RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 LRRC14Q15048 493 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 UBE3CQ15386 1083 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 GRIK5Q16478 980 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 PPP2R5EQ16537 467 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 STYK1Q6J9G0 422 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 ADAMTSL4Q6UY14 1074 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 STOX1Q6ZVD7 989 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 HFE2Q6ZVN8 426 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 VN1R5Q7Z5H4 357 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 SULF2Q8IWU5 870 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 LCORLQ8N3X6 602 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 MIGA1Q8NAN2 632 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 ST13P5Q8NFI4 369 aaPredicted RBP4.88□□□□□ -1.63
CD44-226ENST00000527889 TDRD7Q8NHU6 1098 aaKnown RBP4.88□□□□□ -1.63
CD44-226ENST00000527889 ZNF384Q8TF68 577 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 BSNDQ8WZ55 320 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 IL17RAQ96F46 866 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 DSCC1Q9BVC3 393 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 ARMT1Q9H993 441 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 CD209Q9NNX6 404 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 PRDM6Q9NQX0 595 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 PFDN2Q9UHV9 154 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 ZMYM5Q9UJ78 669 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 SOX13Q9UN79 622 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 PCDHB14Q9Y5E9 798 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 SNED1Q8TER0 1413 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 MYH11P35749 1972 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 UPK3BL1B0FP48 263 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 UPK3BL2E5RIL1 263 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 OIP5O43482 229 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 PRKAB2O43741 272 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 DDAH1O94760 285 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 APPP05067 770 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 HSP90AA1P07900 732 aaKnown RBP4.87□□□□□ -1.63
CD44-226ENST00000527889 PDGFRBP09619 1106 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 BCRP11274 1271 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 DPEP1P16444 411 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 ZKSCAN1P17029 563 aaPredicted RBP4.87□□□□□ -1.63
CD44-226ENST00000527889 AK2P54819 239 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 PCBP4P57723 403 aaKnown RBP4.87□□□□□ -1.63
CD44-226ENST00000527889 MECOMQ03112 1051 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 SSRP1Q08945 709 aaKnown RBP4.87□□□□□ -1.63
CD44-226ENST00000527889 TCEA2Q15560 299 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 DALRD3Q5D0E6 543 aaKnown RBP4.87□□□□□ -1.63
CD44-226ENST00000527889 MRM1Q6IN84 353 aaKnown RBP4.87□□□□□ -1.63
CD44-226ENST00000527889 NAA16Q6N069 864 aaPredicted RBP4.87□□□□□ -1.63
CD44-226ENST00000527889 BLOC1S2Q6QNY1 142 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 C6orf15Q6UXA7 325 aaPredicted RBP4.87□□□□□ -1.63
CD44-226ENST00000527889 DPP8Q6V1X1 898 aaPredicted RBP4.87□□□□□ -1.63
CD44-226ENST00000527889 C15orf52Q6ZUT6 534 aaKnown RBP4.87□□□□□ -1.63
CD44-226ENST00000527889 KRT26Q7Z3Y9 468 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 TTC6Q86TZ1 520 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 FCHSD1Q86WN1 690 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 FAM178BQ8IXR5 827 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 SYNPOQ8N3V7 929 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 ZNF669Q96BR6 464 aaPredicted RBP4.87□□□□□ -1.63
CD44-226ENST00000527889 NSUN4Q96CB9 384 aaKnown RBP4.87□□□□□ -1.63
CD44-226ENST00000527889 TTC14Q96N46 770 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 STRBPQ96SI9 672 aaKnown RBP4.87□□□□□ -1.63
CD44-226ENST00000527889 MXD3Q9BW11 206 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 EMILIN2Q9BXX0 1053 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 LRRC2Q9BYS8 371 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 EPB41L4AQ9HCS5 686 aaPredicted RBP4.87□□□□□ -1.63
CD44-226ENST00000527889 PDRG1Q9NUG6 133 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 TYW1Q9NV66 732 aaKnown RBP4.87□□□□□ -1.63
CD44-226ENST00000527889 AATFQ9NY61 560 aaKnown RBP eCLIP4.87□□□□□ -1.63
CD44-226ENST00000527889 CYP46A1Q9Y6A2 500 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 PHIPQ8WWQ0 1821 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 PDS5AQ29RF7 1337 aaKnown RBP4.87□□□□□ -1.63
CD44-226ENST00000527889 MYH9P35579 1960 aaKnown RBP4.87□□□□□ -1.63
CD44-226ENST00000527889 OTOFQ9HC10 1997 aa4.87□□□□□ -1.63
CD44-226ENST00000527889 DOCK1Q14185 1865 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 MEIS3P2A8K0S8 358 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 GSG1L2A8MUP6 293 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 E7EWF7 191 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 DTNBO60941 627 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 LARGE1O95461 756 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 ASMTLO95671 621 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 GHRHP01286 108 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 FGAP02671 866 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 S100BP04271 92 aaPredicted RBP4.86□□□□□ -1.63
CD44-226ENST00000527889 ARAFP10398 606 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 IL1R1P14778 569 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 SELPP16109 830 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 RPS6KB1P23443 525 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 PSMA5P28066 241 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 TDO2P48775 406 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 FAM193AP78312 1265 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 ZNF468Q5VIY5 522 aaPredicted RBP4.86□□□□□ -1.63
CD44-226ENST00000527889 CEP135Q66GS9 1140 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 SCARA3Q6AZY7 606 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 PDZRN4Q6ZMN7 1036 aaPredicted RBP4.86□□□□□ -1.63
CD44-226ENST00000527889 SLCO4C1Q6ZQN7 724 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 RUFY3Q7L099 469 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 PDZD3Q86UT5 571 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 DZIP1Q86YF9 867 aaKnown RBP4.86□□□□□ -1.63
CD44-226ENST00000527889 TBC1D10CQ8IV04 446 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 STK11IPQ8N1F8 1099 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 TMTC2Q8N394 836 aa4.86□□□□□ -1.63
CD44-226ENST00000527889 ZGPATQ8N5A5 531 aaKnown RBP4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms