RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 FGFBP2Q9BYJ0 223 aa10.45□□□□□ -0.74
SYNE2-213ENST00000554805 EDEM3Q9BZQ6 932 aa10.45□□□□□ -0.74
SYNE2-213ENST00000554805 MTMR4Q9NYA4 1195 aa10.45□□□□□ -0.74
SYNE2-213ENST00000554805 MYH14Q7Z406 1995 aaKnown RBP10.45□□□□□ -0.74
SYNE2-213ENST00000554805 PNMA6FA0A0J9YX94 578 aa10.44□□□□□ -0.74
SYNE2-213ENST00000554805 MEIS1O00470 390 aa10.44□□□□□ -0.74
SYNE2-213ENST00000554805 PJA2O43164 708 aa10.44□□□□□ -0.74
SYNE2-213ENST00000554805 NR2F2P24468 414 aa10.44□□□□□ -0.74
SYNE2-213ENST00000554805 INPP5BP32019 993 aa10.44□□□□□ -0.74
SYNE2-213ENST00000554805 GTF2A1P52655 376 aaPredicted RBP10.44□□□□□ -0.74
SYNE2-213ENST00000554805 ITIH3Q06033 890 aa10.44□□□□□ -0.74
SYNE2-213ENST00000554805 KCTD19Q17RG1 926 aaPredicted RBP10.44□□□□□ -0.74
SYNE2-213ENST00000554805 ODF2Q5BJF6 829 aa10.44□□□□□ -0.74
SYNE2-213ENST00000554805 TTMPQ5BVD1 217 aa10.44□□□□□ -0.74
SYNE2-213ENST00000554805 NT5C3AQ9H0P0 336 aa10.44□□□□□ -0.74
SYNE2-213ENST00000554805 MYH10P35580 1976 aa10.44□□□□□ -0.74
SYNE2-213ENST00000554805 TLR2O60603 784 aa10.44□□□□□ -0.74
SYNE2-213ENST00000554805 GNA14O95837 355 aa10.44□□□□□ -0.74
SYNE2-213ENST00000554805 KCNH2Q12809 1159 aa10.44□□□□□ -0.74
SYNE2-213ENST00000554805 GLE1Q53GS7 698 aaKnown RBP10.44□□□□□ -0.74
SYNE2-213ENST00000554805 COBLL1Q53SF7 1204 aa10.44□□□□□ -0.74
SYNE2-213ENST00000554805 HGSNATQ68CP4 663 aa10.44□□□□□ -0.74
SYNE2-213ENST00000554805 AMIGO3Q86WK7 504 aa10.44□□□□□ -0.74
SYNE2-213ENST00000554805 RNF14Q9UBS8 474 aa10.44□□□□□ -0.74
SYNE2-213ENST00000554805 PABPC4Q13310 644 aaKnown RBP eCLIP10.43□□□□□ -0.74
SYNE2-213ENST00000554805 NAB2Q15742 525 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 VPS72Q15906 364 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 SLC18A3Q16572 532 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 CERS3Q8IU89 383 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 OTUD6BQ8N6M0 293 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 AP1M1Q9BXS5 423 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 JMJD4Q9H9V9 463 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 ROBO3Q96MS0 1386 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 ABCB11O95342 1321 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 CNTNAP4Q9C0A0 1308 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 hCG_1984214I3L0E3 225 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 LCA5LO95447 670 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 GUCY1A3Q02108 690 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 TRADDQ15628 312 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 TMEM119Q4V9L6 283 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 ZNF713Q8N859 430 aaPredicted RBP10.43□□□□□ -0.74
SYNE2-213ENST00000554805 CASKIN2Q8WXE0 1202 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 DNAJC19Q96DA6 116 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 CEP63Q96MT8 703 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 SEPT11Q9NVA2 429 aaKnown RBP10.43□□□□□ -0.74
SYNE2-213ENST00000554805 ARMCX3Q9UH62 379 aaPredicted RBP10.43□□□□□ -0.74
SYNE2-213ENST00000554805 HDAC9Q9UKV0 1011 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 DOT1LQ8TEK3 1739 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 KDM3AQ9Y4C1 1321 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 TTLL1O95922 423 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 ATP2B4P23634 1241 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 SMARCA1P28370 1054 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 SCNN1DP51172 638 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 PRPF4BQ13523 1007 aaKnown RBP10.43□□□□□ -0.74
SYNE2-213ENST00000554805 RUBCNQ92622 972 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 EFCC1Q9HA90 598 aa10.43□□□□□ -0.74
SYNE2-213ENST00000554805 TRPC5Q9UL62 973 aaPredicted RBP10.43□□□□□ -0.74
SYNE2-213ENST00000554805 POTEFA5A3E0 1075 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 RAD51CO43502 376 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 NOL4O94818 638 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 POTEIP0CG38 1075 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 SLC9A1P19634 815 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 PRR16Q569H4 304 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 POTEGQ6S5H5 508 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 POTEEQ6S8J3 1075 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 VPS36Q86VN1 386 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 HAS1Q92839 578 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 USP40Q9NVE5 1235 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 RHBDL3P58872 404 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 SNAP25P60880 206 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 ZNF543Q08ER8 600 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 SEPT2Q15019 361 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 IFI16Q16666 785 aaKnown RBP10.42□□□□□ -0.74
SYNE2-213ENST00000554805 ASTE1Q2TB18 679 aaPredicted RBP10.42□□□□□ -0.74
SYNE2-213ENST00000554805 SAMD1Q6SPF0 538 aaPredicted RBP10.42□□□□□ -0.74
SYNE2-213ENST00000554805 CAVIN3Q969G5 261 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 PLAAQ9Y263 795 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 PCDHA1Q9Y5I3 950 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 SHOX2O60902 331 aaPredicted RBP10.42□□□□□ -0.74
SYNE2-213ENST00000554805 SLURP2P0DP57 97 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 NR1D1P20393 614 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 ZNF76P36508 570 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 CYP4A11Q02928 519 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 EXOC3L4Q17RC7 722 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 B4GALNT4Q76KP1 1039 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 PEX26Q7Z412 305 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 DDX42Q86XP3 938 aaKnown RBP eCLIP10.42□□□□□ -0.74
SYNE2-213ENST00000554805 TRIM59Q8IWR1 403 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 U2AF1L4Q8WU68 220 aaKnown RBP10.42□□□□□ -0.74
SYNE2-213ENST00000554805 SCFD1Q8WVM8 642 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 UBLCP1Q8WVY7 318 aaPredicted RBP10.42□□□□□ -0.74
SYNE2-213ENST00000554805 RNPC3Q96LT9 517 aaKnown RBP10.42□□□□□ -0.74
SYNE2-213ENST00000554805 TRIM31Q9BZY9 425 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 PPANQ9NQ55 473 aaKnown RBP10.42□□□□□ -0.74
SYNE2-213ENST00000554805 PPP1R1BQ9UD71 204 aaPredicted RBP10.42□□□□□ -0.74
SYNE2-213ENST00000554805 DAGLAQ9Y4D2 1042 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 PCDHB13Q9Y5F0 798 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 A0A1B0GUL6 1792 aa10.42□□□□□ -0.74
SYNE2-213ENST00000554805 PCNTO95613 3336 aa10.41□□□□□ -0.74
SYNE2-213ENST00000554805 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms