RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 HAS3O00219 553 aa9.4□□□□□ -0.9
NEDD8-207ENST00000533242 LGR5O75473 907 aa9.4□□□□□ -0.9
NEDD8-207ENST00000533242 AMHP03971 560 aa9.4□□□□□ -0.9
NEDD8-207ENST00000533242 IL9P15248 144 aa9.4□□□□□ -0.9
NEDD8-207ENST00000533242 HAND2P61296 217 aa9.4□□□□□ -0.9
NEDD8-207ENST00000533242 MFSD10Q14728 455 aa9.4□□□□□ -0.9
NEDD8-207ENST00000533242 PTPROQ16827 1216 aa9.4□□□□□ -0.9
NEDD8-207ENST00000533242 LY6KQ17RY6 165 aa9.4□□□□□ -0.9
NEDD8-207ENST00000533242 TIGD5Q53EQ6 642 aa9.4□□□□□ -0.9
NEDD8-207ENST00000533242 SEPT14Q6ZU15 432 aa9.4□□□□□ -0.9
NEDD8-207ENST00000533242 DHX32Q7L7V1 743 aaKnown RBP9.4□□□□□ -0.9
NEDD8-207ENST00000533242 C7orf31Q8N865 590 aa9.4□□□□□ -0.9
NEDD8-207ENST00000533242 SP7Q8TDD2 431 aaPredicted RBP9.4□□□□□ -0.9
NEDD8-207ENST00000533242 NSUN6Q8TEA1 469 aaKnown RBP9.4□□□□□ -0.9
NEDD8-207ENST00000533242 LEO1Q8WVC0 666 aaPredicted RBP9.4□□□□□ -0.9
NEDD8-207ENST00000533242 MRPL38Q96DV4 380 aaKnown RBP9.4□□□□□ -0.9
NEDD8-207ENST00000533242 DSCC1Q9BVC3 393 aa9.4□□□□□ -0.9
NEDD8-207ENST00000533242 TOMM22Q9NS69 142 aa9.4□□□□□ -0.9
NEDD8-207ENST00000533242 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.4□□□□□ -0.9
NEDD8-207ENST00000533242 ZNF500O60304 480 aaPredicted RBP9.4□□□□□ -0.9
NEDD8-207ENST00000533242 OFD1O75665 1012 aa9.4□□□□□ -0.9
NEDD8-207ENST00000533242 ADD1P35611 737 aaKnown RBP9.4□□□□□ -0.9
NEDD8-207ENST00000533242 HTRA4P83105 476 aaPredicted RBP9.4□□□□□ -0.9
NEDD8-207ENST00000533242 MKRN4PQ13434 485 aaPredicted RBP9.4□□□□□ -0.9
NEDD8-207ENST00000533242 STXBP2Q15833 593 aa9.4□□□□□ -0.9
NEDD8-207ENST00000533242 CSPP1Q1MSJ5 1256 aa9.4□□□□□ -0.9
NEDD8-207ENST00000533242 RRP12Q5JTH9 1297 aaKnown RBP9.4□□□□□ -0.9
NEDD8-207ENST00000533242 SMARCC2Q8TAQ2 1214 aa9.4□□□□□ -0.9
NEDD8-207ENST00000533242 NEK9Q8TD19 979 aa9.4□□□□□ -0.9
NEDD8-207ENST00000533242 TAAR1Q96RJ0 339 aa9.4□□□□□ -0.9
NEDD8-207ENST00000533242 ALG1Q9BT22 464 aa9.4□□□□□ -0.9
NEDD8-207ENST00000533242 AGXT2Q9BYV1 514 aa9.4□□□□□ -0.9
NEDD8-207ENST00000533242 DACT1Q9NYF0 836 aa9.4□□□□□ -0.9
NEDD8-207ENST00000533242 ZMYM6O95789 1325 aa9.4□□□□□ -0.9
NEDD8-207ENST00000533242 EMSYQ7Z589 1322 aa9.4□□□□□ -0.9
NEDD8-207ENST00000533242 PFKFB2O60825 505 aa9.39□□□□□ -0.91
NEDD8-207ENST00000533242 ADCY5O95622 1261 aa9.39□□□□□ -0.91
NEDD8-207ENST00000533242 F2P00734 622 aa9.39□□□□□ -0.91
NEDD8-207ENST00000533242 PCP11498 1178 aaKnown RBP9.39□□□□□ -0.91
NEDD8-207ENST00000533242 PDCP20941 246 aa9.39□□□□□ -0.91
NEDD8-207ENST00000533242 USH1GQ495M9 461 aa9.39□□□□□ -0.91
NEDD8-207ENST00000533242 GPATCH4Q5T3I0 446 aaKnown RBP9.39□□□□□ -0.91
NEDD8-207ENST00000533242 ZNF618Q5T7W0 954 aa9.39□□□□□ -0.91
NEDD8-207ENST00000533242 FAM117BQ6P1L5 589 aa9.39□□□□□ -0.91
NEDD8-207ENST00000533242 CKAP2LQ8IYA6 745 aa9.39□□□□□ -0.91
NEDD8-207ENST00000533242 SYTL5Q8TDW5 730 aaPredicted RBP9.39□□□□□ -0.91
NEDD8-207ENST00000533242 SPATA32Q96LK8 384 aa9.39□□□□□ -0.91
NEDD8-207ENST00000533242 C17orf80Q9BSJ5 609 aa9.39□□□□□ -0.91
NEDD8-207ENST00000533242 DDX41Q9UJV9 622 aaKnown RBP9.39□□□□□ -0.91
NEDD8-207ENST00000533242 FAM50BQ9Y247 325 aa9.39□□□□□ -0.91
NEDD8-207ENST00000533242 BRWD1Q9NSI6 2320 aa9.39□□□□□ -0.91
NEDD8-207ENST00000533242 DCXO43602 365 aa9.39□□□□□ -0.91
NEDD8-207ENST00000533242 NR1I2O75469 434 aa9.39□□□□□ -0.91
NEDD8-207ENST00000533242 HOXD8P13378 290 aaPredicted RBP9.39□□□□□ -0.91
NEDD8-207ENST00000533242 GUCY1B3Q02153 619 aa9.39□□□□□ -0.91
NEDD8-207ENST00000533242 CEBPZQ03701 1054 aaKnown RBP9.39□□□□□ -0.91
NEDD8-207ENST00000533242 LAMC2Q13753 1193 aa9.39□□□□□ -0.91
NEDD8-207ENST00000533242 MBTPS1Q14703 1052 aa9.39□□□□□ -0.91
NEDD8-207ENST00000533242 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.39□□□□□ -0.91
NEDD8-207ENST00000533242 MCF2L2Q86YR7 1114 aa9.39□□□□□ -0.91
NEDD8-207ENST00000533242 RAB11FIP4Q86YS3 637 aa9.39□□□□□ -0.91
NEDD8-207ENST00000533242 C17orf53Q8N3J3 647 aaPredicted RBP9.39□□□□□ -0.91
NEDD8-207ENST00000533242 PPTC7Q8NI37 304 aa9.39□□□□□ -0.91
NEDD8-207ENST00000533242 PRKAG3Q9UGI9 489 aa9.39□□□□□ -0.91
NEDD8-207ENST00000533242 REV3LO60673 3130 aa9.39□□□□□ -0.91
NEDD8-207ENST00000533242 POTEB3A0JP26 581 aa9.38□□□□□ -0.91
NEDD8-207ENST00000533242 EIF3JO75822 258 aaKnown RBP9.38□□□□□ -0.91
NEDD8-207ENST00000533242 COL19A1Q14993 1142 aa9.38□□□□□ -0.91
NEDD8-207ENST00000533242 CDC37Q16543 378 aaPredicted RBP9.38□□□□□ -0.91
NEDD8-207ENST00000533242 KIAA0753Q2KHM9 967 aa9.38□□□□□ -0.91
NEDD8-207ENST00000533242 POTEBQ6S5H4 581 aa9.38□□□□□ -0.91
NEDD8-207ENST00000533242 FAM184AQ8NB25 1140 aa9.38□□□□□ -0.91
NEDD8-207ENST00000533242 TBC1D5Q92609 795 aa9.38□□□□□ -0.91
NEDD8-207ENST00000533242 WNT8BQ93098 351 aa9.38□□□□□ -0.91
NEDD8-207ENST00000533242 UIMC1Q96RL1 719 aa9.38□□□□□ -0.91
NEDD8-207ENST00000533242 RMDN3Q96TC7 470 aa9.38□□□□□ -0.91
NEDD8-207ENST00000533242 TTC12Q9H892 705 aaPredicted RBP9.38□□□□□ -0.91
NEDD8-207ENST00000533242 COL20A1Q9P218 1284 aa9.38□□□□□ -0.91
NEDD8-207ENST00000533242 CCDC39Q9UFE4 941 aa9.38□□□□□ -0.91
NEDD8-207ENST00000533242 MRVI1Q9Y6F6 885 aa9.38□□□□□ -0.91
NEDD8-207ENST00000533242 C19orf67A6NJJ6 358 aa9.38□□□□□ -0.91
NEDD8-207ENST00000533242 H3BNC9 293 aa9.38□□□□□ -0.91
NEDD8-207ENST00000533242 KDM4AO75164 1064 aa9.38□□□□□ -0.91
NEDD8-207ENST00000533242 FGAP02671 866 aa9.38□□□□□ -0.91
NEDD8-207ENST00000533242 FDPSP14324 419 aaKnown RBP9.38□□□□□ -0.91
NEDD8-207ENST00000533242 PDIA3P30101 505 aaKnown RBP9.38□□□□□ -0.91
NEDD8-207ENST00000533242 FGD1P98174 961 aa9.38□□□□□ -0.91
NEDD8-207ENST00000533242 EPC2Q52LR7 807 aa9.38□□□□□ -0.91
NEDD8-207ENST00000533242 TICAM2Q86XR7 235 aa9.38□□□□□ -0.91
NEDD8-207ENST00000533242 PABPC5Q96DU9 382 aaKnown RBP9.38□□□□□ -0.91
NEDD8-207ENST00000533242 GJB4Q9NTQ9 266 aa9.38□□□□□ -0.91
NEDD8-207ENST00000533242 MRPL11Q9Y3B7 192 aaKnown RBP9.38□□□□□ -0.91
NEDD8-207ENST00000533242 RSPH10B2B2RC85 870 aa9.37□□□□□ -0.91
NEDD8-207ENST00000533242 LETM1O95202 739 aaPredicted RBP9.37□□□□□ -0.91
NEDD8-207ENST00000533242 RSPH10BP0C881 870 aa9.37□□□□□ -0.91
NEDD8-207ENST00000533242 ZNF286BP0CG31 522 aa9.37□□□□□ -0.91
NEDD8-207ENST00000533242 NT5C2P49902 561 aa9.37□□□□□ -0.91
NEDD8-207ENST00000533242 ANTXR2P58335 489 aa9.37□□□□□ -0.91
NEDD8-207ENST00000533242 PLCB2Q00722 1185 aa9.37□□□□□ -0.91
NEDD8-207ENST00000533242 NHLH1Q02575 133 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms