RNA–Protein interactions for RNA: ENST00000542570.5

TOP3A-208, Transcript of DNA topoisomerase III alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOP3A, Length 4,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-208ENST00000542570 ZMYND10O75800 440 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 NEFHP12036 1026 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 GCLMP48507 274 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 MAP3K9P80192 1104 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 TFAMQ00059 246 aaKnown RBP11.13□□□□□ -0.63
TOP3A-208ENST00000542570 STXBP2Q15833 593 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 KIAA0753Q2KHM9 967 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 ZNF713Q8N859 430 aaPredicted RBP11.13□□□□□ -0.63
TOP3A-208ENST00000542570 DHTKD1Q96HY7 919 aaPredicted RBP11.13□□□□□ -0.63
TOP3A-208ENST00000542570 PRIMPOLQ96LW4 560 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 TFR2Q9UP52 801 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 ACTN4O43707 911 aaKnown RBP11.13□□□□□ -0.63
TOP3A-208ENST00000542570 SPOPO43791 374 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 CD44P16070 742 aaKnown RBP11.13□□□□□ -0.63
TOP3A-208ENST00000542570 PRELPP51888 382 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 SOX10P56693 466 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 PSMC6P62333 389 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 PPP1R18Q6NYC8 613 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 TMEM143Q96AN5 459 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 ELMO3Q96BJ8 720 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 FAM163AQ96GL9 167 aaPredicted RBP11.13□□□□□ -0.63
TOP3A-208ENST00000542570 RWDD2AQ9UIY3 292 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 CEP104O60308 925 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 CELF2O95319 508 aaKnown RBP11.13□□□□□ -0.63
TOP3A-208ENST00000542570 CD58P19256 250 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 VCAM1P19320 739 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 STAT1P42224 750 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 HUNKP57058 714 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 TMEM62Q0P6H9 643 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 VSTM4Q8IW00 320 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 TEX13BQ9BXU2 312 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 ACBD3Q9H3P7 528 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 GPRC5CQ9NQ84 441 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 EXOC7Q9UPT5 735 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 KCPQ6ZWJ8 1503 aa11.13□□□□□ -0.63
TOP3A-208ENST00000542570 CSDE1O75534 798 aaKnown RBP11.12□□□□□ -0.63
TOP3A-208ENST00000542570 CCDC172P0C7W6 258 aa11.12□□□□□ -0.63
TOP3A-208ENST00000542570 HDLBPQ00341 1268 aaKnown RBP11.12□□□□□ -0.63
TOP3A-208ENST00000542570 UNC13DQ70J99 1090 aa11.12□□□□□ -0.63
TOP3A-208ENST00000542570 CCDC25Q86WR0 208 aa11.12□□□□□ -0.63
TOP3A-208ENST00000542570 ACAD9Q9H845 621 aa11.12□□□□□ -0.63
TOP3A-208ENST00000542570 KCNH7Q9NS40 1196 aa11.12□□□□□ -0.63
TOP3A-208ENST00000542570 NRBP2Q9NSY0 501 aa11.12□□□□□ -0.63
TOP3A-208ENST00000542570 K7ERI5 159 aa11.12□□□□□ -0.63
TOP3A-208ENST00000542570 DKC1O60832 514 aaKnown RBP eCLIP11.12□□□□□ -0.63
TOP3A-208ENST00000542570 PPP1R2P41236 205 aa11.12□□□□□ -0.63
TOP3A-208ENST00000542570 KLK7P49862 253 aa11.12□□□□□ -0.63
TOP3A-208ENST00000542570 CCNA1P78396 465 aa11.12□□□□□ -0.63
TOP3A-208ENST00000542570 PPP2R3AQ06190 1150 aa11.12□□□□□ -0.63
TOP3A-208ENST00000542570 SMC1AQ14683 1233 aaKnown RBP11.12□□□□□ -0.63
TOP3A-208ENST00000542570 SPDYE2Q495Y8 402 aa11.12□□□□□ -0.63
TOP3A-208ENST00000542570 BRDTQ58F21 947 aaPredicted RBP11.12□□□□□ -0.63
TOP3A-208ENST00000542570 GBP6Q6ZN66 633 aa11.12□□□□□ -0.63
TOP3A-208ENST00000542570 SALL1Q9NSC2 1324 aa11.12□□□□□ -0.63
TOP3A-208ENST00000542570 MSH4O15457 936 aa11.12□□□□□ -0.63
TOP3A-208ENST00000542570 IFRD2Q12894 506 aaPredicted RBP11.12□□□□□ -0.63
TOP3A-208ENST00000542570 SCARA5Q6ZMJ2 495 aa11.12□□□□□ -0.63
TOP3A-208ENST00000542570 TOGARAM2Q6ZUX3 1019 aa11.12□□□□□ -0.63
TOP3A-208ENST00000542570 CATSPER3Q86XQ3 398 aa11.12□□□□□ -0.63
TOP3A-208ENST00000542570 SECISBP2LQ93073 1101 aaKnown RBP11.12□□□□□ -0.63
TOP3A-208ENST00000542570 FAM107BQ9H098 131 aa11.12□□□□□ -0.63
TOP3A-208ENST00000542570 ONECUT3O60422 494 aaPredicted RBP11.11□□□□□ -0.63
TOP3A-208ENST00000542570 CYP2B6P20813 491 aa11.11□□□□□ -0.63
TOP3A-208ENST00000542570 QARSP47897 775 aaKnown RBP11.11□□□□□ -0.63
TOP3A-208ENST00000542570 MAP2K1Q02750 393 aaPredicted RBP11.11□□□□□ -0.63
TOP3A-208ENST00000542570 SF3A3Q12874 501 aaKnown RBP eCLIP11.11□□□□□ -0.632e-6■■■■□ 21.4
TOP3A-208ENST00000542570 IQCEQ6IPM2 695 aa11.11□□□□□ -0.63
TOP3A-208ENST00000542570 SLC35F6Q8N357 371 aa11.11□□□□□ -0.63
TOP3A-208ENST00000542570 REEP2Q9BRK0 252 aa11.11□□□□□ -0.63
TOP3A-208ENST00000542570 WDR46O15213 610 aaKnown RBP11.11□□□□□ -0.63
TOP3A-208ENST00000542570 CTNND1O60716 968 aaKnown RBP11.11□□□□□ -0.63
TOP3A-208ENST00000542570 MED24O75448 989 aa11.11□□□□□ -0.63
TOP3A-208ENST00000542570 ETF1P62495 437 aaKnown RBP11.11□□□□□ -0.63
TOP3A-208ENST00000542570 SEZ6Q53EL9 994 aa11.11□□□□□ -0.63
TOP3A-208ENST00000542570 PROCA1Q8NCQ7 364 aaPredicted RBP11.11□□□□□ -0.63
TOP3A-208ENST00000542570 PPP1R13BQ96KQ4 1090 aa11.11□□□□□ -0.63
TOP3A-208ENST00000542570 FAM20AQ96MK3 541 aa11.11□□□□□ -0.63
TOP3A-208ENST00000542570 CUEDC2Q9H467 287 aa11.11□□□□□ -0.63
TOP3A-208ENST00000542570 GCNT4Q9P109 453 aa11.11□□□□□ -0.63
TOP3A-208ENST00000542570 TMX2Q9Y320 296 aa11.11□□□□□ -0.63
TOP3A-208ENST00000542570 GAKO14976 1311 aa11.11□□□□□ -0.63
TOP3A-208ENST00000542570 TTC26A0AVF1 554 aa11.11□□□□□ -0.63
TOP3A-208ENST00000542570 ERLIN2O94905 339 aa11.11□□□□□ -0.63
TOP3A-208ENST00000542570 EIF4A3P38919 411 aaKnown RBP11.11□□□□□ -0.63
TOP3A-208ENST00000542570 USP11P51784 963 aa11.11□□□□□ -0.63
TOP3A-208ENST00000542570 SH3BP5LQ7L8J4 393 aa11.11□□□□□ -0.63
TOP3A-208ENST00000542570 MAATS1Q7Z4T9 603 aa11.11□□□□□ -0.63
TOP3A-208ENST00000542570 MRRFQ96E11 262 aaKnown RBP11.11□□□□□ -0.63
TOP3A-208ENST00000542570 NAPGQ99747 312 aaPredicted RBP11.11□□□□□ -0.63
TOP3A-208ENST00000542570 UBE2TQ9NPD8 197 aaPredicted RBP11.11□□□□□ -0.63
TOP3A-208ENST00000542570 TOPAZ1Q8N9V7 1692 aa11.11□□□□□ -0.63
TOP3A-208ENST00000542570 DENND3A2RUS2 1198 aa11.11□□□□□ -0.63
TOP3A-208ENST00000542570 GGPS1O95749 300 aa11.11□□□□□ -0.63
TOP3A-208ENST00000542570 VIL1P09327 827 aaKnown RBP11.11□□□□□ -0.63
TOP3A-208ENST00000542570 MYBP10242 640 aa11.11□□□□□ -0.63
TOP3A-208ENST00000542570 CYP2C8P10632 490 aa11.11□□□□□ -0.63
TOP3A-208ENST00000542570 EPHX2P34913 555 aa11.11□□□□□ -0.63
TOP3A-208ENST00000542570 CETN2P41208 172 aa11.11□□□□□ -0.63
TOP3A-208ENST00000542570 ZNF157P51786 506 aaPredicted RBP11.11□□□□□ -0.63
TOP3A-208ENST00000542570 EHHADHQ08426 723 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms