RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 KCTD13Q8WZ19 329 aa3.2□□□□□ -1.9
LIMA1-209ENST00000552008 ADOQ96SZ5 270 aa3.2□□□□□ -1.9
LIMA1-209ENST00000552008 MEGF9Q9H1U4 602 aa3.2□□□□□ -1.9
LIMA1-209ENST00000552008 CGGBP1Q9UFW8 167 aaPredicted RBP3.2□□□□□ -1.9
LIMA1-209ENST00000552008 WDR3Q9UNX4 943 aaKnown RBP eCLIP3.2□□□□□ -1.9
LIMA1-209ENST00000552008 EMC9Q9Y3B6 208 aa3.2□□□□□ -1.9
LIMA1-209ENST00000552008 CADPSQ9ULU8 1353 aa3.2□□□□□ -1.9
LIMA1-209ENST00000552008 H0Y8X5 98 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 ENPP3O14638 875 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 SHOXO15266 292 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 CPP00450 1065 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 ZNF28P17035 718 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 HOXC12P31275 282 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 ECI1P42126 302 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 SEPHS1P49903 392 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 ITGA1P56199 1179 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 GRB10Q13322 594 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 GTF2IRD2BQ6EKJ0 949 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 C16orf86Q6ZW13 317 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 MRGPRGQ86SM5 289 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 GTF2IRD2Q86UP8 949 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 TRIM59Q8IWR1 403 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 SYNPOQ8N3V7 929 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 LZTR1Q8N653 840 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 BTN2A2Q8WVV5 523 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 CCDC140Q96MF4 163 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 PTCHD1Q96NR3 888 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 IER2Q9BTL4 223 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 DHRS4Q9BTZ2 278 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 LGR4Q9BXB1 951 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 TMEM168Q9H0V1 697 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 TMEM260Q9NX78 707 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 FBLN5Q9UBX5 448 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 DMRT1Q9Y5R6 373 aa3.19□□□□□ -1.9
LIMA1-209ENST00000552008 C2orf71A6NGG8 1288 aa3.18□□□□□ -1.9
LIMA1-209ENST00000552008 STXBP3O00186 592 aa3.18□□□□□ -1.9
LIMA1-209ENST00000552008 B4GALT4O60513 344 aa3.18□□□□□ -1.9
LIMA1-209ENST00000552008 TBC1D8O95759 1140 aa3.18□□□□□ -1.9
LIMA1-209ENST00000552008 ERBB2P04626 1255 aa3.18□□□□□ -1.9
LIMA1-209ENST00000552008 ADH4P08319 380 aa3.18□□□□□ -1.9
LIMA1-209ENST00000552008 PABPC1P11940 636 aaKnown RBP3.18□□□□□ -1.9
LIMA1-209ENST00000552008 ITGB6P18564 788 aa3.18□□□□□ -1.9
LIMA1-209ENST00000552008 IBSPP21815 317 aaPredicted RBP3.18□□□□□ -1.9
LIMA1-209ENST00000552008 FBLP22087 321 aaKnown RBP3.18□□□□□ -1.9
LIMA1-209ENST00000552008 SUMO1P63165 101 aaKnown RBP3.18□□□□□ -1.9
LIMA1-209ENST00000552008 SCRN1Q12765 414 aa3.18□□□□□ -1.9
LIMA1-209ENST00000552008 FAM209AQ5JX71 171 aa3.18□□□□□ -1.9
LIMA1-209ENST00000552008 EGFLAMQ63HQ2 1017 aa3.18□□□□□ -1.9
LIMA1-209ENST00000552008 CD300LDQ6UXZ3 194 aa3.18□□□□□ -1.9
LIMA1-209ENST00000552008 ETV3LQ6ZN32 361 aa3.18□□□□□ -1.9
LIMA1-209ENST00000552008 USP53Q70EK8 1073 aa3.18□□□□□ -1.9
LIMA1-209ENST00000552008 FAM26EQ8N5C1 309 aa3.18□□□□□ -1.9
LIMA1-209ENST00000552008 EXTL1Q92935 676 aa3.18□□□□□ -1.9
LIMA1-209ENST00000552008 YTHDC1Q96MU7 727 aaKnown RBP3.18□□□□□ -1.9
LIMA1-209ENST00000552008 FEZ1Q99689 392 aa3.18□□□□□ -1.9
LIMA1-209ENST00000552008 KANSL2Q9H9L4 492 aa3.18□□□□□ -1.9
LIMA1-209ENST00000552008 L2HGDHQ9H9P8 463 aa3.18□□□□□ -1.9
LIMA1-209ENST00000552008 CYP26B1Q9NR63 512 aa3.18□□□□□ -1.9
LIMA1-209ENST00000552008 RWDD3Q9Y3V2 267 aa3.18□□□□□ -1.9
LIMA1-209ENST00000552008 BACE2Q9Y5Z0 518 aa3.18□□□□□ -1.9
LIMA1-209ENST00000552008 SBNO2Q9Y2G9 1366 aa3.17□□□□□ -1.9
LIMA1-209ENST00000552008 TRBV23OR9-2A0A075B6M9 112 aa3.17□□□□□ -1.9
LIMA1-209ENST00000552008 MEFVO15553 781 aaPredicted RBP3.17□□□□□ -1.9
LIMA1-209ENST00000552008 ADCY3O60266 1144 aa3.17□□□□□ -1.9
LIMA1-209ENST00000552008 FGFR1P11362 822 aa3.17□□□□□ -1.9
LIMA1-209ENST00000552008 PAMP19021 973 aa3.17□□□□□ -1.9
LIMA1-209ENST00000552008 GRIA2P42262 883 aa3.17□□□□□ -1.9
LIMA1-209ENST00000552008 SQSTM1Q13501 440 aa3.17□□□□□ -1.9
LIMA1-209ENST00000552008 YOD1Q5VVQ6 348 aaPredicted RBP3.17□□□□□ -1.9
LIMA1-209ENST00000552008 PCSK4Q6UW60 755 aa3.17□□□□□ -1.9
LIMA1-209ENST00000552008 CHAMP1Q96JM3 812 aa3.17□□□□□ -1.9
LIMA1-209ENST00000552008 MRGPRX3Q96LB0 322 aa3.17□□□□□ -1.9
LIMA1-209ENST00000552008 NKX2-4Q9H2Z4 354 aa3.17□□□□□ -1.9
LIMA1-209ENST00000552008 ARHGEF4Q9NR80 690 aa3.17□□□□□ -1.9
LIMA1-209ENST00000552008 NDOR1Q9UHB4 597 aa3.17□□□□□ -1.9
LIMA1-209ENST00000552008 SFMBT1Q9UHJ3 866 aa3.17□□□□□ -1.9
LIMA1-209ENST00000552008 MRPS23Q9Y3D9 190 aaKnown RBP3.17□□□□□ -1.9
LIMA1-209ENST00000552008 CD2APQ9Y5K6 639 aa3.17□□□□□ -1.9
LIMA1-209ENST00000552008 PLD2O14939 933 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 AURKAO14965 403 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 TBX1O43435 398 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 FOXS1O43638 330 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 MYO1BO43795 1136 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 EFCAB14O75071 495 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 HMGB1P09429 215 aaKnown RBP3.16□□□□□ -1.9
LIMA1-209ENST00000552008 IFNGR1P15260 489 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 CNGA1P29973 690 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 GYS2P54840 703 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 GFRA1P56159 465 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 GABREP78334 506 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 MRPS21P82921 87 aaKnown RBP3.16□□□□□ -1.9
LIMA1-209ENST00000552008 MAP4K2Q12851 820 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 SF1Q15637 639 aaKnown RBP3.16□□□□□ -1.9
LIMA1-209ENST00000552008 C21orf62-AS1Q17RA5 79 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 PRSS53Q2L4Q9 553 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 PLEKHG4Q58EX7 1191 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 CT47A1Q5JQC4 288 aaPredicted RBP3.16□□□□□ -1.9
LIMA1-209ENST00000552008 FOXB2Q5VYV0 432 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 EEF1DP3Q658K8 133 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 WWC2Q6AWC2 1192 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms