RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 MYCNP04198 464 aaPredicted RBP19.3■□□□□ 0.68
LIG1-204ENST00000542460 MMP3P08254 477 aa19.3■□□□□ 0.68
LIG1-204ENST00000542460 ACTR2P61160 394 aa19.3■□□□□ 0.68
LIG1-204ENST00000542460 IRX5P78411 483 aaPredicted RBP19.3■□□□□ 0.68
LIG1-204ENST00000542460 BEX3Q00994 111 aa19.3■□□□□ 0.68
LIG1-204ENST00000542460 PPP2R5CQ13362 524 aa19.3■□□□□ 0.68
LIG1-204ENST00000542460 SLC39A14Q15043 492 aa19.3■□□□□ 0.68
LIG1-204ENST00000542460 LRRC41Q15345 812 aa19.3■□□□□ 0.68
LIG1-204ENST00000542460 DGKDQ16760 1214 aa19.3■□□□□ 0.68
LIG1-204ENST00000542460 TMEM266Q2M3C6 531 aa19.3■□□□□ 0.68
LIG1-204ENST00000542460 B3GNT9Q6UX72 402 aa19.3■□□□□ 0.68
LIG1-204ENST00000542460 DTHD1Q6ZMT9 781 aa19.3■□□□□ 0.68
LIG1-204ENST00000542460 SMAP1Q8IYB5 467 aaPredicted RBP19.3■□□□□ 0.68
LIG1-204ENST00000542460 UNC45AQ9H3U1 944 aa19.3■□□□□ 0.68
LIG1-204ENST00000542460 VAV3Q9UKW4 847 aa19.3■□□□□ 0.68
LIG1-204ENST00000542460 MYADML2A6NDP7 307 aa19.3■□□□□ 0.68
LIG1-204ENST00000542460 ATG7O95352 703 aa19.3■□□□□ 0.68
LIG1-204ENST00000542460 SFNP31947 248 aa19.3■□□□□ 0.68
LIG1-204ENST00000542460 CCSAPQ6IQ19 270 aaPredicted RBP19.3■□□□□ 0.68
LIG1-204ENST00000542460 PCSK9Q8NBP7 692 aaKnown RBP19.3■□□□□ 0.68
LIG1-204ENST00000542460 LINC00301Q8NCQ3 95 aa19.3■□□□□ 0.68
LIG1-204ENST00000542460 TELO2Q9Y4R8 837 aa19.3■□□□□ 0.68
LIG1-204ENST00000542460 PCDHA10Q9Y5I2 948 aa19.3■□□□□ 0.68
LIG1-204ENST00000542460 MORC2Q9Y6X9 1032 aaPredicted RBP19.3■□□□□ 0.68
LIG1-204ENST00000542460 GSTTP1A0A1W2PQM5 241 aa19.29■□□□□ 0.68
LIG1-204ENST00000542460 WDR64B1ANS9 1081 aa19.29■□□□□ 0.68
LIG1-204ENST00000542460 CHMP2AO43633 222 aa19.29■□□□□ 0.68
LIG1-204ENST00000542460 KPNA6O60684 536 aa19.29■□□□□ 0.68
LIG1-204ENST00000542460 YEATS4O95619 227 aa19.29■□□□□ 0.68
LIG1-204ENST00000542460 HOXD8P13378 290 aaPredicted RBP19.29■□□□□ 0.68
LIG1-204ENST00000542460 TCF7P36402 384 aaPredicted RBP19.29■□□□□ 0.68
LIG1-204ENST00000542460 TECP42680 631 aa19.29■□□□□ 0.68
LIG1-204ENST00000542460 FXR2P51116 673 aaKnown RBP eCLIP19.29■□□□□ 0.681e-6■■■■□ 25.2
LIG1-204ENST00000542460 JAK3P52333 1124 aa19.29■□□□□ 0.68
LIG1-204ENST00000542460 KRT85P78386 507 aa19.29■□□□□ 0.68
LIG1-204ENST00000542460 SPIRE1Q08AE8 756 aa19.29■□□□□ 0.68
LIG1-204ENST00000542460 PDIA5Q14554 519 aa19.29■□□□□ 0.68
LIG1-204ENST00000542460 STK38Q15208 465 aa19.29■□□□□ 0.68
LIG1-204ENST00000542460 ABHD15Q6UXT9 468 aa19.29■□□□□ 0.68
LIG1-204ENST00000542460 RDM1Q8NG50 284 aa19.29■□□□□ 0.68
LIG1-204ENST00000542460 TSEN34Q9BSV6 310 aaKnown RBP19.29■□□□□ 0.68
LIG1-204ENST00000542460 RAB34Q9BZG1 259 aa19.29■□□□□ 0.68
LIG1-204ENST00000542460 DISC1Q9NRI5 854 aa19.29■□□□□ 0.68
LIG1-204ENST00000542460 SAMM50Q9Y512 469 aa19.29■□□□□ 0.68
LIG1-204ENST00000542460 KBTBD13C9JR72 458 aa19.28■□□□□ 0.68
LIG1-204ENST00000542460 DNM1LO00429 736 aa19.28■□□□□ 0.68
LIG1-204ENST00000542460 NCLP19338 710 aaKnown RBP19.28■□□□□ 0.68
LIG1-204ENST00000542460 KCNA10Q16322 511 aa19.28■□□□□ 0.68
LIG1-204ENST00000542460 MIS18BP1Q6P0N0 1132 aa19.28■□□□□ 0.68
LIG1-204ENST00000542460 MIER3Q7Z3K6 550 aa19.28■□□□□ 0.68
LIG1-204ENST00000542460 FERMT2Q96AC1 680 aa19.28■□□□□ 0.68
LIG1-204ENST00000542460 MOXD2PA6NHM9 499 aa19.27■□□□□ 0.68
LIG1-204ENST00000542460 SPTLC2O15270 562 aa19.27■□□□□ 0.68
LIG1-204ENST00000542460 PSAPP07602 524 aa19.27■□□□□ 0.68
LIG1-204ENST00000542460 MYL3P08590 195 aa19.27■□□□□ 0.68
LIG1-204ENST00000542460 MARCKSP29966 332 aaPredicted RBP19.27■□□□□ 0.68
LIG1-204ENST00000542460 IL17AQ16552 155 aa19.27■□□□□ 0.68
LIG1-204ENST00000542460 NCAPH2Q6IBW4 605 aa19.27■□□□□ 0.68
LIG1-204ENST00000542460 ANKLE1Q8NAG6 615 aa19.27■□□□□ 0.68
LIG1-204ENST00000542460 VWA3AA6NCI4 1184 aa19.26■□□□□ 0.67
LIG1-204ENST00000542460 EML1O00423 815 aa19.26■□□□□ 0.67
LIG1-204ENST00000542460 PPP6R2O75170 966 aa19.26■□□□□ 0.67
LIG1-204ENST00000542460 ASGR1P07306 291 aa19.26■□□□□ 0.67
LIG1-204ENST00000542460 SUPT20HL2P0C7V6 817 aa19.26■□□□□ 0.67
LIG1-204ENST00000542460 PURAQ00577 322 aaKnown RBP19.26■□□□□ 0.67
LIG1-204ENST00000542460 IGSF22Q8N9C0 903 aa19.26■□□□□ 0.67
LIG1-204ENST00000542460 KCNG4Q8TDN1 519 aa19.26■□□□□ 0.67
LIG1-204ENST00000542460 SCAND2PQ9GZW5 306 aaPredicted RBP19.26■□□□□ 0.67
LIG1-204ENST00000542460 AZI2Q9H6S1 392 aa19.26■□□□□ 0.67
LIG1-204ENST00000542460 LRWD1Q9UFC0 647 aa19.26■□□□□ 0.67
LIG1-204ENST00000542460 RCOR1Q9UKL0 485 aa19.26■□□□□ 0.67
LIG1-204ENST00000542460 SRPRBQ9Y5M8 271 aaKnown RBP19.26■□□□□ 0.67
LIG1-204ENST00000542460 IGKV6D-21A0A0A0MT36 114 aa19.25■□□□□ 0.67
LIG1-204ENST00000542460 POTEMA6NI47 508 aa19.25■□□□□ 0.67
LIG1-204ENST00000542460 LGR5O75473 907 aa19.25■□□□□ 0.67
LIG1-204ENST00000542460 LGALS2P05162 132 aa19.25■□□□□ 0.67
LIG1-204ENST00000542460 ACLYP53396 1101 aa19.25■□□□□ 0.67
LIG1-204ENST00000542460 EPHA7Q15375 998 aa19.25■□□□□ 0.67
LIG1-204ENST00000542460 UTP14CQ5TAP6 766 aaKnown RBP19.25■□□□□ 0.67
LIG1-204ENST00000542460 SWSAP1Q6NVH7 229 aa19.25■□□□□ 0.67
LIG1-204ENST00000542460 TNPO1Q92973 898 aaKnown RBP19.25■□□□□ 0.67
LIG1-204ENST00000542460 CHAMP1Q96JM3 812 aa19.25■□□□□ 0.67
LIG1-204ENST00000542460 FBXO2Q9UK22 296 aaPredicted RBP19.25■□□□□ 0.67
LIG1-204ENST00000542460 PHF24Q9UPV7 400 aa19.25■□□□□ 0.67
LIG1-204ENST00000542460 BACH1O14867 736 aa19.25■□□□□ 0.67
LIG1-204ENST00000542460 CABYRO75952 493 aa19.25■□□□□ 0.67
LIG1-204ENST00000542460 FAM160B1Q5W0V3 765 aa19.25■□□□□ 0.67
LIG1-204ENST00000542460 KRI1Q8N9T8 703 aaKnown RBP19.25■□□□□ 0.67
LIG1-204ENST00000542460 ERMNQ8TAM6 284 aa19.25■□□□□ 0.67
LIG1-204ENST00000542460 GLG1Q92896 1179 aa19.25■□□□□ 0.67
LIG1-204ENST00000542460 SPATA32Q96LK8 384 aa19.25■□□□□ 0.67
LIG1-204ENST00000542460 C16orf70Q9BSU1 422 aa19.25■□□□□ 0.67
LIG1-204ENST00000542460 MTG1Q9BT17 334 aaPredicted RBP19.25■□□□□ 0.67
LIG1-204ENST00000542460 SMARCAD1Q9H4L7 1026 aa19.25■□□□□ 0.67
LIG1-204ENST00000542460 STK24Q9Y6E0 443 aa19.25■□□□□ 0.67
LIG1-204ENST00000542460 EMSYQ7Z589 1322 aa19.24■□□□□ 0.67
LIG1-204ENST00000542460 ZNF286BP0CG31 522 aa19.24■□□□□ 0.67
LIG1-204ENST00000542460 LONP1P36776 959 aaKnown RBP19.24■□□□□ 0.67
LIG1-204ENST00000542460 STAT5BP51692 787 aa19.24■□□□□ 0.67
LIG1-204ENST00000542460 CXCL17Q6UXB2 119 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms