TTC38Q5R3I4 469 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 FAM160B1Q5W0V3 765 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 SWSAP1Q6NVH7 229 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 MIER3Q7Z3K6 550 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 SH3RF1Q7Z6J0 888 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 SMAP1Q8IYB5 467 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 ETNPPLQ8TBG4 499 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 FAM20AQ96MK3 541 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 UNC45AQ9H3U1 944 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 ZNF302Q9NR11 478 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 PDLIM7Q9NR12 457 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 ERAP1Q9NZ08 941 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 PCDH10Q9P2E7 1040 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 TRPC6Q9Y210 931 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 PCDHA10Q9Y5I2 948 aa12.93□□□□□ -0.34
CCDC88C-212ENST00000556767 EMSYQ7Z589 1322 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 WDR64B1ANS9 1081 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 TBX3O15119 743 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 LGR5O75473 907 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 PSMD10O75832 226 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 ATG7O95352 703 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 SMIM10L2AP0DMW4 78 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 SMIM10L2BP0DMW5 78 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 SYT1P21579 422 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 SFNP31947 248 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 TRAPPC10P48553 1259 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 JAK3P52333 1124 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 NBR1Q14596 966 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 GDF6Q6KF10 455 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 PDXDC2PQ6P474 469 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 ABHD15Q6UXT9 468 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 TRMT1LQ7Z2T5 733 aaKnown RBP12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 FERMT3Q86UX7 667 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 CKAP2LQ8IYA6 745 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 SLFN12Q8IYM2 578 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 PCYT2Q99447 389 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 LBHD1Q9BQE6 289 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 PPP1R12CQ9BZL4 782 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 RNPEPQ9H4A4 650 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 KCNMB3Q9NPA1 279 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 DISC1Q9NRI5 854 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 GABBR1Q9UBS5 961 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 GTF2IRD1Q9UHL9 959 aa12.92□□□□□ -0.34
CCDC88C-212ENST00000556767 C17orf102A2RUQ5 167 aa12.91□□□□□ -0.34
CCDC88C-212ENST00000556767 TRIM43BA6NCK2 446 aa12.91□□□□□ -0.34
CCDC88C-212ENST00000556767 CD4P01730 458 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms