RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 SRGAP2CP0DJJ0 459 aa3.63□□□□□ -1.83
CD44-216ENST00000525293 RASA3Q14644 834 aa3.63□□□□□ -1.83
CD44-216ENST00000525293 TRMT10BQ6PF06 316 aaKnown RBP3.63□□□□□ -1.83
CD44-216ENST00000525293 BORAQ6PGQ7 559 aa3.63□□□□□ -1.83
CD44-216ENST00000525293 ARHGAP36Q6ZRI8 547 aa3.63□□□□□ -1.83
CD44-216ENST00000525293 LRP10Q7Z4F1 713 aa3.63□□□□□ -1.83
CD44-216ENST00000525293 LGI4Q8N135 537 aa3.63□□□□□ -1.83
CD44-216ENST00000525293 PCDH19Q8TAB3 1148 aa3.63□□□□□ -1.83
CD44-216ENST00000525293 ZCCHC14Q8WYQ9 949 aaKnown RBP3.63□□□□□ -1.83
CD44-216ENST00000525293 YTHDC1Q96MU7 727 aaKnown RBP3.63□□□□□ -1.83
CD44-216ENST00000525293 WRNIP1Q96S55 665 aa3.63□□□□□ -1.83
CD44-216ENST00000525293 SRPK1Q96SB4 655 aaKnown RBP3.63□□□□□ -1.83
CD44-216ENST00000525293 DNAJC7Q99615 494 aa3.63□□□□□ -1.83
CD44-216ENST00000525293 CD244Q9BZW8 370 aa3.63□□□□□ -1.83
CD44-216ENST00000525293 TMEM168Q9H0V1 697 aa3.63□□□□□ -1.83
CD44-216ENST00000525293 CATSPERZQ9NTU4 200 aa3.63□□□□□ -1.83
CD44-216ENST00000525293 SNTG2Q9NY99 539 aa3.63□□□□□ -1.83
CD44-216ENST00000525293 FTSJ1Q9UET6 329 aa3.63□□□□□ -1.83
CD44-216ENST00000525293 INVSQ9Y283 1065 aa3.63□□□□□ -1.83
CD44-216ENST00000525293 ZDHHC9Q9Y397 364 aa3.63□□□□□ -1.83
CD44-216ENST00000525293 MRPS23Q9Y3D9 190 aaKnown RBP3.63□□□□□ -1.83
CD44-216ENST00000525293 C9orf118A6NHY6 69 aa3.62□□□□□ -1.83
CD44-216ENST00000525293 FBXO21O94952 628 aa3.62□□□□□ -1.83
CD44-216ENST00000525293 CRTAMO95727 393 aa3.62□□□□□ -1.83
CD44-216ENST00000525293 PLATP00750 562 aa3.62□□□□□ -1.83
CD44-216ENST00000525293 ENO2P09104 434 aaPredicted RBP3.62□□□□□ -1.83
CD44-216ENST00000525293 PYGMP11217 842 aa3.62□□□□□ -1.83
CD44-216ENST00000525293 PDE6AP16499 860 aa3.62□□□□□ -1.83
CD44-216ENST00000525293 KRT15P19012 456 aa3.62□□□□□ -1.83
CD44-216ENST00000525293 GLRBP48167 497 aa3.62□□□□□ -1.83
CD44-216ENST00000525293 EPHA5P54756 1037 aa3.62□□□□□ -1.83
CD44-216ENST00000525293 GABREP78334 506 aa3.62□□□□□ -1.83
CD44-216ENST00000525293 PFKPQ01813 784 aa3.62□□□□□ -1.83
CD44-216ENST00000525293 LONRF2Q1L5Z9 754 aa3.62□□□□□ -1.83
CD44-216ENST00000525293 SKIDA1Q1XH10 827 aa3.62□□□□□ -1.83
CD44-216ENST00000525293 TBC1D10BQ4KMP7 808 aaPredicted RBP3.62□□□□□ -1.83
CD44-216ENST00000525293 SOGA3Q5TF21 947 aa3.62□□□□□ -1.83
CD44-216ENST00000525293 CD276Q5ZPR3 534 aa3.62□□□□□ -1.83
CD44-216ENST00000525293 OSTM1Q86WC4 334 aa3.62□□□□□ -1.83
CD44-216ENST00000525293 DTX3Q8N9I9 347 aa3.62□□□□□ -1.83
CD44-216ENST00000525293 KISS1RQ969F8 398 aaPredicted RBP3.62□□□□□ -1.83
CD44-216ENST00000525293 FBXW5Q969U6 566 aa3.62□□□□□ -1.83
CD44-216ENST00000525293 DLL4Q9NR61 685 aa3.62□□□□□ -1.83
CD44-216ENST00000525293 ZNF536O15090 1300 aa3.62□□□□□ -1.83
CD44-216ENST00000525293 FAM90A27PA6NNH2 459 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 WNT9AO14904 365 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 B4GALT3O60512 393 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 B4GALT4O60513 344 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 AMY2AP04746 511 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 ITGB3P05106 788 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 NAT1P18440 290 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 AMY2BP19961 511 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 ST5P78524 1137 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 NFKB2Q00653 900 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 EFEMP1Q12805 493 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 NFATC3Q12968 1075 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 SF3A1Q15459 793 aaKnown RBP3.61□□□□□ -1.83
CD44-216ENST00000525293 GPR19Q15760 415 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 SMAD2Q15796 467 aaKnown RBP3.61□□□□□ -1.83
CD44-216ENST00000525293 SPATS1Q496A3 300 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 BTBD8Q5XKL5 378 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 EP400NLQ6ZTU2 488 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 C16orf59Q7L2K0 433 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 PTRH1Q86Y79 214 aaKnown RBP3.61□□□□□ -1.83
CD44-216ENST00000525293 ZC3H7AQ8IWR0 971 aaKnown RBP3.61□□□□□ -1.83
CD44-216ENST00000525293 NLGN4XQ8N0W4 816 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 STPG3Q8N7X2 389 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 NUDT10Q8NFP7 164 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 MBD6Q96DN6 1003 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 NUDT11Q96G61 164 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 RBM15Q96T37 977 aaKnown RBP eCLIP3.61□□□□□ -1.83
CD44-216ENST00000525293 PDGFDQ9GZP0 370 aaPredicted RBP3.61□□□□□ -1.83
CD44-216ENST00000525293 SLC39A2Q9NP94 309 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 RIC8BQ9NVN3 520 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 ARHGAP20Q9P2F6 1191 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 NDOR1Q9UHB4 597 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 ZFP69BQ9UJL9 534 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 CBLCQ9ULV8 474 aa3.61□□□□□ -1.83
CD44-216ENST00000525293 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP3.6□□□□□ -1.83
CD44-216ENST00000525293 LOC101059915A0A1B0GWI6 518 aaPredicted RBP3.6□□□□□ -1.83
CD44-216ENST00000525293 ZNF839A8K0R7 811 aa3.6□□□□□ -1.83
CD44-216ENST00000525293 ARVCFO00192 962 aa3.6□□□□□ -1.83
CD44-216ENST00000525293 MAN2B1O00754 1011 aa3.6□□□□□ -1.83
CD44-216ENST00000525293 KCNK3O14649 394 aa3.6□□□□□ -1.83
CD44-216ENST00000525293 GSTA4O15217 222 aa3.6□□□□□ -1.83
CD44-216ENST00000525293 IL18BPO95998 194 aa3.6□□□□□ -1.83
CD44-216ENST00000525293 ADRB1P08588 477 aa3.6□□□□□ -1.83
CD44-216ENST00000525293 COL6A1P12109 1028 aa3.6□□□□□ -1.83
CD44-216ENST00000525293 PTPN1P18031 435 aaKnown RBP3.6□□□□□ -1.83
CD44-216ENST00000525293 DNM2P50570 870 aa3.6□□□□□ -1.83
CD44-216ENST00000525293 JAM2P57087 298 aa3.6□□□□□ -1.83
CD44-216ENST00000525293 KRTAP10-2P60368 255 aa3.6□□□□□ -1.83
CD44-216ENST00000525293 DBPQ10586 325 aaPredicted RBP3.6□□□□□ -1.83
CD44-216ENST00000525293 CRY1Q16526 586 aa3.6□□□□□ -1.83
CD44-216ENST00000525293 ZNF827Q17R98 1081 aa3.6□□□□□ -1.83
CD44-216ENST00000525293 ZC3H12BQ5HYM0 836 aaKnown RBP3.6□□□□□ -1.83
CD44-216ENST00000525293 HHIPL2Q6UWX4 724 aa3.6□□□□□ -1.83
CD44-216ENST00000525293 LIMS2Q7Z4I7 341 aa3.6□□□□□ -1.83
CD44-216ENST00000525293 NPM2Q86SE8 214 aaKnown RBP3.6□□□□□ -1.83
CD44-216ENST00000525293 KBTBD2Q8IY47 623 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms