RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 LRCH2Q5VUJ6 765 aa11.09□□□□□ -0.63
TOPBP1-209ENST00000513818 PPP4R3AQ6IN85 833 aa11.09□□□□□ -0.63
TOPBP1-209ENST00000513818 CCSAPQ6IQ19 270 aaPredicted RBP11.09□□□□□ -0.63
TOPBP1-209ENST00000513818 MOXD1Q6UVY6 613 aa11.09□□□□□ -0.63
TOPBP1-209ENST00000513818 ARRDC4Q8NCT1 418 aa11.09□□□□□ -0.63
TOPBP1-209ENST00000513818 SLC5A5Q92911 643 aa11.09□□□□□ -0.63
TOPBP1-209ENST00000513818 GPR20Q99678 358 aa11.09□□□□□ -0.63
TOPBP1-209ENST00000513818 SENP7Q9BQF6 1050 aa11.09□□□□□ -0.63
TOPBP1-209ENST00000513818 UNC45AQ9H3U1 944 aa11.09□□□□□ -0.63
TOPBP1-209ENST00000513818 SLC24A3Q9HC58 644 aa11.09□□□□□ -0.63
TOPBP1-209ENST00000513818 KCNMB3Q9NPA1 279 aa11.09□□□□□ -0.63
TOPBP1-209ENST00000513818 SLC9A2Q9UBY0 812 aa11.09□□□□□ -0.63
TOPBP1-209ENST00000513818 NFASCO94856 1347 aa11.09□□□□□ -0.63
TOPBP1-209ENST00000513818 GSTTP1A0A1W2PQM5 241 aa11.08□□□□□ -0.64
TOPBP1-209ENST00000513818 A6NJR5 290 aa11.08□□□□□ -0.64
TOPBP1-209ENST00000513818 RBAK-RBAKDNI3L0D1 243 aa11.08□□□□□ -0.64
TOPBP1-209ENST00000513818 MARCH6O60337 910 aa11.08□□□□□ -0.64
TOPBP1-209ENST00000513818 F13A1P00488 732 aa11.08□□□□□ -0.64
TOPBP1-209ENST00000513818 ZSCAN22P10073 491 aaPredicted RBP11.08□□□□□ -0.64
TOPBP1-209ENST00000513818 CST5P28325 142 aaPredicted RBP11.08□□□□□ -0.64
TOPBP1-209ENST00000513818 TCF7P36402 384 aaPredicted RBP11.08□□□□□ -0.64
TOPBP1-209ENST00000513818 ACTR2P61160 394 aa11.08□□□□□ -0.64
TOPBP1-209ENST00000513818 CEBPZQ03701 1054 aaKnown RBP11.08□□□□□ -0.64
TOPBP1-209ENST00000513818 PPTC7Q8NI37 304 aa11.08□□□□□ -0.64
TOPBP1-209ENST00000513818 HAS1Q92839 578 aa11.08□□□□□ -0.64
TOPBP1-209ENST00000513818 EMID1Q96A84 441 aaPredicted RBP11.08□□□□□ -0.64
TOPBP1-209ENST00000513818 TEKT3Q9BXF9 490 aa11.08□□□□□ -0.64
TOPBP1-209ENST00000513818 SENP6Q9GZR1 1112 aaPredicted RBP11.08□□□□□ -0.64
TOPBP1-209ENST00000513818 C11orf49Q9H6J7 331 aa11.08□□□□□ -0.64
TOPBP1-209ENST00000513818 VAV3Q9UKW4 847 aa11.08□□□□□ -0.64
TOPBP1-209ENST00000513818 ZDHHC9Q9Y397 364 aa11.08□□□□□ -0.64
TOPBP1-209ENST00000513818 Q9Y3F1 56 aa11.08□□□□□ -0.64
TOPBP1-209ENST00000513818 ELP1O95163 1332 aa11.08□□□□□ -0.64
TOPBP1-209ENST00000513818 PSMD10O75832 226 aa11.07□□□□□ -0.64
TOPBP1-209ENST00000513818 LGALS2P05162 132 aa11.07□□□□□ -0.64
TOPBP1-209ENST00000513818 OR52Z1P0C646 297 aa11.07□□□□□ -0.64
TOPBP1-209ENST00000513818 COL6A1P12109 1028 aa11.07□□□□□ -0.64
TOPBP1-209ENST00000513818 MARK3P27448 753 aa11.07□□□□□ -0.64
TOPBP1-209ENST00000513818 TXKP42681 527 aa11.07□□□□□ -0.64
TOPBP1-209ENST00000513818 TRAPPC10P48553 1259 aa11.07□□□□□ -0.64
TOPBP1-209ENST00000513818 NKX3-2P78367 333 aa11.07□□□□□ -0.64
TOPBP1-209ENST00000513818 PURAQ00577 322 aaKnown RBP11.07□□□□□ -0.64
TOPBP1-209ENST00000513818 NCAPH2Q6IBW4 605 aa11.07□□□□□ -0.64
TOPBP1-209ENST00000513818 BRAPQ7Z569 592 aa11.07□□□□□ -0.64
TOPBP1-209ENST00000513818 UBE2Q1Q7Z7E8 422 aa11.07□□□□□ -0.64
TOPBP1-209ENST00000513818 ANKLE1Q8NAG6 615 aa11.07□□□□□ -0.64
TOPBP1-209ENST00000513818 KAT2BQ92831 832 aa11.07□□□□□ -0.64
TOPBP1-209ENST00000513818 VTI1AQ96AJ9 217 aa11.07□□□□□ -0.64
TOPBP1-209ENST00000513818 PCYT2Q99447 389 aa11.07□□□□□ -0.64
TOPBP1-209ENST00000513818 NAP1L4Q99733 375 aaKnown RBP11.07□□□□□ -0.64
TOPBP1-209ENST00000513818 STARD7Q9NQZ5 370 aa11.07□□□□□ -0.64
TOPBP1-209ENST00000513818 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.07□□□□□ -0.64
TOPBP1-209ENST00000513818 PHF24Q9UPV7 400 aa11.07□□□□□ -0.64
TOPBP1-209ENST00000513818 CLIC4Q9Y696 253 aa11.07□□□□□ -0.64
TOPBP1-209ENST00000513818 TNRC18O15417 2968 aaPredicted RBP11.07□□□□□ -0.64
TOPBP1-209ENST00000513818 SCN10AQ9Y5Y9 1956 aa11.07□□□□□ -0.64
TOPBP1-209ENST00000513818 WDR81Q562E7 1941 aa11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 POTEMA6NI47 508 aa11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 EML1O00423 815 aa11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 RIOK3O14730 519 aaKnown RBP11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 MAFGO15525 162 aa11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 BRD1O95696 1058 aa11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 PTGDRQ13258 359 aa11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 UGCGQ16739 394 aa11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 DGKDQ16760 1214 aa11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 LRRC26Q2I0M4 334 aa11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 BRDTQ58F21 947 aaPredicted RBP11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 RILPL1Q5EBL4 403 aa11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 FAM47CQ5HY64 1035 aa11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 TRMT1LQ7Z2T5 733 aaKnown RBP11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 NECAB2Q7Z6G3 386 aa11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 CCDC60Q8IWA6 550 aaPredicted RBP11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 PCSK9Q8NBP7 692 aaKnown RBP11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 GIMAP8Q8ND71 665 aaPredicted RBP11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 GLT1D1Q96MS3 346 aa11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 MTMR9Q96QG7 549 aa11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 USP28Q96RU2 1077 aa11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 MTG1Q9BT17 334 aaPredicted RBP11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 TBC1D22BQ9NU19 505 aa11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 WDR70Q9NW82 654 aa11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 TCEAL9Q9UHQ7 104 aa11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 SAMM50Q9Y512 469 aa11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 GRIN2DO15399 1336 aa11.06□□□□□ -0.64
TOPBP1-209ENST00000513818 MOXD2PA6NHM9 499 aa11.05□□□□□ -0.64
TOPBP1-209ENST00000513818 PP2D1A8MPX8 630 aa11.05□□□□□ -0.64
TOPBP1-209ENST00000513818 WDR64B1ANS9 1081 aa11.05□□□□□ -0.64
TOPBP1-209ENST00000513818 BACH1O14867 736 aa11.05□□□□□ -0.64
TOPBP1-209ENST00000513818 ZEB2O60315 1214 aa11.05□□□□□ -0.64
TOPBP1-209ENST00000513818 GABBR2O75899 941 aa11.05□□□□□ -0.64
TOPBP1-209ENST00000513818 F2P00734 622 aa11.05□□□□□ -0.64
TOPBP1-209ENST00000513818 SUPT20HL2P0C7V6 817 aa11.05□□□□□ -0.64
TOPBP1-209ENST00000513818 HOXD8P13378 290 aaPredicted RBP11.05□□□□□ -0.64
TOPBP1-209ENST00000513818 DDIT3P35638 169 aa11.05□□□□□ -0.64
TOPBP1-209ENST00000513818 PSEN2P49810 448 aa11.05□□□□□ -0.64
TOPBP1-209ENST00000513818 KRT76Q01546 638 aa11.05□□□□□ -0.64
TOPBP1-209ENST00000513818 SPIRE1Q08AE8 756 aa11.05□□□□□ -0.64
TOPBP1-209ENST00000513818 MFSD10Q14728 455 aa11.05□□□□□ -0.64
TOPBP1-209ENST00000513818 SF3A1Q15459 793 aaKnown RBP11.05□□□□□ -0.64
TOPBP1-209ENST00000513818 IL17AQ16552 155 aa11.05□□□□□ -0.64
TOPBP1-209ENST00000513818 TRIM60Q495X7 471 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms