RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 EPHA5P54756 1037 aa5.58□□□□□ -1.52
HMGB1P28-201ENST00000507778 PRR5P85299 388 aa5.58□□□□□ -1.52
HMGB1P28-201ENST00000507778 EXOSC10Q01780 885 aaKnown RBP5.58□□□□□ -1.52
HMGB1P28-201ENST00000507778 TMEM62Q0P6H9 643 aa5.58□□□□□ -1.52
HMGB1P28-201ENST00000507778 TUSC3Q13454 348 aa5.58□□□□□ -1.52
HMGB1P28-201ENST00000507778 KCNMB1Q16558 191 aa5.58□□□□□ -1.52
HMGB1P28-201ENST00000507778 BTBD8Q5XKL5 378 aa5.58□□□□□ -1.52
HMGB1P28-201ENST00000507778 CREB3L3Q68CJ9 461 aa5.58□□□□□ -1.52
HMGB1P28-201ENST00000507778 RPTNQ6XPR3 784 aa5.58□□□□□ -1.52
HMGB1P28-201ENST00000507778 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.58□□□□□ -1.52
HMGB1P28-201ENST00000507778 NOSTRINQ8IVI9 506 aa5.58□□□□□ -1.52
HMGB1P28-201ENST00000507778 EFHBQ8N7U6 833 aa5.58□□□□□ -1.52
HMGB1P28-201ENST00000507778 CEP89Q96ST8 783 aa5.58□□□□□ -1.52
HMGB1P28-201ENST00000507778 PUS7LQ9H0K6 701 aaKnown RBP5.58□□□□□ -1.52
HMGB1P28-201ENST00000507778 EMC7Q9NPA0 242 aa5.58□□□□□ -1.52
HMGB1P28-201ENST00000507778 H2AFY2Q9P0M6 372 aaPredicted RBP5.58□□□□□ -1.52
HMGB1P28-201ENST00000507778 SPO11Q9Y5K1 396 aa5.58□□□□□ -1.52
HMGB1P28-201ENST00000507778 TCRBV5S2A0A599 114 aa5.57□□□□□ -1.52
HMGB1P28-201ENST00000507778 ABLIM1O14639 778 aa5.57□□□□□ -1.52
HMGB1P28-201ENST00000507778 ULK1O75385 1050 aa5.57□□□□□ -1.52
HMGB1P28-201ENST00000507778 LTFP02788 710 aa5.57□□□□□ -1.52
HMGB1P28-201ENST00000507778 MAPKAPK2P49137 400 aa5.57□□□□□ -1.52
HMGB1P28-201ENST00000507778 BRDTQ58F21 947 aaPredicted RBP5.57□□□□□ -1.52
HMGB1P28-201ENST00000507778 CPZQ66K79 652 aa5.57□□□□□ -1.52
HMGB1P28-201ENST00000507778 IQSEC1Q6DN90 963 aa5.57□□□□□ -1.52
HMGB1P28-201ENST00000507778 ZSWIM9Q86XI8 627 aa5.57□□□□□ -1.52
HMGB1P28-201ENST00000507778 KIAA1958Q8N8K9 716 aa5.57□□□□□ -1.52
HMGB1P28-201ENST00000507778 CLEC4DQ8WXI8 215 aa5.57□□□□□ -1.52
HMGB1P28-201ENST00000507778 DLG3Q92796 817 aa5.57□□□□□ -1.52
HMGB1P28-201ENST00000507778 PDGFDQ9GZP0 370 aaPredicted RBP5.57□□□□□ -1.52
HMGB1P28-201ENST00000507778 PCIF1Q9H4Z3 704 aa5.57□□□□□ -1.52
HMGB1P28-201ENST00000507778 ACSS2Q9NR19 701 aa5.57□□□□□ -1.52
HMGB1P28-201ENST00000507778 KCNH7Q9NS40 1196 aa5.57□□□□□ -1.52
HMGB1P28-201ENST00000507778 RIC8BQ9NVN3 520 aa5.57□□□□□ -1.52
HMGB1P28-201ENST00000507778 KLHL14Q9P2G3 628 aa5.57□□□□□ -1.52
HMGB1P28-201ENST00000507778 TELO2Q9Y4R8 837 aa5.57□□□□□ -1.52
HMGB1P28-201ENST00000507778 B3GALT1Q9Y5Z6 326 aa5.57□□□□□ -1.52
HMGB1P28-201ENST00000507778 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.56□□□□□ -1.52
HMGB1P28-201ENST00000507778 FAM90A27PA6NNH2 459 aa5.56□□□□□ -1.52
HMGB1P28-201ENST00000507778 DVL2O14641 736 aa5.56□□□□□ -1.52
HMGB1P28-201ENST00000507778 BUB1BO60566 1050 aaPredicted RBP5.56□□□□□ -1.52
HMGB1P28-201ENST00000507778 PTPN1P18031 435 aaKnown RBP5.56□□□□□ -1.52
HMGB1P28-201ENST00000507778 SLC9A1P19634 815 aa5.56□□□□□ -1.52
HMGB1P28-201ENST00000507778 KIF11P52732 1056 aa5.56□□□□□ -1.52
HMGB1P28-201ENST00000507778 YBX1P67809 324 aaKnown RBP5.56□□□□□ -1.52
HMGB1P28-201ENST00000507778 FAPQ12884 760 aa5.56□□□□□ -1.52
HMGB1P28-201ENST00000507778 SEC23AQ15436 765 aa5.56□□□□□ -1.52
HMGB1P28-201ENST00000507778 PLEKHG6Q3KR16 790 aa5.56□□□□□ -1.52
HMGB1P28-201ENST00000507778 FSTL4Q6MZW2 842 aa5.56□□□□□ -1.52
HMGB1P28-201ENST00000507778 CC2D1AQ6P1N0 951 aaPredicted RBP5.56□□□□□ -1.52
HMGB1P28-201ENST00000507778 ZC3H14Q6PJT7 736 aaKnown RBP5.56□□□□□ -1.52
HMGB1P28-201ENST00000507778 IRF2BP1Q8IU81 584 aa5.56□□□□□ -1.52
HMGB1P28-201ENST00000507778 ARRDC4Q8NCT1 418 aa5.56□□□□□ -1.52
HMGB1P28-201ENST00000507778 TSPAN17Q96FV3 270 aa5.56□□□□□ -1.52
HMGB1P28-201ENST00000507778 ELF4Q99607 663 aaPredicted RBP5.56□□□□□ -1.52
HMGB1P28-201ENST00000507778 IRF2BPLQ9H1B7 796 aa5.56□□□□□ -1.52
HMGB1P28-201ENST00000507778 METTL14Q9HCE5 456 aaKnown RBP5.56□□□□□ -1.52
HMGB1P28-201ENST00000507778 TOMM22Q9NS69 142 aa5.56□□□□□ -1.52
HMGB1P28-201ENST00000507778 TGM5O43548 720 aa5.55□□□□□ -1.52
HMGB1P28-201ENST00000507778 KATNA1O75449 491 aa5.55□□□□□ -1.52
HMGB1P28-201ENST00000507778 CYP17A1P05093 508 aa5.55□□□□□ -1.52
HMGB1P28-201ENST00000507778 SESN3P58005 492 aa5.55□□□□□ -1.52
HMGB1P28-201ENST00000507778 GRIN1Q05586 938 aa5.55□□□□□ -1.52
HMGB1P28-201ENST00000507778 ITKQ08881 620 aa5.55□□□□□ -1.52
HMGB1P28-201ENST00000507778 TMEM132BQ14DG7 1078 aa5.55□□□□□ -1.52
HMGB1P28-201ENST00000507778 PLEKHN1Q494U1 663 aaPredicted RBP5.55□□□□□ -1.52
HMGB1P28-201ENST00000507778 OLFML2BQ68BL8 750 aa5.55□□□□□ -1.52
HMGB1P28-201ENST00000507778 HDGFL2Q7Z4V5 671 aaPredicted RBP5.55□□□□□ -1.52
HMGB1P28-201ENST00000507778 TTLL11Q8NHH1 800 aa5.55□□□□□ -1.52
HMGB1P28-201ENST00000507778 SLC5A5Q92911 643 aa5.55□□□□□ -1.52
HMGB1P28-201ENST00000507778 YIPF4Q9BSR8 244 aa5.55□□□□□ -1.52
HMGB1P28-201ENST00000507778 HCFC2Q9Y5Z7 792 aa5.55□□□□□ -1.52
HMGB1P28-201ENST00000507778 PRAMEF25A6NGN4 478 aa5.54□□□□□ -1.52
HMGB1P28-201ENST00000507778 HRKO00198 91 aa5.54□□□□□ -1.52
HMGB1P28-201ENST00000507778 C4BPAP04003 597 aaKnown RBP5.54□□□□□ -1.52
HMGB1P28-201ENST00000507778 S100BP04271 92 aaPredicted RBP5.54□□□□□ -1.52
HMGB1P28-201ENST00000507778 LSP1P33241 339 aa5.54□□□□□ -1.52
HMGB1P28-201ENST00000507778 SMAD3P84022 425 aaKnown RBP5.54□□□□□ -1.52
HMGB1P28-201ENST00000507778 MTMR1Q13613 665 aa5.54□□□□□ -1.52
HMGB1P28-201ENST00000507778 TERF2Q15554 542 aa5.54□□□□□ -1.52
HMGB1P28-201ENST00000507778 SMAD2Q15796 467 aaKnown RBP5.54□□□□□ -1.52
HMGB1P28-201ENST00000507778 DDB1Q16531 1140 aa5.54□□□□□ -1.52
HMGB1P28-201ENST00000507778 PAN2Q504Q3 1202 aaKnown RBP5.54□□□□□ -1.52
HMGB1P28-201ENST00000507778 GPR158Q5T848 1215 aa5.54□□□□□ -1.52
HMGB1P28-201ENST00000507778 BROXQ5VW32 411 aa5.54□□□□□ -1.52
HMGB1P28-201ENST00000507778 CNTD1Q8N815 330 aa5.54□□□□□ -1.52
HMGB1P28-201ENST00000507778 COG1Q8WTW3 980 aa5.54□□□□□ -1.52
HMGB1P28-201ENST00000507778 ALG3Q92685 438 aa5.54□□□□□ -1.52
HMGB1P28-201ENST00000507778 BCAS3Q9H6U6 928 aa5.54□□□□□ -1.52
HMGB1P28-201ENST00000507778 ZNF552Q9H707 407 aaPredicted RBP5.54□□□□□ -1.52
HMGB1P28-201ENST00000507778 ACOT7O00154 380 aa5.53□□□□□ -1.52
HMGB1P28-201ENST00000507778 PRKD3O94806 890 aa5.53□□□□□ -1.52
HMGB1P28-201ENST00000507778 PAPLNO95428 1278 aa5.53□□□□□ -1.52
HMGB1P28-201ENST00000507778 FAHP16930 419 aa5.53□□□□□ -1.52
HMGB1P28-201ENST00000507778 SDHAP31040 664 aa5.53□□□□□ -1.52
HMGB1P28-201ENST00000507778 PHC1P78364 1004 aa5.53□□□□□ -1.52
HMGB1P28-201ENST00000507778 MPZL3Q6UWV2 235 aa5.53□□□□□ -1.52
HMGB1P28-201ENST00000507778 TMC6Q7Z403 805 aa5.53□□□□□ -1.52
HMGB1P28-201ENST00000507778 MIB1Q86YT6 1006 aa5.53□□□□□ -1.52
HMGB1P28-201ENST00000507778 FAM126BQ8IXS8 530 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms