RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 RTP5Q14D33 572 aa5.93□□□□□ -1.46
CD44-235ENST00000532339 UBXN11Q5T124 520 aa5.93□□□□□ -1.46
CD44-235ENST00000532339 SLC35F1Q5T1Q4 408 aa5.93□□□□□ -1.46
CD44-235ENST00000532339 ANKS3Q6ZW76 656 aa5.93□□□□□ -1.46
CD44-235ENST00000532339 FAM26EQ8N5C1 309 aa5.93□□□□□ -1.46
CD44-235ENST00000532339 TTLL6Q8N841 843 aa5.93□□□□□ -1.46
CD44-235ENST00000532339 KCTD13Q8WZ19 329 aa5.93□□□□□ -1.46
CD44-235ENST00000532339 C1orf159Q96HA4 380 aa5.93□□□□□ -1.46
CD44-235ENST00000532339 BDH2Q9BUT1 245 aa5.93□□□□□ -1.46
CD44-235ENST00000532339 ZNF652Q9Y2D9 606 aa5.93□□□□□ -1.46
CD44-235ENST00000532339 A2ML1A8K2U0 1454 aa5.93□□□□□ -1.46
CD44-235ENST00000532339 MED14O60244 1454 aa5.93□□□□□ -1.46
CD44-235ENST00000532339 NPHP4O75161 1426 aaPredicted RBP5.92□□□□□ -1.46
CD44-235ENST00000532339 FGD6Q6ZV73 1430 aa5.92□□□□□ -1.46
CD44-235ENST00000532339 A0A1W2PQU0 124 aa5.92□□□□□ -1.46
CD44-235ENST00000532339 HGSO14964 777 aaPredicted RBP5.92□□□□□ -1.46
CD44-235ENST00000532339 PRICKLE3O43900 615 aaPredicted RBP5.92□□□□□ -1.46
CD44-235ENST00000532339 LCP1P13796 627 aa5.92□□□□□ -1.46
CD44-235ENST00000532339 RPL13P26373 211 aaKnown RBP5.92□□□□□ -1.46
CD44-235ENST00000532339 DDR2Q16832 855 aa5.92□□□□□ -1.46
CD44-235ENST00000532339 LCE5AQ5TCM9 118 aa5.92□□□□□ -1.46
CD44-235ENST00000532339 STEAP3Q658P3 488 aa5.92□□□□□ -1.46
CD44-235ENST00000532339 DENND5AQ6IQ26 1287 aa5.92□□□□□ -1.46
CD44-235ENST00000532339 PRRT2Q7Z6L0 340 aaPredicted RBP5.92□□□□□ -1.46
CD44-235ENST00000532339 ZNF761Q86XN6 746 aaPredicted RBP5.92□□□□□ -1.46
CD44-235ENST00000532339 FAM9AQ8IZU1 332 aaPredicted RBP5.92□□□□□ -1.46
CD44-235ENST00000532339 ADAMTS17Q8TE56 1095 aa5.92□□□□□ -1.46
CD44-235ENST00000532339 LNPKQ9C0E8 428 aa5.92□□□□□ -1.46
CD44-235ENST00000532339 ST7Q9NRC1 585 aa5.92□□□□□ -1.46
CD44-235ENST00000532339 CLDND1Q9NY35 253 aa5.92□□□□□ -1.46
CD44-235ENST00000532339 FBXL7Q9UJT9 491 aa5.92□□□□□ -1.46
CD44-235ENST00000532339 NPFFR2Q9Y5X5 522 aa5.92□□□□□ -1.46
CD44-235ENST00000532339 DNMT1P26358 1616 aaKnown RBP5.92□□□□□ -1.46
CD44-235ENST00000532339 ROBO1Q9Y6N7 1651 aa5.91□□□□□ -1.46
CD44-235ENST00000532339 KIF27Q86VH2 1401 aa5.91□□□□□ -1.46
CD44-235ENST00000532339 GOLGA3Q08378 1498 aa5.91□□□□□ -1.46
CD44-235ENST00000532339 DGKIO75912 1065 aa5.91□□□□□ -1.46
CD44-235ENST00000532339 ITGA1P56199 1179 aa5.91□□□□□ -1.46
CD44-235ENST00000532339 NKX3-2P78367 333 aa5.91□□□□□ -1.46
CD44-235ENST00000532339 HSP90AA2PQ14568 343 aaPredicted RBP5.91□□□□□ -1.46
CD44-235ENST00000532339 EMC4Q5J8M3 183 aa5.91□□□□□ -1.46
CD44-235ENST00000532339 CELF2-AS1Q8N7Q2 184 aa5.91□□□□□ -1.46
CD44-235ENST00000532339 SGSM3Q96HU1 749 aa5.91□□□□□ -1.46
CD44-235ENST00000532339 KRTAP9-3Q9BYQ3 159 aa5.91□□□□□ -1.46
CD44-235ENST00000532339 KRTAP4-2Q9BYR5 136 aa5.91□□□□□ -1.46
CD44-235ENST00000532339 EPB41L1Q9H4G0 881 aa5.91□□□□□ -1.46
CD44-235ENST00000532339 CNOT11Q9UKZ1 510 aaKnown RBP5.91□□□□□ -1.46
CD44-235ENST00000532339 PCDHB4Q9Y5E5 795 aa5.91□□□□□ -1.46
CD44-235ENST00000532339 NWD1Q149M9 1564 aa5.91□□□□□ -1.46
CD44-235ENST00000532339 AFF2P51816 1311 aa5.91□□□□□ -1.46
CD44-235ENST00000532339 DIP2CQ9Y2E4 1556 aa5.9□□□□□ -1.46
CD44-235ENST00000532339 IQCA1LA6NCM1 817 aa5.9□□□□□ -1.46
CD44-235ENST00000532339 KLF4O43474 513 aa5.9□□□□□ -1.46
CD44-235ENST00000532339 STAT5AP42229 794 aa5.9□□□□□ -1.46
CD44-235ENST00000532339 GRIA2P42262 883 aa5.9□□□□□ -1.46
CD44-235ENST00000532339 CR1LQ2VPA4 569 aa5.9□□□□□ -1.46
CD44-235ENST00000532339 FAM26FQ5R3K3 315 aa5.9□□□□□ -1.46
CD44-235ENST00000532339 FERMT3Q86UX7 667 aa5.9□□□□□ -1.46
CD44-235ENST00000532339 DDX1Q92499 740 aaKnown RBP5.9□□□□□ -1.46
CD44-235ENST00000532339 TOE1Q96GM8 510 aaKnown RBP5.9□□□□□ -1.46
CD44-235ENST00000532339 IER2Q9BTL4 223 aa5.9□□□□□ -1.46
CD44-235ENST00000532339 KRTAP4-11Q9BYQ6 195 aa5.9□□□□□ -1.46
CD44-235ENST00000532339 GPR27Q9NS67 375 aa5.9□□□□□ -1.46
CD44-235ENST00000532339 STRCP1A6NGW2 1772 aa5.9□□□□□ -1.47
CD44-235ENST00000532339 ZNF518AQ6AHZ1 1483 aa5.9□□□□□ -1.47
CD44-235ENST00000532339 LRRC9Q6ZRR7 1453 aa5.9□□□□□ -1.47
CD44-235ENST00000532339 KDM5DQ9BY66 1539 aa5.89□□□□□ -1.47
CD44-235ENST00000532339 KDM5CP41229 1560 aa5.89□□□□□ -1.47
CD44-235ENST00000532339 MAFKO60675 156 aa5.89□□□□□ -1.47
CD44-235ENST00000532339 TADA3O75528 432 aa5.89□□□□□ -1.47
CD44-235ENST00000532339 CNR2P34972 360 aa5.89□□□□□ -1.47
CD44-235ENST00000532339 KIAA2012Q0VF49 1180 aa5.89□□□□□ -1.47
CD44-235ENST00000532339 RGL3Q3MIN7 710 aa5.89□□□□□ -1.47
CD44-235ENST00000532339 SPATS1Q496A3 300 aa5.89□□□□□ -1.47
CD44-235ENST00000532339 STK32CQ86UX6 486 aa5.89□□□□□ -1.47
CD44-235ENST00000532339 PHOSPHO1Q8TCT1 267 aa5.89□□□□□ -1.47
CD44-235ENST00000532339 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.89□□□□□ -1.47
CD44-235ENST00000532339 SYT3Q9BQG1 590 aa5.89□□□□□ -1.47
CD44-235ENST00000532339 DTLQ9NZJ0 730 aa5.89□□□□□ -1.47
CD44-235ENST00000532339 DUSP10Q9Y6W6 482 aa5.89□□□□□ -1.47
CD44-235ENST00000532339 BCL9LQ86UU0 1499 aa5.89□□□□□ -1.47
CD44-235ENST00000532339 TCRBV5S2A0A599 114 aa5.88□□□□□ -1.47
CD44-235ENST00000532339 K7ESM1 405 aa5.88□□□□□ -1.47
CD44-235ENST00000532339 KRIT1O00522 736 aa5.88□□□□□ -1.47
CD44-235ENST00000532339 DLX3O60479 287 aa5.88□□□□□ -1.47
CD44-235ENST00000532339 IGSF3O75054 1194 aa5.88□□□□□ -1.47
CD44-235ENST00000532339 EFEMP1Q12805 493 aa5.88□□□□□ -1.47
CD44-235ENST00000532339 RSPO2Q6UXX9 243 aaPredicted RBP5.88□□□□□ -1.47
CD44-235ENST00000532339 DBX2Q6ZNG2 339 aa5.88□□□□□ -1.47
CD44-235ENST00000532339 USP53Q70EK8 1073 aa5.88□□□□□ -1.47
CD44-235ENST00000532339 FAM124AQ86V42 546 aa5.88□□□□□ -1.47
CD44-235ENST00000532339 ARRDC4Q8NCT1 418 aa5.88□□□□□ -1.47
CD44-235ENST00000532339 ST13P5Q8NFI4 369 aaPredicted RBP5.88□□□□□ -1.47
CD44-235ENST00000532339 AARSD1Q9BTE6 412 aaKnown RBP5.88□□□□□ -1.47
CD44-235ENST00000532339 SMOC1Q9H4F8 434 aa5.88□□□□□ -1.47
CD44-235ENST00000532339 MYOTQ9UBF9 498 aa5.88□□□□□ -1.47
CD44-235ENST00000532339 DEPDC5O75140 1603 aa5.88□□□□□ -1.47
CD44-235ENST00000532339 PHLPP1O60346 1717 aa5.88□□□□□ -1.47
CD44-235ENST00000532339 ADRB1P08588 477 aa5.87□□□□□ -1.47
CD44-235ENST00000532339 RAB33AQ14088 237 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms