RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 IFNL2Q8IZJ0 200 aa5.9□□□□□ -1.46
SCFD1-218ENST00000556256 STPG3Q8N7X2 389 aa5.9□□□□□ -1.46
SCFD1-218ENST00000556256 JAM3Q9BX67 310 aa5.9□□□□□ -1.46
SCFD1-218ENST00000556256 SLC6A20Q9NP91 592 aa5.9□□□□□ -1.46
SCFD1-218ENST00000556256 ZFP69BQ9UJL9 534 aa5.9□□□□□ -1.46
SCFD1-218ENST00000556256 KRIT1O00522 736 aa5.89□□□□□ -1.47
SCFD1-218ENST00000556256 SLC27A2O14975 620 aa5.89□□□□□ -1.47
SCFD1-218ENST00000556256 NANOS3P60323 173 aaKnown RBP5.89□□□□□ -1.47
SCFD1-218ENST00000556256 SV2CQ496J9 727 aa5.89□□□□□ -1.47
SCFD1-218ENST00000556256 TMEM145Q8NBT3 493 aa5.89□□□□□ -1.47
SCFD1-218ENST00000556256 PIP4K2CQ8TBX8 421 aa5.89□□□□□ -1.47
SCFD1-218ENST00000556256 KCND1Q9NSA2 647 aa5.89□□□□□ -1.47
SCFD1-218ENST00000556256 LRP2BPQ9P2M1 347 aa5.89□□□□□ -1.47
SCFD1-218ENST00000556256 A0A087X1B8 175 aa5.88□□□□□ -1.47
SCFD1-218ENST00000556256 RAD17O75943 681 aa5.88□□□□□ -1.47
SCFD1-218ENST00000556256 ZNF888P0CJ79 500 aaPredicted RBP5.88□□□□□ -1.47
SCFD1-218ENST00000556256 INHBCP55103 352 aa5.88□□□□□ -1.47
SCFD1-218ENST00000556256 GFRA1P56159 465 aa5.88□□□□□ -1.47
SCFD1-218ENST00000556256 RAC3P60763 192 aa5.88□□□□□ -1.47
SCFD1-218ENST00000556256 USP10Q14694 798 aaKnown RBP5.88□□□□□ -1.47
SCFD1-218ENST00000556256 C1orf210Q8IVY1 113 aa5.88□□□□□ -1.47
SCFD1-218ENST00000556256 REXO1L1PQ8IX06 675 aa5.88□□□□□ -1.47
SCFD1-218ENST00000556256 ARHGAP20Q9P2F6 1191 aa5.88□□□□□ -1.47
SCFD1-218ENST00000556256 NPFFR2Q9Y5X5 522 aa5.88□□□□□ -1.47
SCFD1-218ENST00000556256 C1SP09871 688 aa5.87□□□□□ -1.47
SCFD1-218ENST00000556256 FAHP16930 419 aa5.87□□□□□ -1.47
SCFD1-218ENST00000556256 GJA8P48165 433 aa5.87□□□□□ -1.47
SCFD1-218ENST00000556256 PFKPQ01813 784 aa5.87□□□□□ -1.47
SCFD1-218ENST00000556256 METTL16Q86W50 562 aaKnown RBP5.87□□□□□ -1.47
SCFD1-218ENST00000556256 IL17DQ8TAD2 202 aa5.87□□□□□ -1.47
SCFD1-218ENST00000556256 NEU4Q8WWR8 484 aaPredicted RBP5.87□□□□□ -1.47
SCFD1-218ENST00000556256 C1orf159Q96HA4 380 aa5.87□□□□□ -1.47
SCFD1-218ENST00000556256 H0Y858 1186 aa5.86□□□□□ -1.47
SCFD1-218ENST00000556256 IL18BPO95998 194 aa5.86□□□□□ -1.47
SCFD1-218ENST00000556256 ENO2P09104 434 aaPredicted RBP5.86□□□□□ -1.47
SCFD1-218ENST00000556256 CR2P20023 1033 aa5.86□□□□□ -1.47
SCFD1-218ENST00000556256 TUSC3Q13454 348 aa5.86□□□□□ -1.47
SCFD1-218ENST00000556256 KRTAP15-1Q3LI76 137 aa5.86□□□□□ -1.47
SCFD1-218ENST00000556256 PAN2Q504Q3 1202 aaKnown RBP5.86□□□□□ -1.47
SCFD1-218ENST00000556256 SLC35F1Q5T1Q4 408 aa5.86□□□□□ -1.47
SCFD1-218ENST00000556256 MAMDC4Q6UXC1 1216 aa5.86□□□□□ -1.47
SCFD1-218ENST00000556256 ANAPC16Q96DE5 110 aa5.86□□□□□ -1.47
SCFD1-218ENST00000556256 SEC16BQ96JE7 1060 aa5.86□□□□□ -1.47
SCFD1-218ENST00000556256 PLEKHG4BQ96PX9 1271 aa5.86□□□□□ -1.47
SCFD1-218ENST00000556256 CARD11Q9BXL7 1154 aa5.86□□□□□ -1.47
SCFD1-218ENST00000556256 SCAMP3O14828 347 aaKnown RBP5.85□□□□□ -1.47
SCFD1-218ENST00000556256 LTFP02788 710 aa5.85□□□□□ -1.47
SCFD1-218ENST00000556256 CAPNS1P04632 268 aa5.85□□□□□ -1.47
SCFD1-218ENST00000556256 RNF151Q2KHN1 245 aa5.85□□□□□ -1.47
SCFD1-218ENST00000556256 CD276Q5ZPR3 534 aa5.85□□□□□ -1.47
SCFD1-218ENST00000556256 C6orf15Q6UXA7 325 aaPredicted RBP5.85□□□□□ -1.47
SCFD1-218ENST00000556256 POLNQ7Z5Q5 900 aa5.85□□□□□ -1.47
SCFD1-218ENST00000556256 CACTINQ8WUQ7 758 aaKnown RBP5.85□□□□□ -1.47
SCFD1-218ENST00000556256 PDGFDQ9GZP0 370 aaPredicted RBP5.85□□□□□ -1.47
SCFD1-218ENST00000556256 OAZ3Q9UMX2 235 aa5.85□□□□□ -1.47
SCFD1-218ENST00000556256 SLC30A1Q9Y6M5 507 aa5.85□□□□□ -1.47
SCFD1-218ENST00000556256 U2SURPO15042 1029 aaKnown RBP5.84□□□□□ -1.47
SCFD1-218ENST00000556256 NOLC1Q14978 699 aaKnown RBP eCLIP5.84□□□□□ -1.47
SCFD1-218ENST00000556256 ZNF568Q3ZCX4 644 aa5.84□□□□□ -1.47
SCFD1-218ENST00000556256 FNDC7Q5VTL7 733 aa5.84□□□□□ -1.47
SCFD1-218ENST00000556256 DNAJC10Q8IXB1 793 aa5.84□□□□□ -1.47
SCFD1-218ENST00000556256 DPYSL5Q9BPU6 564 aa5.84□□□□□ -1.47
SCFD1-218ENST00000556256 TACO1Q9BSH4 297 aaKnown RBP5.84□□□□□ -1.47
SCFD1-218ENST00000556256 PPARGC1AQ9UBK2 798 aaKnown RBP5.84□□□□□ -1.47
SCFD1-218ENST00000556256 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.84□□□□□ -1.47
SCFD1-218ENST00000556256 ZNF839A8K0R7 811 aa5.83□□□□□ -1.48
SCFD1-218ENST00000556256 MSCO60682 206 aa5.83□□□□□ -1.48
SCFD1-218ENST00000556256 COL6A2P12110 1019 aa5.83□□□□□ -1.48
SCFD1-218ENST00000556256 OTOP3Q7RTS5 596 aa5.83□□□□□ -1.48
SCFD1-218ENST00000556256 LDLRAD3Q86YD5 345 aa5.83□□□□□ -1.48
SCFD1-218ENST00000556256 FAM178BQ8IXR5 827 aa5.83□□□□□ -1.48
SCFD1-218ENST00000556256 FAM89AQ96GI7 184 aa5.83□□□□□ -1.48
SCFD1-218ENST00000556256 TELO2Q9Y4R8 837 aa5.83□□□□□ -1.48
SCFD1-218ENST00000556256 SUSD5O60279 629 aa5.82□□□□□ -1.48
SCFD1-218ENST00000556256 CDC14BO60729 498 aa5.82□□□□□ -1.48
SCFD1-218ENST00000556256 ACRV1P26436 265 aa5.82□□□□□ -1.48
SCFD1-218ENST00000556256 POLD1P28340 1107 aa5.82□□□□□ -1.48
SCFD1-218ENST00000556256 GRIA2P42262 883 aa5.82□□□□□ -1.48
SCFD1-218ENST00000556256 DUSP8Q13202 625 aa5.82□□□□□ -1.48
SCFD1-218ENST00000556256 LARP4BQ92615 738 aaKnown RBP5.82□□□□□ -1.48
SCFD1-218ENST00000556256 ZG16BQ96DA0 208 aa5.82□□□□□ -1.48
SCFD1-218ENST00000556256 OR14A2Q96R54 314 aa5.82□□□□□ -1.48
SCFD1-218ENST00000556256 MMRN2Q9H8L6 949 aa5.82□□□□□ -1.48
SCFD1-218ENST00000556256 GPR27Q9NS67 375 aa5.82□□□□□ -1.48
SCFD1-218ENST00000556256 STRIP2Q9ULQ0 834 aa5.82□□□□□ -1.48
SCFD1-218ENST00000556256 TNFRSF18Q9Y5U5 241 aa5.82□□□□□ -1.48
SCFD1-218ENST00000556256 ESYT3A0FGR9 886 aa5.81□□□□□ -1.48
SCFD1-218ENST00000556256 MATN2O00339 956 aa5.81□□□□□ -1.48
SCFD1-218ENST00000556256 RECKO95980 971 aa5.81□□□□□ -1.48
SCFD1-218ENST00000556256 TOP3AQ13472 1001 aaPredicted RBP5.81□□□□□ -1.48
SCFD1-218ENST00000556256 TUBA3CQ13748 450 aa5.81□□□□□ -1.48
SCFD1-218ENST00000556256 TUBA3EQ6PEY2 450 aa5.81□□□□□ -1.48
SCFD1-218ENST00000556256 ZNF808Q8N4W9 903 aaPredicted RBP5.81□□□□□ -1.48
SCFD1-218ENST00000556256 UHMK1Q8TAS1 419 aaKnown RBP5.81□□□□□ -1.48
SCFD1-218ENST00000556256 PLA2G12BQ9BX93 195 aa5.81□□□□□ -1.48
SCFD1-218ENST00000556256 PCSK5Q92824 1860 aa5.81□□□□□ -1.48
SCFD1-218ENST00000556256 B2RBV5 119 aa5.8□□□□□ -1.48
SCFD1-218ENST00000556256 ACOT7O00154 380 aa5.8□□□□□ -1.48
SCFD1-218ENST00000556256 NKRFO15226 690 aaKnown RBP eCLIP5.8□□□□□ -1.48
SCFD1-218ENST00000556256 CUTAO60888 179 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms