RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 NRCAMQ92823 1304 aa18.3■□□□□ 0.52
CCDC88C-209ENST00000554872 CPLX2Q6PUV4 134 aaKnown RBP18.3■□□□□ 0.52
CCDC88C-209ENST00000554872 RPAINQ86UA6 219 aa18.3■□□□□ 0.52
CCDC88C-209ENST00000554872 TRIM50Q86XT4 487 aa18.3■□□□□ 0.52
CCDC88C-209ENST00000554872 CYP2W1Q8TAV3 490 aa18.3■□□□□ 0.52
CCDC88C-209ENST00000554872 PHOSPHO2Q8TCD6 241 aa18.3■□□□□ 0.52
CCDC88C-209ENST00000554872 TIFAQ96CG3 184 aa18.3■□□□□ 0.52
CCDC88C-209ENST00000554872 SLC26A6Q9BXS9 759 aa18.3■□□□□ 0.52
CCDC88C-209ENST00000554872 RNPEPQ9H4A4 650 aa18.3■□□□□ 0.52
CCDC88C-209ENST00000554872 AGO4Q9HCK5 861 aaKnown RBP18.3■□□□□ 0.52
CCDC88C-209ENST00000554872 ERAP1Q9NZ08 941 aa18.3■□□□□ 0.52
CCDC88C-209ENST00000554872 SLC9A2Q9UBY0 812 aa18.3■□□□□ 0.52
CCDC88C-209ENST00000554872 TELO2Q9Y4R8 837 aa18.3■□□□□ 0.52
CCDC88C-209ENST00000554872 IGLV3-22A0A075B6J6 115 aa18.29■□□□□ 0.52
CCDC88C-209ENST00000554872 DEXIO95424 95 aa18.29■□□□□ 0.52
CCDC88C-209ENST00000554872 CIITAP33076 1130 aa18.29■□□□□ 0.52
CCDC88C-209ENST00000554872 CCT2P78371 535 aaKnown RBP18.29■□□□□ 0.52
CCDC88C-209ENST00000554872 SETQ01105 290 aaPredicted RBP18.29■□□□□ 0.52
CCDC88C-209ENST00000554872 ANKRD1Q15327 319 aa18.29■□□□□ 0.52
CCDC88C-209ENST00000554872 ATP6V0A1Q93050 837 aa18.29■□□□□ 0.52
CCDC88C-209ENST00000554872 WNT8BQ93098 351 aa18.29■□□□□ 0.52
CCDC88C-209ENST00000554872 PGBD1Q96JS3 809 aa18.29■□□□□ 0.52
CCDC88C-209ENST00000554872 SLC9A7Q96T83 725 aa18.29■□□□□ 0.52
CCDC88C-209ENST00000554872 SDF4Q9BRK5 362 aa18.29■□□□□ 0.52
CCDC88C-209ENST00000554872 SMARCAD1Q9H4L7 1026 aa18.29■□□□□ 0.52
CCDC88C-209ENST00000554872 TRIP12Q14669 1992 aaPredicted RBP18.29■□□□□ 0.52
CCDC88C-209ENST00000554872 FAM86B1E9PN63 330 aa18.28■□□□□ 0.52
CCDC88C-209ENST00000554872 CPLX1O14810 134 aa18.28■□□□□ 0.52
CCDC88C-209ENST00000554872 EFCAB14O75071 495 aa18.28■□□□□ 0.52
CCDC88C-209ENST00000554872 ATG7O95352 703 aa18.28■□□□□ 0.52
CCDC88C-209ENST00000554872 FAM86B2P0C5J1 330 aa18.28■□□□□ 0.52
CCDC88C-209ENST00000554872 ARP10275 920 aa18.28■□□□□ 0.52
CCDC88C-209ENST00000554872 ZNF200P98182 395 aaPredicted RBP18.28■□□□□ 0.52
CCDC88C-209ENST00000554872 SSRP1Q08945 709 aaKnown RBP18.28■□□□□ 0.52
CCDC88C-209ENST00000554872 ITGB3BPQ13352 177 aaPredicted RBP18.28■□□□□ 0.52
CCDC88C-209ENST00000554872 JAKMIP3Q5VZ66 844 aa18.28■□□□□ 0.52
CCDC88C-209ENST00000554872 GALNT17Q6IS24 598 aa18.28■□□□□ 0.52
CCDC88C-209ENST00000554872 DEFB128Q7Z7B8 93 aa18.28■□□□□ 0.52
CCDC88C-209ENST00000554872 PCDHA11Q9Y5I1 949 aa18.28■□□□□ 0.52
CCDC88C-209ENST00000554872 TET1Q8NFU7 2136 aa18.28■□□□□ 0.52
CCDC88C-209ENST00000554872 STK36Q9NRP7 1315 aa18.27■□□□□ 0.52
CCDC88C-209ENST00000554872 IGKV6D-21A0A0A0MT36 114 aa18.27■□□□□ 0.52
CCDC88C-209ENST00000554872 MBLAC1A4D2B0 266 aaPredicted RBP18.27■□□□□ 0.52
CCDC88C-209ENST00000554872 NBNO60934 754 aa18.27■□□□□ 0.52
CCDC88C-209ENST00000554872 CDKL5O76039 1030 aa18.27■□□□□ 0.52
CCDC88C-209ENST00000554872 RPLP2P05387 115 aaKnown RBP18.27■□□□□ 0.52
CCDC88C-209ENST00000554872 ATP2A2P16615 1042 aaKnown RBP18.27■□□□□ 0.52
CCDC88C-209ENST00000554872 SLC26A2P50443 739 aa18.27■□□□□ 0.52
CCDC88C-209ENST00000554872 ZNF618Q5T7W0 954 aa18.27■□□□□ 0.52
CCDC88C-209ENST00000554872 UTP14CQ5TAP6 766 aaKnown RBP18.27■□□□□ 0.52
CCDC88C-209ENST00000554872 TAF2Q6P1X5 1199 aa18.27■□□□□ 0.52
CCDC88C-209ENST00000554872 CNKSR3Q6P9H4 555 aa18.27■□□□□ 0.52
CCDC88C-209ENST00000554872 PLPPR4Q7Z2D5 763 aa18.27■□□□□ 0.52
CCDC88C-209ENST00000554872 DAGLBQ8NCG7 672 aa18.27■□□□□ 0.52
CCDC88C-209ENST00000554872 LMBR1Q8WVP7 490 aa18.27■□□□□ 0.52
CCDC88C-209ENST00000554872 CDX2Q99626 313 aaPredicted RBP18.27■□□□□ 0.52
CCDC88C-209ENST00000554872 C22orf23Q9BZE7 217 aa18.27■□□□□ 0.52
CCDC88C-209ENST00000554872 ZNF576Q9H609 170 aa18.27■□□□□ 0.52
CCDC88C-209ENST00000554872 CHD7Q9P2D1 2997 aa18.27■□□□□ 0.52
CCDC88C-209ENST00000554872 MSRAQ9UJ68 235 aa18.27■□□□□ 0.52
CCDC88C-209ENST00000554872 GRXCR1A8MXD5 290 aa18.26■□□□□ 0.51
CCDC88C-209ENST00000554872 ADAMTS3O15072 1205 aa18.26■□□□□ 0.51
CCDC88C-209ENST00000554872 TREHO43280 583 aa18.26■□□□□ 0.51
CCDC88C-209ENST00000554872 PFKFB2O60825 505 aa18.26■□□□□ 0.51
CCDC88C-209ENST00000554872 ACTR2P61160 394 aa18.26■□□□□ 0.51
CCDC88C-209ENST00000554872 SP4Q02446 784 aa18.26■□□□□ 0.51
CCDC88C-209ENST00000554872 MKRN4PQ13434 485 aaPredicted RBP18.26■□□□□ 0.51
CCDC88C-209ENST00000554872 MBTPS1Q14703 1052 aa18.26■□□□□ 0.51
CCDC88C-209ENST00000554872 FAM26DQ5JW98 314 aa18.26■□□□□ 0.51
CCDC88C-209ENST00000554872 TNPO1Q92973 898 aaKnown RBP18.26■□□□□ 0.51
CCDC88C-209ENST00000554872 PCYT2Q99447 389 aa18.26■□□□□ 0.51
CCDC88C-209ENST00000554872 FTOQ9C0B1 505 aaKnown RBP eCLIP18.26■□□□□ 0.51
CCDC88C-209ENST00000554872 SETD4Q9NVD3 440 aa18.26■□□□□ 0.51
CCDC88C-209ENST00000554872 VPS54Q9P1Q0 977 aa18.26■□□□□ 0.51
CCDC88C-209ENST00000554872 ABHD14A-ACY1A0A1B0GW23 586 aa18.25■□□□□ 0.51
CCDC88C-209ENST00000554872 M0R2N6 131 aa18.25■□□□□ 0.51
CCDC88C-209ENST00000554872 IPO5O00410 1097 aaKnown RBP18.25■□□□□ 0.51
CCDC88C-209ENST00000554872 DHX15O43143 795 aaKnown RBP18.25■□□□□ 0.51
CCDC88C-209ENST00000554872 ZNF76P36508 570 aa18.25■□□□□ 0.51
CCDC88C-209ENST00000554872 PBX2P40425 430 aa18.25■□□□□ 0.51
CCDC88C-209ENST00000554872 USP11P51784 963 aa18.25■□□□□ 0.51
CCDC88C-209ENST00000554872 SCRN1Q12765 414 aa18.25■□□□□ 0.51
CCDC88C-209ENST00000554872 PLA2G4DQ86XP0 818 aa18.25■□□□□ 0.51
CCDC88C-209ENST00000554872 AZI2Q9H6S1 392 aa18.25■□□□□ 0.51
CCDC88C-209ENST00000554872 TBC1D22BQ9NU19 505 aa18.25■□□□□ 0.51
CCDC88C-209ENST00000554872 TPCN1Q9ULQ1 816 aa18.25■□□□□ 0.51
CCDC88C-209ENST00000554872 PCDHA4Q9UN74 947 aa18.25■□□□□ 0.51
CCDC88C-209ENST00000554872 GBF1Q92538 1859 aa18.24■□□□□ 0.51
CCDC88C-209ENST00000554872 RRN3P2A6NIE6 340 aa18.24■□□□□ 0.51
CCDC88C-209ENST00000554872 ZBBXA8MT70 800 aa18.24■□□□□ 0.51
CCDC88C-209ENST00000554872 RSPH10B2B2RC85 870 aa18.24■□□□□ 0.51
CCDC88C-209ENST00000554872 RSPH10BP0C881 870 aa18.24■□□□□ 0.51
CCDC88C-209ENST00000554872 THPOP40225 353 aa18.24■□□□□ 0.51
CCDC88C-209ENST00000554872 PPFIA1Q13136 1202 aa18.24■□□□□ 0.51
CCDC88C-209ENST00000554872 NPY5RQ15761 445 aa18.24■□□□□ 0.51
CCDC88C-209ENST00000554872 GLG1Q92896 1179 aa18.24■□□□□ 0.51
CCDC88C-209ENST00000554872 LENG9Q96B70 501 aa18.24■□□□□ 0.51
CCDC88C-209ENST00000554872 FAM161BQ96MY7 647 aa18.24■□□□□ 0.51
CCDC88C-209ENST00000554872 SLKQ9H2G2 1235 aaPredicted RBP18.24■□□□□ 0.51
CCDC88C-209ENST00000554872 PKD2L1Q9P0L9 805 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms