RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 MSH4O15457 936 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 CCP110O43303 1012 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 SLC26A4O43511 780 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 TUBB4AP04350 444 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 HNRNPH2P55795 449 aaKnown RBP11.94□□□□□ -0.5
CLIP1-210ENST00000538120 TBC1D10BQ4KMP7 808 aaPredicted RBP11.94□□□□□ -0.5
CLIP1-210ENST00000538120 POTEBQ6S5H4 581 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 FCHSD1Q86WN1 690 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 NEK11Q8NG66 645 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 ZNF341Q9BYN7 854 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 IRX2Q9BZI1 471 aaPredicted RBP11.94□□□□□ -0.5
CLIP1-210ENST00000538120 ARGLU1Q9NWB6 273 aaPredicted RBP11.94□□□□□ -0.5
CLIP1-210ENST00000538120 CNOT7Q9UIV1 285 aaKnown RBP11.94□□□□□ -0.5
CLIP1-210ENST00000538120 SMCHD1A6NHR9 2005 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 KDM3AQ9Y4C1 1321 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 IGLV3-22A0A075B6J6 115 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 RNF225M0QZC1 329 aaPredicted RBP11.94□□□□□ -0.5
CLIP1-210ENST00000538120 ARHGAP6O43182 974 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 STX10O60499 249 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 TBC1D8O95759 1140 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 GYPCP04921 128 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 EEF1GP26641 437 aaKnown RBP11.94□□□□□ -0.5
CLIP1-210ENST00000538120 MTF1Q14872 753 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 CENPPQ6IPU0 288 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 GLIS3Q8NEA6 775 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 ZNF507Q8TCN5 953 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 NOC3LQ8WTT2 800 aaKnown RBP11.94□□□□□ -0.5
CLIP1-210ENST00000538120 PANX2Q96RD6 677 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 HACL1Q9UJ83 578 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 VAV3Q9UKW4 847 aa11.94□□□□□ -0.5
CLIP1-210ENST00000538120 ZNF536O15090 1300 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 A0A0U1RQJ8 604 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 CLGNO14967 610 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 NKRFO15226 690 aaKnown RBP eCLIP11.93□□□□□ -0.5
CLIP1-210ENST00000538120 CFBP00751 764 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 SPATA31C1P0DKV0 1188 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 PPP1R2P41236 205 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 FXR1P51114 621 aaKnown RBP eCLIP11.93□□□□□ -0.5
CLIP1-210ENST00000538120 TRAF1Q13077 416 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 DGKZQ13574 1117 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 TEX35Q5T0J7 233 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 LDHDQ86WU2 507 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 CSGALNACT2Q8N6G5 542 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 CPLX3Q8WVH0 158 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 ATRIPQ8WXE1 791 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 FAM20AQ96MK3 541 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 WDR18Q9BV38 432 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 LRRC27Q9C0I9 530 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 NT5C3AQ9H0P0 336 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 ARIH1Q9Y4X5 557 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-210ENST00000538120 GJA3Q9Y6H8 435 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 ZNF541Q9H0D2 1346 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 GCOM1H8Y6P7 765 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-210ENST00000538120 DPYSL4O14531 572 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 ZSCAN12O43309 604 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 MFAP3LO75121 409 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 PLA2G4BP0C869 781 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 POLR2MP0CAP2 368 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 CASQ1P31415 396 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 CASP14P31944 242 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 GYS2P54840 703 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 MAP3K9P80192 1104 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 TNFAIP1Q13829 316 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 CC2D1AQ6P1N0 951 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-210ENST00000538120 PPFIBP1Q86W92 1011 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 CATSPER3Q86XQ3 398 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 CREBRFQ8IUR6 639 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 NLGN2Q8NFZ4 835 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 PTCD2Q8WV60 388 aaKnown RBP11.93□□□□□ -0.5
CLIP1-210ENST00000538120 EEF2KMTQ96G04 330 aa11.93□□□□□ -0.5
CLIP1-210ENST00000538120 MRPL11Q9Y3B7 192 aaKnown RBP11.93□□□□□ -0.5
CLIP1-210ENST00000538120 BICDL2A1A5D9 508 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 LGALS16A8MUM7 142 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 FECHP22830 423 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 PPP2R3AQ06190 1150 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 ARSHQ5FYA8 562 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 NBPF12Q5TAG4 269 aaPredicted RBP11.92□□□□□ -0.5
CLIP1-210ENST00000538120 NCAPH2Q6IBW4 605 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 GUF1Q8N442 669 aaKnown RBP11.92□□□□□ -0.5
CLIP1-210ENST00000538120 MB21D1Q8N884 522 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 ANKRD20A12PQ8NF67 263 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 AGBL1Q96MI9 1066 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 DEFB129Q9H1M3 183 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 ZSWIM4Q9H7M6 989 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 MRFAP1Q9Y605 127 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 NPHP3-ACAD11A0A0J9YXS1 232 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 IDEP14735 1019 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 CYP11B2P19099 503 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 OAS2P29728 719 aaKnown RBP11.92□□□□□ -0.5
CLIP1-210ENST00000538120 SLC12A3P55017 1021 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 PSMC6P62333 389 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 UBXN1Q04323 297 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 COASYQ13057 564 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 PSMD2Q13200 908 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 LRRC41Q15345 812 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 POTEGQ6S5H5 508 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 POTEEQ6S8J3 1075 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 RETREG2Q8NC44 543 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 PARD6BQ9BYG5 372 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 KIAA1683Q9H0B3 1180 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms