RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 FKBP15Q5T1M5 1219 aa12.28□□□□□ -0.44
CUX1-212ENST00000547394 CCDC65Q8IXS2 484 aa12.28□□□□□ -0.44
CUX1-212ENST00000547394 ZBED3Q96IU2 234 aaPredicted RBP12.28□□□□□ -0.44
CUX1-212ENST00000547394 TTYH3Q9C0H2 523 aa12.28□□□□□ -0.44
CUX1-212ENST00000547394 LACRTQ9GZZ8 138 aa12.28□□□□□ -0.44
CUX1-212ENST00000547394 GLT8D2Q9H1C3 349 aa12.28□□□□□ -0.44
CUX1-212ENST00000547394 CAPN11Q9UMQ6 739 aa12.28□□□□□ -0.44
CUX1-212ENST00000547394 ZNF536O15090 1300 aa12.28□□□□□ -0.44
CUX1-212ENST00000547394 GAS7O60861 476 aa12.28□□□□□ -0.44
CUX1-212ENST00000547394 FOSP01100 380 aaPredicted RBP12.28□□□□□ -0.44
CUX1-212ENST00000547394 NMT1P30419 496 aaKnown RBP12.28□□□□□ -0.44
CUX1-212ENST00000547394 HOXD13P35453 343 aa12.28□□□□□ -0.44
CUX1-212ENST00000547394 HAUS3Q68CZ6 603 aa12.28□□□□□ -0.44
CUX1-212ENST00000547394 RRAGAQ7L523 313 aa12.28□□□□□ -0.44
CUX1-212ENST00000547394 DNAAF5Q86Y56 855 aa12.28□□□□□ -0.44
CUX1-212ENST00000547394 ANKRD13CQ8N6S4 541 aa12.28□□□□□ -0.44
CUX1-212ENST00000547394 ZNF577Q9BSK1 485 aa12.28□□□□□ -0.44
CUX1-212ENST00000547394 MACROD2A1Z1Q3 448 aa12.28□□□□□ -0.44
CUX1-212ENST00000547394 KIF5CO60282 957 aa12.28□□□□□ -0.44
CUX1-212ENST00000547394 ITGB5P18084 799 aa12.28□□□□□ -0.44
CUX1-212ENST00000547394 RPA1P27694 616 aa12.28□□□□□ -0.44
CUX1-212ENST00000547394 TSR1Q2NL82 804 aaKnown RBP12.28□□□□□ -0.44
CUX1-212ENST00000547394 KIF4BQ2VIQ3 1234 aa12.28□□□□□ -0.44
CUX1-212ENST00000547394 OTOP1Q7RTM1 612 aa12.28□□□□□ -0.44
CUX1-212ENST00000547394 FAM83AQ86UY5 434 aa12.28□□□□□ -0.44
CUX1-212ENST00000547394 DRC1Q96MC2 740 aa12.28□□□□□ -0.44
CUX1-212ENST00000547394 DNAJC7Q99615 494 aa12.28□□□□□ -0.44
CUX1-212ENST00000547394 UNC45AQ9H3U1 944 aa12.28□□□□□ -0.44
CUX1-212ENST00000547394 NHEJ1Q9H9Q4 299 aaPredicted RBP12.28□□□□□ -0.44
CUX1-212ENST00000547394 RNF216Q9NWF9 866 aaPredicted RBP12.28□□□□□ -0.44
CUX1-212ENST00000547394 SRGAP2O75044 1071 aa12.27□□□□□ -0.45
CUX1-212ENST00000547394 SLITRK3O94933 977 aa12.27□□□□□ -0.45
CUX1-212ENST00000547394 GCNT3O95395 438 aa12.27□□□□□ -0.45
CUX1-212ENST00000547394 MYCLP12524 364 aaPredicted RBP12.27□□□□□ -0.45
CUX1-212ENST00000547394 MMP14P50281 582 aa12.27□□□□□ -0.45
CUX1-212ENST00000547394 ADAM9Q13443 819 aa12.27□□□□□ -0.45
CUX1-212ENST00000547394 COG2Q14746 738 aa12.27□□□□□ -0.45
CUX1-212ENST00000547394 ZCWPW2Q504Y3 356 aa12.27□□□□□ -0.45
CUX1-212ENST00000547394 CEP55Q53EZ4 464 aa12.27□□□□□ -0.45
CUX1-212ENST00000547394 HYIQ5T013 277 aa12.27□□□□□ -0.45
CUX1-212ENST00000547394 ANGEL2Q5VTE6 544 aaKnown RBP12.27□□□□□ -0.45
CUX1-212ENST00000547394 NSMFQ6X4W1 530 aa12.27□□□□□ -0.45
CUX1-212ENST00000547394 FAM114A1Q8IWE2 563 aa12.27□□□□□ -0.45
CUX1-212ENST00000547394 TRPM4Q8TD43 1214 aa12.27□□□□□ -0.45
CUX1-212ENST00000547394 NOC3LQ8WTT2 800 aaKnown RBP12.27□□□□□ -0.45
CUX1-212ENST00000547394 MAP7D2Q96T17 732 aa12.27□□□□□ -0.45
CUX1-212ENST00000547394 TSG101Q99816 390 aa12.27□□□□□ -0.45
CUX1-212ENST00000547394 NAA15Q9BXJ9 866 aaKnown RBP12.27□□□□□ -0.45
CUX1-212ENST00000547394 RABGAP1Q9Y3P9 1069 aa12.27□□□□□ -0.45
CUX1-212ENST00000547394 A0A1W2PQC6 194 aa12.27□□□□□ -0.45
CUX1-212ENST00000547394 LRRC53A6NM62 1247 aa12.27□□□□□ -0.45
CUX1-212ENST00000547394 ACTN1P12814 892 aa12.27□□□□□ -0.45
CUX1-212ENST00000547394 CASP4P49662 377 aa12.27□□□□□ -0.45
CUX1-212ENST00000547394 SP4Q02446 784 aa12.27□□□□□ -0.45
CUX1-212ENST00000547394 PPP2R3AQ06190 1150 aa12.27□□□□□ -0.45
CUX1-212ENST00000547394 ERMNQ8TAM6 284 aa12.27□□□□□ -0.45
CUX1-212ENST00000547394 SIK3Q9Y2K2 1263 aa12.27□□□□□ -0.45
CUX1-212ENST00000547394 RIPK3Q9Y572 518 aa12.27□□□□□ -0.45
CUX1-212ENST00000547394 ZNF263O14978 683 aa12.26□□□□□ -0.45
CUX1-212ENST00000547394 VCAM1P19320 739 aa12.26□□□□□ -0.45
CUX1-212ENST00000547394 NR2F2P24468 414 aa12.26□□□□□ -0.45
CUX1-212ENST00000547394 KCNMA1Q12791 1236 aa12.26□□□□□ -0.45
CUX1-212ENST00000547394 SLC16A10Q8TF71 515 aa12.26□□□□□ -0.45
CUX1-212ENST00000547394 CCDC51Q96ER9 411 aa12.26□□□□□ -0.45
CUX1-212ENST00000547394 HINFPQ9BQA5 517 aa12.26□□□□□ -0.45
CUX1-212ENST00000547394 MRPL11Q9Y3B7 192 aaKnown RBP12.26□□□□□ -0.45
CUX1-212ENST00000547394 TELO2Q9Y4R8 837 aa12.26□□□□□ -0.45
CUX1-212ENST00000547394 SAMM50Q9Y512 469 aa12.26□□□□□ -0.45
CUX1-212ENST00000547394 COL4A3BPQ9Y5P4 624 aa12.26□□□□□ -0.45
CUX1-212ENST00000547394 PSMD10O75832 226 aa12.26□□□□□ -0.45
CUX1-212ENST00000547394 SEC31AO94979 1220 aaKnown RBP12.26□□□□□ -0.45
CUX1-212ENST00000547394 CIITAP33076 1130 aa12.26□□□□□ -0.45
CUX1-212ENST00000547394 FKBP3Q00688 224 aaKnown RBP12.26□□□□□ -0.45
CUX1-212ENST00000547394 MAN2A1Q16706 1144 aa12.26□□□□□ -0.45
CUX1-212ENST00000547394 DCAF17Q5H9S7 520 aaPredicted RBP12.26□□□□□ -0.45
CUX1-212ENST00000547394 CCDC122Q5T0U0 273 aa12.26□□□□□ -0.45
CUX1-212ENST00000547394 KIAA1328Q86T90 577 aa12.26□□□□□ -0.45
CUX1-212ENST00000547394 SYT2Q8N9I0 419 aaPredicted RBP12.26□□□□□ -0.45
CUX1-212ENST00000547394 UBXN4Q92575 508 aa12.26□□□□□ -0.45
CUX1-212ENST00000547394 ATG4CQ96DT6 458 aa12.26□□□□□ -0.45
CUX1-212ENST00000547394 FAM20AQ96MK3 541 aa12.26□□□□□ -0.45
CUX1-212ENST00000547394 TAAR1Q96RJ0 339 aa12.26□□□□□ -0.45
CUX1-212ENST00000547394 WRNIP1Q96S55 665 aa12.26□□□□□ -0.45
CUX1-212ENST00000547394 KCTD10Q9H3F6 313 aa12.26□□□□□ -0.45
CUX1-212ENST00000547394 RPAP3Q9H6T3 665 aaPredicted RBP12.26□□□□□ -0.45
CUX1-212ENST00000547394 MRFAP1Q9Y605 127 aa12.26□□□□□ -0.45
CUX1-212ENST00000547394 PIK3CDO00329 1044 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 IPO5O00410 1097 aaKnown RBP12.25□□□□□ -0.45
CUX1-212ENST00000547394 PTGER2P43116 358 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 HMGCS2P54868 508 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 TGFB2P61812 414 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 MAP3K9P80192 1104 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 LRRC63Q05C16 580 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 TRIM14Q14142 442 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 TNIP1Q15025 636 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 TCERG1LQ5VWI1 586 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 RINT1Q6NUQ1 792 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 MYCT1Q8N699 235 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 PSMB7Q99436 277 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 NAP1L4Q99733 375 aaKnown RBP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms