RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 PDIA6Q15084 440 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 RTKN2Q8IZC4 609 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 ANKRD13CQ8N6S4 541 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 RAB17Q9H0T7 212 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 SEPT9Q9UHD8 586 aaPredicted RBP14.28□□□□□ -0.12
TCOF1-213ENST00000514442 MROH2AA6NES4 1674 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 CTNND1O60716 968 aaKnown RBP14.28□□□□□ -0.12
TCOF1-213ENST00000514442 PFDN1O60925 122 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 TAF12Q16514 161 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 AK8Q96MA6 479 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 SMC6Q96SB8 1091 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 RNF14Q9UBS8 474 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 MROH7-TTC4A0A0A0MT08 1334 aa14.27□□□□□ -0.12
TCOF1-213ENST00000514442 CAMTA2O94983 1202 aa14.27□□□□□ -0.12
TCOF1-213ENST00000514442 DMP1Q13316 513 aaPredicted RBP14.27□□□□□ -0.12
TCOF1-213ENST00000514442 FAM47CQ5HY64 1035 aa14.27□□□□□ -0.12
TCOF1-213ENST00000514442 IWS1Q96ST2 819 aa14.27□□□□□ -0.12
TCOF1-213ENST00000514442 ZNF341Q9BYN7 854 aa14.27□□□□□ -0.12
TCOF1-213ENST00000514442 PNMA6FA0A0J9YX94 578 aa14.27□□□□□ -0.13
TCOF1-213ENST00000514442 ANO9A1A5B4 782 aa14.27□□□□□ -0.13
TCOF1-213ENST00000514442 ITPK1Q13572 414 aa14.27□□□□□ -0.13
TCOF1-213ENST00000514442 PDCD2Q16342 344 aaPredicted RBP14.27□□□□□ -0.13
TCOF1-213ENST00000514442 GLE1Q53GS7 698 aaKnown RBP14.27□□□□□ -0.13
TCOF1-213ENST00000514442 EEPD1Q7L9B9 569 aa14.27□□□□□ -0.13
TCOF1-213ENST00000514442 RUBCNQ92622 972 aa14.27□□□□□ -0.13
TCOF1-213ENST00000514442 ENO4A6NNW6 628 aa14.27□□□□□ -0.13
TCOF1-213ENST00000514442 CASP1P29466 404 aa14.27□□□□□ -0.13
TCOF1-213ENST00000514442 SLC8A3P57103 927 aa14.27□□□□□ -0.13
TCOF1-213ENST00000514442 MKRN3Q13064 507 aaKnown RBP14.27□□□□□ -0.13
TCOF1-213ENST00000514442 PPM1KQ8N3J5 372 aa14.27□□□□□ -0.13
TCOF1-213ENST00000514442 MCUR1Q96AQ8 359 aa14.27□□□□□ -0.13
TCOF1-213ENST00000514442 CEP95Q96GE4 821 aa14.27□□□□□ -0.13
TCOF1-213ENST00000514442 DDX27Q96GQ7 796 aaKnown RBP14.27□□□□□ -0.13
TCOF1-213ENST00000514442 PAGE5Q96GU1 130 aa14.27□□□□□ -0.13
TCOF1-213ENST00000514442 ABHD10Q9NUJ1 306 aa14.27□□□□□ -0.13
TCOF1-213ENST00000514442 SCOCQ9UIL1 159 aa14.27□□□□□ -0.13
TCOF1-213ENST00000514442 CLIC2O15247 247 aa14.27□□□□□ -0.13
TCOF1-213ENST00000514442 CREB3O43889 395 aa14.27□□□□□ -0.13
TCOF1-213ENST00000514442 NR2F2P24468 414 aa14.27□□□□□ -0.13
TCOF1-213ENST00000514442 RANBP1P43487 201 aa14.27□□□□□ -0.13
TCOF1-213ENST00000514442 RESP18Q5W5W9 173 aa14.27□□□□□ -0.13
TCOF1-213ENST00000514442 MGARPQ8TDB4 240 aa14.27□□□□□ -0.13
TCOF1-213ENST00000514442 RNF34Q969K3 372 aa14.27□□□□□ -0.13
TCOF1-213ENST00000514442 THOC1Q96FV9 657 aaKnown RBP14.27□□□□□ -0.13
TCOF1-213ENST00000514442 ZNF277Q9NRM2 450 aaPredicted RBP14.27□□□□□ -0.13
TCOF1-213ENST00000514442 INTS9Q9NV88 658 aaKnown RBP14.27□□□□□ -0.13
TCOF1-213ENST00000514442 NFU1Q9UMS0 254 aa14.27□□□□□ -0.13
TCOF1-213ENST00000514442 KIAA1210Q9ULL0 1709 aa14.26□□□□□ -0.13
TCOF1-213ENST00000514442 PPP1R37O75864 691 aa14.26□□□□□ -0.13
TCOF1-213ENST00000514442 ZNF131P52739 623 aa14.26□□□□□ -0.13
TCOF1-213ENST00000514442 GUCY1A3Q02108 690 aa14.26□□□□□ -0.13
TCOF1-213ENST00000514442 EN1Q05925 392 aaPredicted RBP14.26□□□□□ -0.13
TCOF1-213ENST00000514442 UAP1Q16222 522 aaPredicted RBP14.26□□□□□ -0.13
TCOF1-213ENST00000514442 FOXP4Q8IVH2 680 aaPredicted RBP14.26□□□□□ -0.13
TCOF1-213ENST00000514442 ZNF34Q8IZ26 560 aa14.26□□□□□ -0.13
TCOF1-213ENST00000514442 P2RX5Q93086 422 aa14.26□□□□□ -0.13
TCOF1-213ENST00000514442 PLAAQ9Y263 795 aa14.26□□□□□ -0.13
TCOF1-213ENST00000514442 JCADQ9P266 1359 aa14.26□□□□□ -0.13
TCOF1-213ENST00000514442 ZNF609O15014 1411 aa14.26□□□□□ -0.13
TCOF1-213ENST00000514442 PPM1FP49593 454 aaPredicted RBP14.26□□□□□ -0.13
TCOF1-213ENST00000514442 SEPT6Q14141 434 aa14.26□□□□□ -0.13
TCOF1-213ENST00000514442 FYB2Q5VWT5 728 aa14.26□□□□□ -0.13
TCOF1-213ENST00000514442 CALR3Q96L12 384 aaKnown RBP14.26□□□□□ -0.13
TCOF1-213ENST00000514442 CUEDC2Q9H467 287 aa14.26□□□□□ -0.13
TCOF1-213ENST00000514442 MAGEF1Q9HAY2 307 aa14.26□□□□□ -0.13
TCOF1-213ENST00000514442 RWDD2BP57060 319 aa14.26□□□□□ -0.13
TCOF1-213ENST00000514442 ZNF658Q5TYW1 1059 aaPredicted RBP14.26□□□□□ -0.13
TCOF1-213ENST00000514442 ZBTB8OSQ8IWT0 167 aa14.26□□□□□ -0.13
TCOF1-213ENST00000514442 NOVA2Q9UNW9 492 aaKnown RBP14.26□□□□□ -0.13
TCOF1-213ENST00000514442 hCG_1984214I3L0E3 225 aa14.26□□□□□ -0.13
TCOF1-213ENST00000514442 DYNC1I2Q13409 638 aaKnown RBP14.26□□□□□ -0.13
TCOF1-213ENST00000514442 KCTD2Q14681 263 aa14.26□□□□□ -0.13
TCOF1-213ENST00000514442 ZNF713Q8N859 430 aaPredicted RBP14.26□□□□□ -0.13
TCOF1-213ENST00000514442 RNF169Q8NCN4 708 aa14.26□□□□□ -0.13
TCOF1-213ENST00000514442 ATP6V1G3Q96LB4 118 aa14.26□□□□□ -0.13
TCOF1-213ENST00000514442 ANO3Q9BYT9 981 aa14.26□□□□□ -0.13
TCOF1-213ENST00000514442 RFX7Q2KHR2 1363 aa14.25□□□□□ -0.13
TCOF1-213ENST00000514442 RIMS1Q86UR5 1692 aaKnown RBP14.25□□□□□ -0.13
TCOF1-213ENST00000514442 KCNK3O14649 394 aa14.25□□□□□ -0.13
TCOF1-213ENST00000514442 EIF2AK2P19525 551 aaKnown RBP14.25□□□□□ -0.13
TCOF1-213ENST00000514442 CHRNA5P30532 468 aa14.25□□□□□ -0.13
TCOF1-213ENST00000514442 PLA2G12BQ9BX93 195 aa14.25□□□□□ -0.13
TCOF1-213ENST00000514442 PIM2Q9P1W9 311 aa14.25□□□□□ -0.13
TCOF1-213ENST00000514442 HDAC6Q9UBN7 1215 aa14.25□□□□□ -0.13
TCOF1-213ENST00000514442 FRMPD1Q5SYB0 1578 aa14.25□□□□□ -0.13
TCOF1-213ENST00000514442 LRRIQ3A6PVS8 624 aaPredicted RBP14.25□□□□□ -0.13
TCOF1-213ENST00000514442 SLC27A3Q5K4L6 730 aa14.25□□□□□ -0.13
TCOF1-213ENST00000514442 SLC30A9Q6PML9 568 aa14.25□□□□□ -0.13
TCOF1-213ENST00000514442 TMEM179Q6ZVK1 233 aa14.25□□□□□ -0.13
TCOF1-213ENST00000514442 POMGNT1Q8WZA1 660 aa14.25□□□□□ -0.13
TCOF1-213ENST00000514442 CCT8L2Q96SF2 557 aa14.25□□□□□ -0.13
TCOF1-213ENST00000514442 ASIC3Q9UHC3 531 aa14.25□□□□□ -0.13
TCOF1-213ENST00000514442 MAP2K7O14733 419 aa14.25□□□□□ -0.13
TCOF1-213ENST00000514442 CNGA1P29973 690 aa14.25□□□□□ -0.13
TCOF1-213ENST00000514442 HSPA1LP34931 641 aa14.25□□□□□ -0.13
TCOF1-213ENST00000514442 VPS72Q15906 364 aa14.25□□□□□ -0.13
TCOF1-213ENST00000514442 CCNI2Q6ZMN8 369 aaPredicted RBP14.25□□□□□ -0.13
TCOF1-213ENST00000514442 PHLDB2Q86SQ0 1253 aa14.25□□□□□ -0.13
TCOF1-213ENST00000514442 TC2NQ8N9U0 490 aa14.25□□□□□ -0.13
TCOF1-213ENST00000514442 CFAP73A6NFT4 308 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms