RNA–Protein interactions for RNA: ENST00000555022.5

SYNE2-217, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,396 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-217ENST00000555022 BAP1Q92560 729 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 PCDHA6Q9UN73 950 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 PCDHA8Q9Y5H6 950 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 IGF2BP3O00425 579 aaKnown RBP eCLIP9.71□□□□□ -0.85
SYNE2-217ENST00000555022 MPHOSPH10O00566 681 aaKnown RBP9.71□□□□□ -0.85
SYNE2-217ENST00000555022 EPB41P11171 864 aaKnown RBP9.71□□□□□ -0.85
SYNE2-217ENST00000555022 MAP2K1Q02750 393 aaPredicted RBP9.71□□□□□ -0.85
SYNE2-217ENST00000555022 CHRNDQ07001 517 aa9.71□□□□□ -0.85
SYNE2-217ENST00000555022 KCNMA1Q12791 1236 aa9.71□□□□□ -0.85
SYNE2-217ENST00000555022 UBE2SQ16763 222 aa9.71□□□□□ -0.85
SYNE2-217ENST00000555022 MEX3CQ5U5Q3 659 aaKnown RBP9.71□□□□□ -0.85
SYNE2-217ENST00000555022 ELOA2Q8IYF1 753 aaPredicted RBP9.71□□□□□ -0.85
SYNE2-217ENST00000555022 ARFGAP2Q8N6H7 521 aa9.71□□□□□ -0.85
SYNE2-217ENST00000555022 C4orf32Q8N8J7 132 aa9.71□□□□□ -0.85
SYNE2-217ENST00000555022 SPDYE1Q8NFV5 336 aaPredicted RBP9.71□□□□□ -0.85
SYNE2-217ENST00000555022 OSGEPQ9NPF4 335 aa9.71□□□□□ -0.85
SYNE2-217ENST00000555022 FGFR1OP2Q9NVK5 253 aa9.71□□□□□ -0.85
SYNE2-217ENST00000555022 G3BP2Q9UN86 482 aaKnown RBP9.71□□□□□ -0.85
SYNE2-217ENST00000555022 NFAT5O94916 1531 aa9.71□□□□□ -0.86
SYNE2-217ENST00000555022 MEIS1O00470 390 aa9.71□□□□□ -0.86
SYNE2-217ENST00000555022 CSF1RP07333 972 aa9.71□□□□□ -0.86
SYNE2-217ENST00000555022 PTK2Q05397 1052 aa9.71□□□□□ -0.86
SYNE2-217ENST00000555022 SLC35G1Q2M3R5 365 aa9.71□□□□□ -0.86
SYNE2-217ENST00000555022 SV2BQ7L1I2 683 aa9.71□□□□□ -0.86
SYNE2-217ENST00000555022 TBCKQ8TEA7 893 aa9.71□□□□□ -0.86
SYNE2-217ENST00000555022 CALML4Q96GE6 196 aa9.71□□□□□ -0.86
SYNE2-217ENST00000555022 ACSBG1Q96GR2 724 aa9.71□□□□□ -0.86
SYNE2-217ENST00000555022 DHTKD1Q96HY7 919 aaPredicted RBP9.71□□□□□ -0.86
SYNE2-217ENST00000555022 XPO6Q96QU8 1125 aaKnown RBP9.71□□□□□ -0.86
SYNE2-217ENST00000555022 KIF1CO43896 1103 aaKnown RBP9.71□□□□□ -0.86
SYNE2-217ENST00000555022 ACSL3O95573 720 aa9.71□□□□□ -0.86
SYNE2-217ENST00000555022 OR52Z1P0C646 297 aa9.71□□□□□ -0.86
SYNE2-217ENST00000555022 SLURP2P0DP57 97 aa9.71□□□□□ -0.86
SYNE2-217ENST00000555022 DRD4P21917 467 aa9.71□□□□□ -0.86
SYNE2-217ENST00000555022 ALDH5A1P51649 535 aaPredicted RBP9.71□□□□□ -0.86
SYNE2-217ENST00000555022 PLS1Q14651 629 aa9.71□□□□□ -0.86
SYNE2-217ENST00000555022 MAN2A1Q16706 1144 aa9.71□□□□□ -0.86
SYNE2-217ENST00000555022 PFKFB3Q16875 520 aaPredicted RBP9.71□□□□□ -0.86
SYNE2-217ENST00000555022 HP1BP3Q5SSJ5 553 aaPredicted RBP9.71□□□□□ -0.86
SYNE2-217ENST00000555022 SUSD4Q5VX71 490 aa9.71□□□□□ -0.86
SYNE2-217ENST00000555022 HGSNATQ68CP4 663 aa9.71□□□□□ -0.86
SYNE2-217ENST00000555022 CUL5Q93034 780 aa9.71□□□□□ -0.86
SYNE2-217ENST00000555022 INPP4AQ96PE3 977 aaPredicted RBP9.71□□□□□ -0.86
SYNE2-217ENST00000555022 PSMD1Q99460 953 aa9.71□□□□□ -0.86
SYNE2-217ENST00000555022 FAM118BQ9BPY3 351 aa9.71□□□□□ -0.86
SYNE2-217ENST00000555022 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.71□□□□□ -0.86
SYNE2-217ENST00000555022 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.71□□□□□ -0.86
SYNE2-217ENST00000555022 ARHGAP23Q9P227 1491 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 CLIC2O15247 247 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 GFPT2O94808 682 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 DIXDC1Q155Q3 683 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 FAM182AQ5T1J6 154 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 DDX12PQ92771 950 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 ZNF622Q969S3 477 aaKnown RBP eCLIP9.7□□□□□ -0.86
SYNE2-217ENST00000555022 CHMP6Q96FZ7 201 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 KCNQ5Q9NR82 932 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 INTS9Q9NV88 658 aaKnown RBP9.7□□□□□ -0.86
SYNE2-217ENST00000555022 CTNNAL1Q9UBT7 734 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 SLC12A6Q9UHW9 1150 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 PCDHA4Q9UN74 947 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 WDR17Q8IZU2 1322 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 MYH2Q9UKX2 1941 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 SMCO2A6NFE2 343 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 CCT8L1PA6NM43 557 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 E9PMD0 336 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 TAL1P17542 331 aaPredicted RBP9.7□□□□□ -0.86
SYNE2-217ENST00000555022 KCNJ1P48048 391 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 DDR1Q08345 913 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 ALX1Q15699 326 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 C6orf89Q6UWU4 347 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 GIGYF2Q6Y7W6 1299 aaKnown RBP9.7□□□□□ -0.86
SYNE2-217ENST00000555022 CPNE8Q86YQ8 564 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 SH3RF3Q8TEJ3 882 aaPredicted RBP9.7□□□□□ -0.86
SYNE2-217ENST00000555022 PIGBQ92521 554 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 ECT2Q9H8V3 914 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 KBTBD4Q9NVX7 518 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 SAMD15Q9P1V8 674 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 SLAIN2Q9P270 581 aa9.7□□□□□ -0.86
SYNE2-217ENST00000555022 SFI1A8K8P3 1242 aa9.69□□□□□ -0.86
SYNE2-217ENST00000555022 RGS16O15492 202 aaPredicted RBP9.69□□□□□ -0.86
SYNE2-217ENST00000555022 CYTH3O43739 400 aa9.69□□□□□ -0.86
SYNE2-217ENST00000555022 SLC37A4O43826 429 aa9.69□□□□□ -0.86
SYNE2-217ENST00000555022 PDE8AO60658 829 aa9.69□□□□□ -0.86
SYNE2-217ENST00000555022 ECHS1P30084 290 aa9.69□□□□□ -0.86
SYNE2-217ENST00000555022 MTM1Q13496 603 aa9.69□□□□□ -0.86
SYNE2-217ENST00000555022 HERC4Q5GLZ8 1057 aaPredicted RBP9.69□□□□□ -0.86
SYNE2-217ENST00000555022 RFX8Q6ZV50 586 aa9.69□□□□□ -0.86
SYNE2-217ENST00000555022 MAPKAPK5Q8IW41 473 aa9.69□□□□□ -0.86
SYNE2-217ENST00000555022 RDH13Q8NBN7 331 aa9.69□□□□□ -0.86
SYNE2-217ENST00000555022 WHAMMQ8TF30 809 aa9.69□□□□□ -0.86
SYNE2-217ENST00000555022 TATDN2Q93075 761 aa9.69□□□□□ -0.86
SYNE2-217ENST00000555022 PWWP2AQ96N64 755 aa9.69□□□□□ -0.86
SYNE2-217ENST00000555022 ZNF570Q96NI8 536 aa9.69□□□□□ -0.86
SYNE2-217ENST00000555022 ERGIC2Q96RQ1 377 aa9.69□□□□□ -0.86
SYNE2-217ENST00000555022 POP1Q99575 1024 aaKnown RBP9.69□□□□□ -0.86
SYNE2-217ENST00000555022 CARD10Q9BWT7 1032 aa9.69□□□□□ -0.86
SYNE2-217ENST00000555022 PPP1R12CQ9BZL4 782 aa9.69□□□□□ -0.86
SYNE2-217ENST00000555022 GPCPD1Q9NPB8 672 aa9.69□□□□□ -0.86
SYNE2-217ENST00000555022 ECM29Q5VYK3 1845 aa9.69□□□□□ -0.86
SYNE2-217ENST00000555022 TCP11X1B4DZS4 312 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms