RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 SECISBP2LQ93073 1101 aaKnown RBP10.91□□□□□ -0.66
SS18-205ENST00000542420 JAKMIP2Q96AA8 810 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 WDR11Q9BZH6 1224 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 METTL14Q9HCE5 456 aaKnown RBP10.91□□□□□ -0.66
SS18-205ENST00000542420 FBXL5Q9UKA1 691 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 PCDHAC2Q9Y5I4 1007 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 IGLV3-22A0A075B6J6 115 aa10.9□□□□□ -0.66
SS18-205ENST00000542420 POTEB3A0JP26 581 aa10.9□□□□□ -0.66
SS18-205ENST00000542420 CTAGE15A4D2H0 777 aa10.9□□□□□ -0.66
SS18-205ENST00000542420 POTECB2RU33 542 aa10.9□□□□□ -0.66
SS18-205ENST00000542420 GCOM1H8Y6P7 765 aaPredicted RBP10.9□□□□□ -0.66
SS18-205ENST00000542420 OPLAHO14841 1288 aa10.9□□□□□ -0.66
SS18-205ENST00000542420 CETN3O15182 167 aa10.9□□□□□ -0.66
SS18-205ENST00000542420 MSH4O15457 936 aa10.9□□□□□ -0.66
SS18-205ENST00000542420 CALUO43852 315 aaPredicted RBP10.9□□□□□ -0.66
SS18-205ENST00000542420 POLR2MP0CAP2 368 aa10.9□□□□□ -0.66
SS18-205ENST00000542420 CTAGE8P0CG41 777 aa10.9□□□□□ -0.66
SS18-205ENST00000542420 SPATA31C1P0DKV0 1188 aa10.9□□□□□ -0.66
SS18-205ENST00000542420 FDX1P10109 184 aa10.9□□□□□ -0.66
SS18-205ENST00000542420 BCRP11274 1271 aa10.9□□□□□ -0.66
SS18-205ENST00000542420 PDXDC1Q6P996 788 aa10.9□□□□□ -0.66
SS18-205ENST00000542420 POTEBQ6S5H4 581 aa10.9□□□□□ -0.66
SS18-205ENST00000542420 KIAA1328Q86T90 577 aa10.9□□□□□ -0.66
SS18-205ENST00000542420 CTAGE6Q86UF2 777 aa10.9□□□□□ -0.66
SS18-205ENST00000542420 CTAGE4Q8IX94 777 aa10.9□□□□□ -0.66
SS18-205ENST00000542420 TRIM58Q8NG06 486 aa10.9□□□□□ -0.66
SS18-205ENST00000542420 CCDC42Q96M95 316 aa10.9□□□□□ -0.66
SS18-205ENST00000542420 PCMTD1Q96MG8 357 aaPredicted RBP10.9□□□□□ -0.66
SS18-205ENST00000542420 EMILIN3Q9NT22 766 aa10.9□□□□□ -0.66
SS18-205ENST00000542420 ZNRF3Q9ULT6 936 aa10.9□□□□□ -0.66
SS18-205ENST00000542420 A0A1W2PRG0 241 aa10.9□□□□□ -0.67
SS18-205ENST00000542420 E9PMD0 336 aa10.9□□□□□ -0.67
SS18-205ENST00000542420 ERLIN1O75477 346 aa10.9□□□□□ -0.67
SS18-205ENST00000542420 ASNSP08243 561 aa10.9□□□□□ -0.67
SS18-205ENST00000542420 KIF5AQ12840 1032 aa10.9□□□□□ -0.67
SS18-205ENST00000542420 IKQ13123 557 aaPredicted RBP10.9□□□□□ -0.67
SS18-205ENST00000542420 GIT2Q14161 759 aa10.9□□□□□ -0.67
SS18-205ENST00000542420 PRR16Q569H4 304 aa10.9□□□□□ -0.67
SS18-205ENST00000542420 CCDC122Q5T0U0 273 aa10.9□□□□□ -0.67
SS18-205ENST00000542420 IQCEQ6IPM2 695 aa10.9□□□□□ -0.67
SS18-205ENST00000542420 ZNF572Q7Z3I7 529 aaPredicted RBP10.9□□□□□ -0.67
SS18-205ENST00000542420 FMNL3Q8IVF7 1028 aa10.9□□□□□ -0.67
SS18-205ENST00000542420 RNF10Q8N5U6 811 aaKnown RBP10.9□□□□□ -0.67
SS18-205ENST00000542420 TMEM174Q8WUU8 243 aa10.9□□□□□ -0.67
SS18-205ENST00000542420 BAP1Q92560 729 aa10.9□□□□□ -0.67
SS18-205ENST00000542420 PLCB1Q9NQ66 1216 aa10.9□□□□□ -0.67
SS18-205ENST00000542420 AGPAT5Q9NUQ2 364 aa10.9□□□□□ -0.67
SS18-205ENST00000542420 PGAP2Q9UHJ9 254 aa10.9□□□□□ -0.67
SS18-205ENST00000542420 GTPBP10A4D1E9 387 aaKnown RBP10.89□□□□□ -0.67
SS18-205ENST00000542420 FAM196BA6NMK8 535 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 TRAF5O00463 557 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 RPL13P26373 211 aaKnown RBP10.89□□□□□ -0.67
SS18-205ENST00000542420 CAP2P40123 477 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 CCDC40Q4G0X9 1142 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 ARSHQ5FYA8 562 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 HERC4Q5GLZ8 1057 aaPredicted RBP10.89□□□□□ -0.67
SS18-205ENST00000542420 C10orf76Q5T2E6 689 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 STXBP4Q6ZWJ1 553 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 LARGE2Q8N3Y3 721 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 LRRN4CLQ8ND94 238 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 SCFD1Q8WVM8 642 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 LPAR1Q92633 364 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 TYW1Q9NV66 732 aaKnown RBP10.89□□□□□ -0.67
SS18-205ENST00000542420 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.89□□□□□ -0.67
SS18-205ENST00000542420 TSKSQ9UJT2 592 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 ODF2LQ9ULJ1 636 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 V9GYY5 206 aaPredicted RBP10.89□□□□□ -0.67
SS18-205ENST00000542420 COL4A5P29400 1685 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 CCDC66A2RUB6 948 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 FAM86B1E9PN63 330 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 PSMD10O75832 226 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 KRT18P05783 430 aaKnown RBP10.89□□□□□ -0.67
SS18-205ENST00000542420 FAM86B2P0C5J1 330 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 RPS12P25398 132 aaKnown RBP10.89□□□□□ -0.67
SS18-205ENST00000542420 TGFB2P61812 414 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 MYBPC2Q14324 1141 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 RRP1BQ14684 758 aaKnown RBP10.89□□□□□ -0.67
SS18-205ENST00000542420 KNOP1Q1ED39 458 aaKnown RBP10.89□□□□□ -0.67
SS18-205ENST00000542420 NIM1KQ8IY84 436 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 P2RX7Q99572 595 aaKnown RBP10.89□□□□□ -0.67
SS18-205ENST00000542420 RIT2Q99578 217 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 HSD17B14Q9BPX1 270 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 MKNK1Q9BUB5 465 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 ARFGAP3Q9NP61 516 aa10.89□□□□□ -0.67
SS18-205ENST00000542420 SMCHD1A6NHR9 2005 aa10.88□□□□□ -0.67
SS18-205ENST00000542420 FRMPD4Q14CM0 1322 aa10.88□□□□□ -0.67
SS18-205ENST00000542420 RPTORQ8N122 1335 aa10.88□□□□□ -0.67
SS18-205ENST00000542420 TARSL2A2RTX5 802 aaKnown RBP10.88□□□□□ -0.67
SS18-205ENST00000542420 C21orf2O43822 256 aa10.88□□□□□ -0.67
SS18-205ENST00000542420 TACC1O75410 805 aa10.88□□□□□ -0.67
SS18-205ENST00000542420 SERPING1P05155 500 aa10.88□□□□□ -0.67
SS18-205ENST00000542420 ZNF76P36508 570 aa10.88□□□□□ -0.67
SS18-205ENST00000542420 HSD17B4P51659 736 aa10.88□□□□□ -0.67
SS18-205ENST00000542420 PRELPP51888 382 aa10.88□□□□□ -0.67
SS18-205ENST00000542420 JAG1P78504 1218 aa10.88□□□□□ -0.67
SS18-205ENST00000542420 ASTE1Q2TB18 679 aaPredicted RBP10.88□□□□□ -0.67
SS18-205ENST00000542420 TEX35Q5T0J7 233 aa10.88□□□□□ -0.67
SS18-205ENST00000542420 NCAPH2Q6IBW4 605 aa10.88□□□□□ -0.67
SS18-205ENST00000542420 CC2D1AQ6P1N0 951 aaPredicted RBP10.88□□□□□ -0.67
SS18-205ENST00000542420 WDR93Q6P2C0 686 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms