RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 CRYGNQ8WXF5 182 aa13.19□□□□□ -0.3
RTN3-209ENST00000538995 ATP6V0A1Q93050 837 aa13.19□□□□□ -0.3
RTN3-209ENST00000538995 IL17RAQ96F46 866 aa13.19□□□□□ -0.3
RTN3-209ENST00000538995 FAM161BQ96MY7 647 aa13.19□□□□□ -0.3
RTN3-209ENST00000538995 SLC9A7Q96T83 725 aa13.19□□□□□ -0.3
RTN3-209ENST00000538995 CDX2Q99626 313 aaPredicted RBP13.19□□□□□ -0.3
RTN3-209ENST00000538995 SDF4Q9BRK5 362 aa13.19□□□□□ -0.3
RTN3-209ENST00000538995 SLC26A6Q9BXS9 759 aa13.19□□□□□ -0.3
RTN3-209ENST00000538995 NCOA5Q9HCD5 579 aaKnown RBP13.19□□□□□ -0.3
RTN3-209ENST00000538995 PDRG1Q9NUG6 133 aa13.19□□□□□ -0.3
RTN3-209ENST00000538995 MSRAQ9UJ68 235 aa13.19□□□□□ -0.3
RTN3-209ENST00000538995 CDH23Q9H251 3354 aa13.19□□□□□ -0.3
RTN3-209ENST00000538995 NRCAMQ92823 1304 aa13.18□□□□□ -0.3
RTN3-209ENST00000538995 CPLX1O14810 134 aa13.18□□□□□ -0.3
RTN3-209ENST00000538995 ATP2A2P16615 1042 aaKnown RBP13.18□□□□□ -0.3
RTN3-209ENST00000538995 CCT2P78371 535 aaKnown RBP13.18□□□□□ -0.3
RTN3-209ENST00000538995 ZNF200P98182 395 aaPredicted RBP13.18□□□□□ -0.3
RTN3-209ENST00000538995 SETQ01105 290 aaPredicted RBP13.18□□□□□ -0.3
RTN3-209ENST00000538995 HIC1Q14526 733 aa13.18□□□□□ -0.3
RTN3-209ENST00000538995 UTP14CQ5TAP6 766 aaKnown RBP13.18□□□□□ -0.3
RTN3-209ENST00000538995 JAKMIP3Q5VZ66 844 aa13.18□□□□□ -0.3
RTN3-209ENST00000538995 TRAF7Q6Q0C0 670 aa13.18□□□□□ -0.3
RTN3-209ENST00000538995 PGBD1Q96JS3 809 aa13.18□□□□□ -0.3
RTN3-209ENST00000538995 FTOQ9C0B1 505 aaKnown RBP eCLIP13.18□□□□□ -0.3
RTN3-209ENST00000538995 RNPEPQ9H4A4 650 aa13.18□□□□□ -0.3
RTN3-209ENST00000538995 SMARCAD1Q9H4L7 1026 aa13.18□□□□□ -0.3
RTN3-209ENST00000538995 ZNF576Q9H609 170 aa13.18□□□□□ -0.3
RTN3-209ENST00000538995 AGO4Q9HCK5 861 aaKnown RBP13.18□□□□□ -0.3
RTN3-209ENST00000538995 TMEM260Q9NX78 707 aa13.18□□□□□ -0.3
RTN3-209ENST00000538995 ERAP1Q9NZ08 941 aa13.18□□□□□ -0.3
RTN3-209ENST00000538995 SLC9A2Q9UBY0 812 aa13.18□□□□□ -0.3
RTN3-209ENST00000538995 MYH7BA7E2Y1 1941 aa13.17□□□□□ -0.3
RTN3-209ENST00000538995 CHD9Q3L8U1 2897 aa13.17□□□□□ -0.3
RTN3-209ENST00000538995 GSTTP1A0A1W2PQM5 241 aa13.17□□□□□ -0.3
RTN3-209ENST00000538995 GRXCR1A8MXD5 290 aa13.17□□□□□ -0.3
RTN3-209ENST00000538995 EFCAB14O75071 495 aa13.17□□□□□ -0.3
RTN3-209ENST00000538995 LGR5O75473 907 aa13.17□□□□□ -0.3
RTN3-209ENST00000538995 DEXIO95424 95 aa13.17□□□□□ -0.3
RTN3-209ENST00000538995 KCNA4P22459 653 aa13.17□□□□□ -0.3
RTN3-209ENST00000538995 ZNF76P36508 570 aa13.17□□□□□ -0.3
RTN3-209ENST00000538995 ADAM17P78536 824 aa13.17□□□□□ -0.3
RTN3-209ENST00000538995 SSRP1Q08945 709 aaKnown RBP13.17□□□□□ -0.3
RTN3-209ENST00000538995 GPNMBQ14956 572 aa13.17□□□□□ -0.3
RTN3-209ENST00000538995 ZNF618Q5T7W0 954 aa13.17□□□□□ -0.3
RTN3-209ENST00000538995 CNKSR3Q6P9H4 555 aa13.17□□□□□ -0.3
RTN3-209ENST00000538995 CYP2W1Q8TAV3 490 aa13.17□□□□□ -0.3
RTN3-209ENST00000538995 LMBR1Q8WVP7 490 aa13.17□□□□□ -0.3
RTN3-209ENST00000538995 TNPO1Q92973 898 aaKnown RBP13.17□□□□□ -0.3
RTN3-209ENST00000538995 WNT8BQ93098 351 aa13.17□□□□□ -0.3
RTN3-209ENST00000538995 PKD2L1Q9P0L9 805 aa13.17□□□□□ -0.3
RTN3-209ENST00000538995 TELO2Q9Y4R8 837 aa13.17□□□□□ -0.3
RTN3-209ENST00000538995 PCDHA11Q9Y5I1 949 aa13.17□□□□□ -0.3
RTN3-209ENST00000538995 IGLV3-22A0A075B6J6 115 aa13.16□□□□□ -0.3
RTN3-209ENST00000538995 ABHD14A-ACY1A0A1B0GW23 586 aa13.16□□□□□ -0.3
RTN3-209ENST00000538995 RSPH10B2B2RC85 870 aa13.16□□□□□ -0.3
RTN3-209ENST00000538995 FAM86B1E9PN63 330 aa13.16□□□□□ -0.3
RTN3-209ENST00000538995 TREHO43280 583 aa13.16□□□□□ -0.3
RTN3-209ENST00000538995 NBNO60934 754 aa13.16□□□□□ -0.3
RTN3-209ENST00000538995 CDKL5O76039 1030 aa13.16□□□□□ -0.3
RTN3-209ENST00000538995 RPLP2P05387 115 aaKnown RBP13.16□□□□□ -0.3
RTN3-209ENST00000538995 FAM86B2P0C5J1 330 aa13.16□□□□□ -0.3
RTN3-209ENST00000538995 RSPH10BP0C881 870 aa13.16□□□□□ -0.3
RTN3-209ENST00000538995 ARP10275 920 aa13.16□□□□□ -0.3
RTN3-209ENST00000538995 CIITAP33076 1130 aa13.16□□□□□ -0.3
RTN3-209ENST00000538995 THPOP40225 353 aa13.16□□□□□ -0.3
RTN3-209ENST00000538995 PBX2P40425 430 aa13.16□□□□□ -0.3
RTN3-209ENST00000538995 ACTR2P61160 394 aa13.16□□□□□ -0.3
RTN3-209ENST00000538995 PPFIA1Q13136 1202 aa13.16□□□□□ -0.3
RTN3-209ENST00000538995 ITGB3BPQ13352 177 aaPredicted RBP13.16□□□□□ -0.3
RTN3-209ENST00000538995 ANKRD1Q15327 319 aa13.16□□□□□ -0.3
RTN3-209ENST00000538995 TAF2Q6P1X5 1199 aa13.16□□□□□ -0.3
RTN3-209ENST00000538995 RPAINQ86UA6 219 aa13.16□□□□□ -0.3
RTN3-209ENST00000538995 PLA2G4DQ86XP0 818 aa13.16□□□□□ -0.3
RTN3-209ENST00000538995 GLG1Q92896 1179 aa13.16□□□□□ -0.3
RTN3-209ENST00000538995 C22orf23Q9BZE7 217 aa13.16□□□□□ -0.3
RTN3-209ENST00000538995 AZI2Q9H6S1 392 aa13.16□□□□□ -0.3
RTN3-209ENST00000538995 SETD4Q9NVD3 440 aa13.16□□□□□ -0.3
RTN3-209ENST00000538995 VPS54Q9P1Q0 977 aa13.16□□□□□ -0.3
RTN3-209ENST00000538995 ATG7O95352 703 aa13.15□□□□□ -0.3
RTN3-209ENST00000538995 KCNJ6P48051 423 aa13.15□□□□□ -0.3
RTN3-209ENST00000538995 SLC26A2P50443 739 aa13.15□□□□□ -0.3
RTN3-209ENST00000538995 MBTPS1Q14703 1052 aa13.15□□□□□ -0.3
RTN3-209ENST00000538995 GRIN2CQ14957 1233 aa13.15□□□□□ -0.3
RTN3-209ENST00000538995 GALNT17Q6IS24 598 aa13.15□□□□□ -0.3
RTN3-209ENST00000538995 PLPPR4Q7Z2D5 763 aa13.15□□□□□ -0.3
RTN3-209ENST00000538995 DAGLBQ8NCG7 672 aa13.15□□□□□ -0.3
RTN3-209ENST00000538995 SLC28A3Q9HAS3 691 aa13.15□□□□□ -0.3
RTN3-209ENST00000538995 YBX2Q9Y2T7 364 aaKnown RBP13.15□□□□□ -0.3
RTN3-209ENST00000538995 STK36Q9NRP7 1315 aa13.14□□□□□ -0.31
RTN3-209ENST00000538995 SCN5AQ14524 2016 aa13.14□□□□□ -0.31
RTN3-209ENST00000538995 MBLAC1A4D2B0 266 aaPredicted RBP13.14□□□□□ -0.31
RTN3-209ENST00000538995 RRN3P2A6NIE6 340 aa13.14□□□□□ -0.31
RTN3-209ENST00000538995 IPO5O00410 1097 aaKnown RBP13.14□□□□□ -0.31
RTN3-209ENST00000538995 PFKFB2O60825 505 aa13.14□□□□□ -0.31
RTN3-209ENST00000538995 FOSL2P15408 326 aa13.14□□□□□ -0.31
RTN3-209ENST00000538995 MARK3P27448 753 aa13.14□□□□□ -0.31
RTN3-209ENST00000538995 NLRP5P59047 1200 aa13.14□□□□□ -0.31
RTN3-209ENST00000538995 WDR5P61964 334 aaKnown RBP13.14□□□□□ -0.31
RTN3-209ENST00000538995 GRIK4Q16099 956 aa13.14□□□□□ -0.31
RTN3-209ENST00000538995 FAM26DQ5JW98 314 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms