RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 SNX29Q8TEQ0 813 aa17.98■□□□□ 0.47
PRPF40A-212ENST00000545856 SYAP1Q96A49 352 aaPredicted RBP17.98■□□□□ 0.47
PRPF40A-212ENST00000545856 CDK5RAP3Q96JB5 506 aa17.98■□□□□ 0.47
PRPF40A-212ENST00000545856 UNC45AQ9H3U1 944 aa17.98■□□□□ 0.47
PRPF40A-212ENST00000545856 MLXIPQ9HAP2 919 aa17.98■□□□□ 0.47
PRPF40A-212ENST00000545856 DISC1Q9NRI5 854 aa17.98■□□□□ 0.47
PRPF40A-212ENST00000545856 KCNH3Q9ULD8 1083 aa17.98■□□□□ 0.47
PRPF40A-212ENST00000545856 TRIM17Q9Y577 477 aa17.98■□□□□ 0.47
PRPF40A-212ENST00000545856 SEPT4O43236 478 aa17.97■□□□□ 0.47
PRPF40A-212ENST00000545856 P4HBP07237 508 aaKnown RBP17.97■□□□□ 0.47
PRPF40A-212ENST00000545856 PFKFB1P16118 471 aa17.97■□□□□ 0.47
PRPF40A-212ENST00000545856 SYKP43405 635 aa17.97■□□□□ 0.47
PRPF40A-212ENST00000545856 SLC26A2P50443 739 aa17.97■□□□□ 0.47
PRPF40A-212ENST00000545856 TNFAIP2Q03169 654 aa17.97■□□□□ 0.47
PRPF40A-212ENST00000545856 GRIN1Q05586 938 aa17.97■□□□□ 0.47
PRPF40A-212ENST00000545856 CCDC144BQ3MJ40 725 aa17.97■□□□□ 0.47
PRPF40A-212ENST00000545856 NCAPH2Q6IBW4 605 aa17.97■□□□□ 0.47
PRPF40A-212ENST00000545856 EEPD1Q7L9B9 569 aa17.97■□□□□ 0.47
PRPF40A-212ENST00000545856 PPTC7Q8NI37 304 aa17.97■□□□□ 0.47
PRPF40A-212ENST00000545856 ATP6V0A1Q93050 837 aa17.97■□□□□ 0.47
PRPF40A-212ENST00000545856 HSD17B14Q9BPX1 270 aa17.97■□□□□ 0.47
PRPF40A-212ENST00000545856 HOOK1Q9UJC3 728 aaKnown RBP17.97■□□□□ 0.47
PRPF40A-212ENST00000545856 EMSYQ7Z589 1322 aa17.96■□□□□ 0.47
PRPF40A-212ENST00000545856 KINO60870 393 aaKnown RBP17.96■□□□□ 0.47
PRPF40A-212ENST00000545856 GADD45BO75293 160 aaPredicted RBP17.96■□□□□ 0.47
PRPF40A-212ENST00000545856 DUSP11O75319 330 aaKnown RBP17.96■□□□□ 0.47
PRPF40A-212ENST00000545856 MYL1P05976 194 aa17.96■□□□□ 0.47
PRPF40A-212ENST00000545856 HSPA8P11142 646 aaKnown RBP17.96■□□□□ 0.47
PRPF40A-212ENST00000545856 XRCC6P12956 609 aaKnown RBP eCLIP17.96■□□□□ 0.476e-6■■■■■ 31.4
PRPF40A-212ENST00000545856 HOXD8P13378 290 aaPredicted RBP17.96■□□□□ 0.47
PRPF40A-212ENST00000545856 CAPN2P17655 700 aa17.96■□□□□ 0.47
PRPF40A-212ENST00000545856 GRK4P32298 578 aa17.96■□□□□ 0.47
PRPF40A-212ENST00000545856 CYP2C19P33261 490 aa17.96■□□□□ 0.47
PRPF40A-212ENST00000545856 NKX3-2P78367 333 aa17.96■□□□□ 0.47
PRPF40A-212ENST00000545856 SP2Q02086 613 aa17.96■□□□□ 0.47
PRPF40A-212ENST00000545856 CYFIP1Q7L576 1253 aa17.96■□□□□ 0.47
PRPF40A-212ENST00000545856 ENGASEQ8NFI3 743 aa17.96■□□□□ 0.47
PRPF40A-212ENST00000545856 RASSF8Q8NHQ8 419 aa17.96■□□□□ 0.47
PRPF40A-212ENST00000545856 SEPT1Q8WYJ6 367 aa17.96■□□□□ 0.47
PRPF40A-212ENST00000545856 LRRC27Q9C0I9 530 aa17.96■□□□□ 0.47
PRPF40A-212ENST00000545856 PPME1Q9Y570 386 aa17.96■□□□□ 0.47
PRPF40A-212ENST00000545856 DDX49Q9Y6V7 483 aaKnown RBP17.96■□□□□ 0.47
PRPF40A-212ENST00000545856 IGKV6D-21A0A0A0MT36 114 aa17.95■□□□□ 0.46
PRPF40A-212ENST00000545856 NOP56O00567 594 aaKnown RBP17.95■□□□□ 0.46
PRPF40A-212ENST00000545856 ARIH2O95376 493 aa17.95■□□□□ 0.46
PRPF40A-212ENST00000545856 ADCYAP1R1P41586 468 aa17.95■□□□□ 0.46
PRPF40A-212ENST00000545856 QARSP47897 775 aaKnown RBP17.95■□□□□ 0.46
PRPF40A-212ENST00000545856 ACTR2P61160 394 aa17.95■□□□□ 0.46
PRPF40A-212ENST00000545856 CAP1Q01518 475 aa17.95■□□□□ 0.46
PRPF40A-212ENST00000545856 ARHGAP1Q07960 439 aa17.95■□□□□ 0.46
PRPF40A-212ENST00000545856 TMEM119Q4V9L6 283 aa17.95■□□□□ 0.46
PRPF40A-212ENST00000545856 FAM160B1Q5W0V3 765 aa17.95■□□□□ 0.46
PRPF40A-212ENST00000545856 ABHD15Q6UXT9 468 aa17.95■□□□□ 0.46
PRPF40A-212ENST00000545856 CTU1Q7Z7A3 348 aaKnown RBP17.95■□□□□ 0.46
PRPF40A-212ENST00000545856 FMR1NBQ8N0W7 255 aaPredicted RBP17.95■□□□□ 0.46
PRPF40A-212ENST00000545856 AFAP1L1Q8TED9 768 aa17.95■□□□□ 0.46
PRPF40A-212ENST00000545856 EPSTI1Q96J88 318 aa17.95■□□□□ 0.46
PRPF40A-212ENST00000545856 ZFP91Q96JP5 570 aaPredicted RBP17.95■□□□□ 0.46
PRPF40A-212ENST00000545856 EIF2AK1Q9BQI3 630 aaKnown RBP17.95■□□□□ 0.46
PRPF40A-212ENST00000545856 ZSWIM4Q9H7M6 989 aa17.95■□□□□ 0.46
PRPF40A-212ENST00000545856 GNEQ9Y223 722 aaKnown RBP17.95■□□□□ 0.46
PRPF40A-212ENST00000545856 PTPN22Q9Y2R2 807 aa17.95■□□□□ 0.46
PRPF40A-212ENST00000545856 FRMPD3Q5JV73 1810 aa17.95■□□□□ 0.46
PRPF40A-212ENST00000545856 IGSF9BQ9UPX0 1349 aa17.94■□□□□ 0.46
PRPF40A-212ENST00000545856 CTAGE5O15320 804 aa17.94■□□□□ 0.46
PRPF40A-212ENST00000545856 PPFIA4O75335 1185 aa17.94■□□□□ 0.46
PRPF40A-212ENST00000545856 CCNE2O96020 404 aa17.94■□□□□ 0.46
PRPF40A-212ENST00000545856 SUPT20HL2P0C7V6 817 aa17.94■□□□□ 0.46
PRPF40A-212ENST00000545856 PRKAR2AP13861 404 aaKnown RBP17.94■□□□□ 0.46
PRPF40A-212ENST00000545856 SMPD1P17405 629 aa17.94■□□□□ 0.46
PRPF40A-212ENST00000545856 CCT6AP40227 531 aaKnown RBP17.94■□□□□ 0.46
PRPF40A-212ENST00000545856 CPT1AP50416 773 aa17.94■□□□□ 0.46
PRPF40A-212ENST00000545856 NDUFA8P51970 172 aa17.94■□□□□ 0.46
PRPF40A-212ENST00000545856 PSMC5P62195 406 aa17.94■□□□□ 0.46
PRPF40A-212ENST00000545856 LY6KQ17RY6 165 aa17.94■□□□□ 0.46
PRPF40A-212ENST00000545856 RRAGBQ5VZM2 374 aa17.94■□□□□ 0.46
PRPF40A-212ENST00000545856 C4orf19Q8IY42 314 aa17.94■□□□□ 0.46
PRPF40A-212ENST00000545856 MMTAG2Q9BU76 263 aaKnown RBP17.94■□□□□ 0.46
PRPF40A-212ENST00000545856 SPC25Q9HBM1 224 aa17.94■□□□□ 0.46
PRPF40A-212ENST00000545856 PDGFCQ9NRA1 345 aa17.94■□□□□ 0.46
PRPF40A-212ENST00000545856 SAMM50Q9Y512 469 aa17.94■□□□□ 0.46
PRPF40A-212ENST00000545856 ARID2Q68CP9 1835 aa17.94■□□□□ 0.46
PRPF40A-212ENST00000545856 A0A1B0GVL5 298 aa17.93■□□□□ 0.46
PRPF40A-212ENST00000545856 A6NJR5 290 aa17.93■□□□□ 0.46
PRPF40A-212ENST00000545856 CHMP2AO43633 222 aa17.93■□□□□ 0.46
PRPF40A-212ENST00000545856 KPNA6O60684 536 aa17.93■□□□□ 0.46
PRPF40A-212ENST00000545856 LGR5O75473 907 aa17.93■□□□□ 0.46
PRPF40A-212ENST00000545856 SLFN14P0C7P3 912 aa17.93■□□□□ 0.46
PRPF40A-212ENST00000545856 CACNB2Q08289 660 aaPredicted RBP17.93■□□□□ 0.46
PRPF40A-212ENST00000545856 SNW1Q13573 536 aaKnown RBP17.93■□□□□ 0.46
PRPF40A-212ENST00000545856 PLPPR4Q7Z2D5 763 aa17.93■□□□□ 0.46
PRPF40A-212ENST00000545856 CEP57L1Q8IYX8 460 aa17.93■□□□□ 0.46
PRPF40A-212ENST00000545856 FAM167AQ96KS9 214 aa17.93■□□□□ 0.46
PRPF40A-212ENST00000545856 SPATA33Q96N06 139 aa17.93■□□□□ 0.46
PRPF40A-212ENST00000545856 NACC1Q96RE7 527 aa17.93■□□□□ 0.46
PRPF40A-212ENST00000545856 GPR20Q99678 358 aa17.93■□□□□ 0.46
PRPF40A-212ENST00000545856 ANP32EQ9BTT0 268 aa17.93■□□□□ 0.46
PRPF40A-212ENST00000545856 AP5M1Q9H0R1 490 aa17.93■□□□□ 0.46
PRPF40A-212ENST00000545856 TNMDQ9H2S6 317 aa17.93■□□□□ 0.46
PRPF40A-212ENST00000545856 AZI2Q9H6S1 392 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms