RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 ZNF277Q9NRM2 450 aaPredicted RBP7.33□□□□□ -1.24
USP28-206ENST00000538224 OLFML3Q9NRN5 406 aa7.33□□□□□ -1.24
USP28-206ENST00000538224 EMILIN3Q9NT22 766 aa7.33□□□□□ -1.24
USP28-206ENST00000538224 TYW1Q9NV66 732 aaKnown RBP7.33□□□□□ -1.24
USP28-206ENST00000538224 PIM2Q9P1W9 311 aa7.33□□□□□ -1.24
USP28-206ENST00000538224 DDX41Q9UJV9 622 aaKnown RBP7.33□□□□□ -1.24
USP28-206ENST00000538224 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.33□□□□□ -1.24
USP28-206ENST00000538224 PHIPQ8WWQ0 1821 aa7.33□□□□□ -1.24
USP28-206ENST00000538224 DICER1Q9UPY3 1922 aaKnown RBP7.33□□□□□ -1.24
USP28-206ENST00000538224 ATP8B3O60423 1300 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 FRMPD4Q14CM0 1322 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 ARID2Q68CP9 1835 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 IGLV3-22A0A075B6J6 115 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 SSU72P8A0A1W2PR75 194 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 FAM86B1E9PN63 330 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 PDXKO00764 312 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 OPLAHO14841 1288 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 GAS7O60861 476 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 ERLIN1O75477 346 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 LCA5LO95447 670 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 CFBP00751 764 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 ICAM1P05362 532 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 FAM86B2P0C5J1 330 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 BCRP11274 1271 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 DPEP1P16444 411 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 ANXA13P27216 316 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 POLD1P28340 1107 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 ARHGAP25P42331 645 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 PRELPP51888 382 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 GHRHRQ02643 423 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 MAPK8IP2Q13387 824 aaPredicted RBP7.32□□□□□ -1.24
USP28-206ENST00000538224 ALCAMQ13740 583 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 GIT2Q14161 759 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 BRD3Q15059 726 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 ECM1Q16610 540 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 KNOP1Q1ED39 458 aaKnown RBP7.32□□□□□ -1.24
USP28-206ENST00000538224 SHROOM1Q2M3G4 852 aaPredicted RBP7.32□□□□□ -1.24
USP28-206ENST00000538224 CEP55Q53EZ4 464 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 CCDC122Q5T0U0 273 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 WDR59Q6PJI9 974 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 FRMD5Q7Z6J6 570 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 CATSPER3Q86XQ3 398 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 TRIM59Q8IWR1 403 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 SMAP1Q8IYB5 467 aaPredicted RBP7.32□□□□□ -1.24
USP28-206ENST00000538224 CCDC155Q8N6L0 562 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 TRIM58Q8NG06 486 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 GOLGA5Q8TBA6 731 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 HPS3Q969F9 1004 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 ALS2CR12Q96Q35 445 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 NACC1Q96RE7 527 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 RIT2Q99578 217 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 CHP1Q99653 195 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 EIF2AK1Q9BQI3 630 aaKnown RBP7.32□□□□□ -1.24
USP28-206ENST00000538224 TEKT3Q9BXF9 490 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 TAOK3Q9H2K8 898 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 MMRN2Q9H8L6 949 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.32□□□□□ -1.24
USP28-206ENST00000538224 TCEAL9Q9UHQ7 104 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 ODF2LQ9ULJ1 636 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 MYO6Q9UM54 1294 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 TRAF3IP3Q9Y228 551 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 PCDHA2Q9Y5H9 948 aa7.32□□□□□ -1.24
USP28-206ENST00000538224 V9GYY5 206 aaPredicted RBP7.32□□□□□ -1.24
USP28-206ENST00000538224 LTBP3Q9NS15 1303 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 WDR81Q562E7 1941 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 CTAGE15A4D2H0 777 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 CCDC151A5D8V7 595 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 RNF225M0QZC1 329 aaPredicted RBP7.31□□□□□ -1.24
USP28-206ENST00000538224 FANCGO15287 622 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 AKR1B10O60218 316 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 TACC1O75410 805 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 PSMD10O75832 226 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 FAM13AO94988 1023 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 SERPING1P05155 500 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 CTAGE8P0CG41 777 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 SPATA31C1P0DKV0 1188 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 SLURP2P0DP57 97 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 EPB41P11171 864 aaKnown RBP7.31□□□□□ -1.24
USP28-206ENST00000538224 KCNA3P22001 575 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 STAT3P40763 770 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 ECE1P42892 770 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 HSD17B4P51659 736 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 KIF11P52732 1056 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 USP14P54578 494 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 ZNF280AP59817 542 aaPredicted RBP7.31□□□□□ -1.24
USP28-206ENST00000538224 HERVK_113P62684 666 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 GABPB1Q06547 395 aaPredicted RBP7.31□□□□□ -1.24
USP28-206ENST00000538224 PABPC4Q13310 644 aaKnown RBP eCLIP7.31□□□□□ -1.24
USP28-206ENST00000538224 ADAM9Q13443 819 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 RRP1BQ14684 758 aaKnown RBP7.31□□□□□ -1.24
USP28-206ENST00000538224 NAA30Q147X3 362 aaPredicted RBP7.31□□□□□ -1.24
USP28-206ENST00000538224 EPHA7Q15375 998 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 SLC9C1Q4G0N8 1177 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 DALRD3Q5D0E6 543 aaKnown RBP7.31□□□□□ -1.24
USP28-206ENST00000538224 TEX35Q5T0J7 233 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 DCAF15Q66K64 600 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 CCDC70Q6NSX1 233 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 PDXDC1Q6P996 788 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 CCDC174Q6PII3 467 aa7.31□□□□□ -1.24
USP28-206ENST00000538224 EPM2AIP1Q7L775 607 aaPredicted RBP7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms