RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 TTLL3Q9Y4R7 772 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 COMMD3-BMI1R4GMX3 469 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 MYH15Q9Y2K3 1946 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 CDC42BPBQ9Y5S2 1711 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 INO80Q9ULG1 1556 aaPredicted RBP6.36□□□□□ -1.39
CD44-225ENST00000527326 AGLP35573 1532 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 PLCH2O75038 1416 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 SBNO1A3KN83 1393 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 ABCC12Q96J65 1359 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 PHF20L1A8MW92 1017 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 EIF3FO00303 357 aaPredicted RBP6.36□□□□□ -1.39
CD44-225ENST00000527326 TTI1O43156 1089 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 HIP1RO75146 1068 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 TRIM37O94972 964 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 LARGE1O95461 756 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 THBS1P07996 1170 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 U2AF1L5P0DN76 240 aaPredicted RBP6.36□□□□□ -1.39
CD44-225ENST00000527326 NQO1P15559 274 aaKnown RBP6.36□□□□□ -1.39
CD44-225ENST00000527326 PSMA5P28066 241 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 CA8P35219 290 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 PCK1P35558 622 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 MAP2K3P46734 347 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 ACADVLP49748 655 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 ATP1A2P50993 1020 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 BPIFB4P59827 614 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 PDE1BQ01064 536 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 U2AF1Q01081 240 aaKnown RBP eCLIP6.36□□□□□ -1.39
CD44-225ENST00000527326 GUCY1A3Q02108 690 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 NSUN2Q08J23 767 aaKnown RBP eCLIP6.36□□□□□ -1.39
CD44-225ENST00000527326 PAK2Q13177 524 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 MTX1Q13505 466 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 ELOAQ14241 798 aaKnown RBP6.36□□□□□ -1.39
CD44-225ENST00000527326 TLR1Q15399 786 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 DPCR1Q3MIW9 517 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 CCDC152Q4G0S7 254 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 TMEM53Q6P2H8 277 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 KLC3Q6P597 504 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 OLFM4Q6UX06 510 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 PACS1Q6VY07 963 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 RUFY4Q6ZNE9 571 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 SAPCD2Q86UD0 394 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 FERMT3Q86UX7 667 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 PNMA8AQ86V59 439 aaPredicted RBP6.36□□□□□ -1.39
CD44-225ENST00000527326 SLC15A3Q8IY34 581 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 MMGT1Q8N4V1 131 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 MREGQ8N565 214 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 FSIP1Q8NA03 581 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 CCDC197Q8NCU1 140 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 WDR60Q8WVS4 1066 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 NACC2Q96BF6 587 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 ARL8AQ96BM9 186 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 HAPLN3Q96S86 360 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 CDC5LQ99459 802 aaKnown RBP6.36□□□□□ -1.39
CD44-225ENST00000527326 CGREF1Q99674 301 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 SDF4Q9BRK5 362 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 CARD9Q9H257 536 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 PIDD1Q9HB75 910 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 KCNMB3Q9NPA1 279 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 LZTFL1Q9NQ48 299 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 UBAP1Q9NZ09 502 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 DKK3Q9UBP4 350 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 R3HDM2Q9Y2K5 976 aaKnown RBP6.36□□□□□ -1.39
CD44-225ENST00000527326 SIGLEC1Q9BZZ2 1709 aa6.36□□□□□ -1.39
CD44-225ENST00000527326 HTR3EA5X5Y0 456 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 USP17L3A6NCW0 530 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 USP17L4A6NCW7 530 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 PSMD14O00487 310 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 HNRNPCP07910 306 aaKnown RBP eCLIP6.35□□□□□ -1.39
CD44-225ENST00000527326 SLC3A2P08195 630 aaKnown RBP6.35□□□□□ -1.39
CD44-225ENST00000527326 PDGFRBP09619 1106 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 MSL3P1P0C860 447 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 CPA3P15088 417 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 KCNA2P16389 499 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 EIF2S2P20042 333 aaKnown RBP6.35□□□□□ -1.39
CD44-225ENST00000527326 S100A1P23297 94 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 CDC25CP30307 473 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 GSTT1P30711 240 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 CASP14P31944 242 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 TCF7P36402 384 aaPredicted RBP6.35□□□□□ -1.39
CD44-225ENST00000527326 HNRNPMP52272 730 aaKnown RBP eCLIP6.35□□□□□ -1.39
CD44-225ENST00000527326 VAV2P52735 878 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 GPSM2P81274 684 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 GSTM4Q03013 218 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 ST3GAL1Q11201 340 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 MAP3K12Q12852 859 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 ITGB3BPQ13352 177 aaPredicted RBP6.35□□□□□ -1.39
CD44-225ENST00000527326 LSAMPQ13449 338 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 BIRC3Q13489 604 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 CCDC153Q494R4 210 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 EFHC2Q5JST6 749 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 EFCAB2Q5VUJ9 269 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 PAPD7Q5XG87 772 aaKnown RBP6.35□□□□□ -1.39
CD44-225ENST00000527326 FAAH2Q6GMR7 532 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 OR52E8Q6IFG1 317 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 PHLDB3Q6NSJ2 640 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 USP17L2Q6R6M4 530 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 LRIG3Q6UXM1 1119 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 CCDC129Q6ZRS4 1044 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 USP17L1Q7RTZ2 530 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 ZNF572Q7Z3I7 529 aaPredicted RBP6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms