RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 RLFQ13129 1914 aa17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 CCDC151A5D8V7 595 aa17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 KRT9P35527 623 aa17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 OAZ1P54368 228 aa17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 TMEM132BQ14DG7 1078 aa17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 NONOQ15233 471 aaKnown RBP eCLIP17.84■□□□□ 0.452e-8■■■■□ 21.7
SQSTM1-213ENST00000510187 UBE2SQ16763 222 aa17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 WHAMMP3Q1A5X7 153 aa17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 COBLL1Q53SF7 1204 aa17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 ZNF569Q5MCW4 686 aa17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 BRI3BPQ8WY22 251 aa17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 DNAJC7Q99615 494 aa17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 NAPGQ99747 312 aaPredicted RBP17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 UBXN6Q9BZV1 441 aa17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 ARFGAP3Q9NP61 516 aa17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 TMEM260Q9NX78 707 aa17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 BICDL2A1A5D9 508 aa17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 OPLAHO14841 1288 aa17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 ALAS1P13196 640 aa17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 TTI2Q6NXR4 508 aa17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 USP17L6PQ6QN14 398 aa17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 ZNF662Q6ZS27 426 aa17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 FAM114A1Q8IWE2 563 aa17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 OR8K1Q8NGG5 319 aa17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 ZNF507Q8TCN5 953 aa17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 PARD6BQ9BYG5 372 aa17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 IRX2Q9BZI1 471 aaPredicted RBP17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 ZNF214Q9UL59 606 aaPredicted RBP17.84■□□□□ 0.45
SQSTM1-213ENST00000510187 BTBD19C9JJ37 291 aa17.83■□□□□ 0.44
SQSTM1-213ENST00000510187 TBC1D8O95759 1140 aa17.83■□□□□ 0.44
SQSTM1-213ENST00000510187 TUBBP07437 444 aa17.83■□□□□ 0.44
SQSTM1-213ENST00000510187 CDC25AP30304 524 aa17.83■□□□□ 0.44
SQSTM1-213ENST00000510187 ARHGAP25P42331 645 aa17.83■□□□□ 0.44
SQSTM1-213ENST00000510187 CLK2P49760 499 aaKnown RBP17.83■□□□□ 0.44
SQSTM1-213ENST00000510187 DNM2P50570 870 aa17.83■□□□□ 0.44
SQSTM1-213ENST00000510187 HERVK_113P62684 666 aa17.83■□□□□ 0.44
SQSTM1-213ENST00000510187 PLS1Q14651 629 aa17.83■□□□□ 0.44
SQSTM1-213ENST00000510187 SNRNP48Q6IEG0 339 aaKnown RBP17.83■□□□□ 0.44
SQSTM1-213ENST00000510187 LBX2Q6XYB7 198 aa17.83■□□□□ 0.44
SQSTM1-213ENST00000510187 CABP7Q86V35 215 aa17.83■□□□□ 0.44
SQSTM1-213ENST00000510187 RETREG2Q8NC44 543 aa17.83■□□□□ 0.44
SQSTM1-213ENST00000510187 ACRBPQ8NEB7 543 aa17.83■□□□□ 0.44
SQSTM1-213ENST00000510187 HNRNPLLQ8WVV9 542 aaKnown RBP17.83■□□□□ 0.44
SQSTM1-213ENST00000510187 TRIM47Q96LD4 638 aa17.83■□□□□ 0.44
SQSTM1-213ENST00000510187 C7orf25Q9BPX7 421 aa17.83■□□□□ 0.44
SQSTM1-213ENST00000510187 HOMER2Q9NSB8 354 aa17.83■□□□□ 0.44
SQSTM1-213ENST00000510187 ZHX1Q9UKY1 873 aaPredicted RBP17.83■□□□□ 0.44
SQSTM1-213ENST00000510187 PNMA3Q9UL41 463 aa17.83■□□□□ 0.44
SQSTM1-213ENST00000510187 CAPN11Q9UMQ6 739 aa17.83■□□□□ 0.44
SQSTM1-213ENST00000510187 PDHXO00330 501 aa17.82■□□□□ 0.44
SQSTM1-213ENST00000510187 MEIS2O14770 477 aa17.82■□□□□ 0.44
SQSTM1-213ENST00000510187 ATP2A1O14983 1001 aa17.82■□□□□ 0.44
SQSTM1-213ENST00000510187 AMPD3Q01432 767 aa17.82■□□□□ 0.44
SQSTM1-213ENST00000510187 SLC35F6Q8N357 371 aa17.82■□□□□ 0.44
SQSTM1-213ENST00000510187 MSANTD4Q8NCY6 345 aa17.82■□□□□ 0.44
SQSTM1-213ENST00000510187 IQCDQ96DY2 449 aa17.82■□□□□ 0.44
SQSTM1-213ENST00000510187 NUP58Q9BVL2 599 aa17.82■□□□□ 0.44
SQSTM1-213ENST00000510187 TEX13BQ9BXU2 312 aa17.82■□□□□ 0.44
SQSTM1-213ENST00000510187 SLC45A1Q9Y2W3 748 aa17.82■□□□□ 0.44
SQSTM1-213ENST00000510187 LUC7L2Q9Y383 392 aaKnown RBP17.82■□□□□ 0.44
SQSTM1-213ENST00000510187 PP2D1A8MPX8 630 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 COBLO75128 1261 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 CFBP00751 764 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 SLC10A3P09131 477 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 CCNE1P24864 410 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 STAT3P40763 770 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 TSR1Q2NL82 804 aaKnown RBP17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 POTEEQ6S8J3 1075 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 ANKRD23Q86SG2 305 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 NEK8Q86SG6 692 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 MSL3Q8N5Y2 521 aaKnown RBP17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 TRERF1Q96PN7 1200 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 RAB21Q9UL25 225 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 RIPK3Q9Y572 518 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 EPN1Q9Y6I3 576 aaPredicted RBP17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 TRIM49BA6NDI0 452 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 GCOM1H8Y6P7 765 aaPredicted RBP17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 RNF225M0QZC1 329 aaPredicted RBP17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 PIK3CDO00329 1044 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 NFIBO00712 420 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 NDUFA10O95299 355 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 POLR2MP0CAP2 368 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 CYP2C8P10632 490 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 PLCG1P19174 1290 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 HOXA13P31271 388 aaPredicted RBP17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 MEA1Q16626 185 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 TAF3Q5VWG9 929 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 MCF2L2Q86YR7 1114 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 CLEC4DQ8WXI8 215 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 P2RX5Q93086 422 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 CCDC102AQ96A19 550 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 PAGR1Q9BTK6 254 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 TRIM9Q9C026 710 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 HAUS4Q9H6D7 363 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 EXOC1Q9NV70 894 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 BTBD7Q9P203 1132 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 MAPK8IP1Q9UQF2 711 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 SMCHD1A6NHR9 2005 aa17.81■□□□□ 0.44
SQSTM1-213ENST00000510187 A0A0U1RQJ8 604 aa17.8■□□□□ 0.44
SQSTM1-213ENST00000510187 TTC26A0AVF1 554 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms