RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, human

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP28-210	ENST00000542033	ZCCHC8	Q6NZY4	707 aa	Known RBP	4.61	□□□□□ -1.67
USP28-210	ENST00000542033	CNNM4	Q6P4Q7	775 aa		4.61	□□□□□ -1.67
USP28-210	ENST00000542033	TTLL7	Q6ZT98	887 aa		4.61	□□□□□ -1.67
USP28-210	ENST00000542033	KCTD1	Q719H9	257 aa		4.61	□□□□□ -1.67
USP28-210	ENST00000542033	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	4.61	□□□□□ -1.67
USP28-210	ENST00000542033	OSTM1	Q86WC4	334 aa		4.61	□□□□□ -1.67
USP28-210	ENST00000542033	PTRH1	Q86Y79	214 aa	Known RBP	4.61	□□□□□ -1.67
USP28-210	ENST00000542033	TTLL6	Q8N841	843 aa		4.61	□□□□□ -1.67
USP28-210	ENST00000542033	ARRDC4	Q8NCT1	418 aa		4.61	□□□□□ -1.67
USP28-210	ENST00000542033	FNIP1	Q8TF40	1166 aa		4.61	□□□□□ -1.67
USP28-210	ENST00000542033	MFSD3	Q96ES6	412 aa		4.61	□□□□□ -1.67
USP28-210	ENST00000542033	TOE1	Q96GM8	510 aa	Known RBP	4.61	□□□□□ -1.67
USP28-210	ENST00000542033	KRTAP4-5	Q9BYR2	181 aa		4.61	□□□□□ -1.67
USP28-210	ENST00000542033	CD244	Q9BZW8	370 aa		4.61	□□□□□ -1.67
USP28-210	ENST00000542033	DTL	Q9NZJ0	730 aa		4.61	□□□□□ -1.67
USP28-210	ENST00000542033	SAMD15	Q9P1V8	674 aa		4.61	□□□□□ -1.67
USP28-210	ENST00000542033	ASH2L	Q9UBL3	628 aa		4.61	□□□□□ -1.67
USP28-210	ENST00000542033	CBLC	Q9ULV8	474 aa		4.61	□□□□□ -1.67
USP28-210	ENST00000542033	PLA2G1B	P04054	148 aa	Known RBP	4.6	□□□□□ -1.67
USP28-210	ENST00000542033	JMJD7	P0C870	316 aa		4.6	□□□□□ -1.67
USP28-210	ENST00000542033	BMP7	P18075	431 aa		4.6	□□□□□ -1.67
USP28-210	ENST00000542033	NCL	P19338	710 aa	Known RBP	4.6	□□□□□ -1.67
USP28-210	ENST00000542033	STAT5A	P42229	794 aa		4.6	□□□□□ -1.67
USP28-210	ENST00000542033	GYS2	P54840	703 aa		4.6	□□□□□ -1.67
USP28-210	ENST00000542033	JAM2	P57087	298 aa		4.6	□□□□□ -1.67
USP28-210	ENST00000542033	LACTB	P83111	547 aa	Predicted RBP	4.6	□□□□□ -1.67
USP28-210	ENST00000542033	GRIN1	Q05586	938 aa		4.6	□□□□□ -1.67
USP28-210	ENST00000542033	ZNF460	Q14592	562 aa		4.6	□□□□□ -1.67
USP28-210	ENST00000542033	CFAP100	Q494V2	611 aa		4.6	□□□□□ -1.67
USP28-210	ENST00000542033	TMEM177	Q53S58	311 aa		4.6	□□□□□ -1.67
USP28-210	ENST00000542033	DALRD3	Q5D0E6	543 aa	Known RBP	4.6	□□□□□ -1.67
USP28-210	ENST00000542033	PIK3R6	Q5UE93	754 aa		4.6	□□□□□ -1.67
USP28-210	ENST00000542033	ABHD17C	Q6PCB6	329 aa		4.6	□□□□□ -1.67
USP28-210	ENST00000542033	SAPCD2	Q86UD0	394 aa		4.6	□□□□□ -1.67
USP28-210	ENST00000542033	RBM12B	Q8IXT5	1001 aa	Known RBP	4.6	□□□□□ -1.67
USP28-210	ENST00000542033	C2orf69	Q8N8R5	385 aa		4.6	□□□□□ -1.67
USP28-210	ENST00000542033	TTLL11	Q8NHH1	800 aa		4.6	□□□□□ -1.67
USP28-210	ENST00000542033	ZBTB8A	Q96BR9	441 aa		4.6	□□□□□ -1.67
USP28-210	ENST00000542033	WRNIP1	Q96S55	665 aa		4.6	□□□□□ -1.67
USP28-210	ENST00000542033	ZCCHC4	Q9H5U6	513 aa		4.6	□□□□□ -1.67
USP28-210	ENST00000542033	CABP5	Q9NP86	173 aa		4.6	□□□□□ -1.67
USP28-210	ENST00000542033	LUC7L	Q9NQ29	371 aa	Known RBP	4.6	□□□□□ -1.67
USP28-210	ENST00000542033	NTM	Q9P121	344 aa		4.6	□□□□□ -1.67
USP28-210	ENST00000542033	RAPGEFL1	Q9UHV5	662 aa		4.6	□□□□□ -1.67
USP28-210	ENST00000542033	SRPK3	Q9UPE1	567 aa		4.6	□□□□□ -1.67
USP28-210	ENST00000542033	ATP23	Q9Y6H3	246 aa		4.6	□□□□□ -1.67
USP28-210	ENST00000542033	CADPS	Q9ULU8	1353 aa		4.6	□□□□□ -1.67
USP28-210	ENST00000542033	SH3D21	A4FU49	640 aa		4.59	□□□□□ -1.67
USP28-210	ENST00000542033	ZNF561-AS1	K7EIQ3	104 aa		4.59	□□□□□ -1.67
USP28-210	ENST00000542033		M0R2C6	588 aa		4.59	□□□□□ -1.67
USP28-210	ENST00000542033	CYP7B1	O75881	506 aa		4.59	□□□□□ -1.67
USP28-210	ENST00000542033	LTF	P02788	710 aa		4.59	□□□□□ -1.67
USP28-210	ENST00000542033	KCNA6	P17658	529 aa		4.59	□□□□□ -1.67
USP28-210	ENST00000542033	FIGN	Q5HY92	759 aa		4.59	□□□□□ -1.67
USP28-210	ENST00000542033	BTBD8	Q5XKL5	378 aa		4.59	□□□□□ -1.67
USP28-210	ENST00000542033	CDCA2	Q69YH5	1023 aa	Predicted RBP	4.59	□□□□□ -1.67
USP28-210	ENST00000542033	LRRTM3	Q86VH5	581 aa		4.59	□□□□□ -1.67
USP28-210	ENST00000542033	PPM1K	Q8N3J5	372 aa		4.59	□□□□□ -1.67
USP28-210	ENST00000542033	LINC00482	Q8N8I6	264 aa		4.59	□□□□□ -1.67
USP28-210	ENST00000542033	MARCH10	Q8NA82	808 aa	Predicted RBP	4.59	□□□□□ -1.67
USP28-210	ENST00000542033	KY	Q8NBH2	561 aa		4.59	□□□□□ -1.67
USP28-210	ENST00000542033	CLEC4D	Q8WXI8	215 aa		4.59	□□□□□ -1.67
USP28-210	ENST00000542033	WNK4	Q96J92	1243 aa		4.59	□□□□□ -1.67
USP28-210	ENST00000542033	TMEM209	Q96SK2	561 aa		4.59	□□□□□ -1.67
USP28-210	ENST00000542033	C11orf84	Q9BUA3	381 aa	Predicted RBP	4.59	□□□□□ -1.67
USP28-210	ENST00000542033	RIC8B	Q9NVN3	520 aa		4.59	□□□□□ -1.67
USP28-210	ENST00000542033	TCRBV5S4A2T	A0A5A2	114 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	SLC12A8	A0AV02	714 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	MAN2B1	O00754	1011 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	KCNK3	O14649	394 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	FFAR3	O14843	346 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	KPNA6	O60684	536 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	HIP1R	O75146	1068 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	GLRX3	O76003	335 aa	Known RBP	4.58	□□□□□ -1.68
USP28-210	ENST00000542033	AMY2A	P04746	511 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	MYCLP1	P12525	358 aa	Predicted RBP	4.58	□□□□□ -1.68
USP28-210	ENST00000542033	AMY2B	P19961	511 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	GJA4	P35212	333 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	KCNC1	P48547	511 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	EPHA5	P54756	1037 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	ARHGAP44	Q17R89	818 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	VMAC	Q2NL98	169 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	VWA3B	Q502W6	1294 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	PAN2	Q504Q3	1202 aa	Known RBP	4.58	□□□□□ -1.68
USP28-210	ENST00000542033	TM4SF20	Q53R12	229 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	LCE4A	Q5TA78	99 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	TEPP	Q6URK8	271 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	LIPI	Q6XZB0	460 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	OVCH1	Q7RTY7	1134 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	AHI1	Q8N157	1196 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	FAM26E	Q8N5C1	309 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	CHST14	Q8NCH0	376 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	SH3RF2	Q8TEC5	729 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	DDX1	Q92499	740 aa	Known RBP	4.58	□□□□□ -1.68
USP28-210	ENST00000542033	CLIC6	Q96NY7	704 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	KCNC2	Q96PR1	638 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	GORASP1	Q9BQQ3	440 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	SMURF1	Q9HCE7	757 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	PARD6A	Q9NPB6	346 aa		4.58	□□□□□ -1.68
USP28-210	ENST00000542033	SCD	O00767	359 aa		4.57	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms