RNA–Protein interactions for RNA: ENST00000498724.5

TNC-208, Transcript of tenascin C, human

TSL 2

Gene TNC, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TNC-208	ENST00000498724	FAM205A	Q6ZU69	1335 aa		4.91	□□□□□ -1.62
TNC-208	ENST00000498724	MYH14	Q7Z406	1995 aa	Known RBP	4.91	□□□□□ -1.62
TNC-208	ENST00000498724	CIC	Q96RK0	1608 aa	Predicted RBP	4.9	□□□□□ -1.62
TNC-208	ENST00000498724	TSPY2	A6NKD2	308 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	LRRC53	A6NM62	1247 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	SRRM3	A6NNA2	597 aa	Predicted RBP	4.9	□□□□□ -1.63
TNC-208	ENST00000498724	SMIM22	K7EJ46	135 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	MYO1F	O00160	1098 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	SNAP23	O00161	211 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	SMAP	O00193	183 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	POLRMT	O00411	1230 aa	Known RBP	4.9	□□□□□ -1.63
TNC-208	ENST00000498724	CHUK	O15111	745 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	HR	O43593	1189 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	FGR	P09769	529 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	CYP19A1	P11511	503 aa	Predicted RBP	4.9	□□□□□ -1.63
TNC-208	ENST00000498724	HOXA7	P31268	230 aa	Predicted RBP	4.9	□□□□□ -1.63
TNC-208	ENST00000498724	CXCR5	P32302	372 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	LSP1	P33241	339 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	MDH1	P40925	334 aa	Known RBP	4.9	□□□□□ -1.63
TNC-208	ENST00000498724	PRPH	P41219	470 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	SLC1A4	P43007	532 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	FNTA	P49354	379 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	GUCY2F	P51841	1108 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	CDR1	P51861	262 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	GSC	P56915	257 aa	Predicted RBP	4.9	□□□□□ -1.63
TNC-208	ENST00000498724	GUCY2D	Q02846	1103 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	ACTN3	Q08043	901 aa	Predicted RBP	4.9	□□□□□ -1.63
TNC-208	ENST00000498724	DRP2	Q13474	957 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	GRM4	Q14833	912 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	INF2	Q27J81	1249 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	COBLL1	Q53SF7	1204 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	TDRD12	Q587J7	1177 aa	Known RBP	4.9	□□□□□ -1.63
TNC-208	ENST00000498724	FAM47A	Q5JRC9	791 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	KCTD16	Q68DU8	428 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	PPP4R3A	Q6IN85	833 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	POTEE	Q6S8J3	1075 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	LRIG3	Q6UXM1	1119 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	CCDC121	Q6ZUS5	278 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	SAMD7	Q7Z3H4	446 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	KRT25	Q7Z3Z0	450 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	YTHDF3	Q7Z739	585 aa	Known RBP	4.9	□□□□□ -1.63
TNC-208	ENST00000498724	ADGRA1	Q86SQ6	560 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	RPAIN	Q86UA6	219 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	CCDC84	Q86UT8	332 aa	Predicted RBP	4.9	□□□□□ -1.63
TNC-208	ENST00000498724	ZNF34	Q8IZ26	560 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	RNF10	Q8N5U6	811 aa	Known RBP	4.9	□□□□□ -1.63
TNC-208	ENST00000498724	DAGLB	Q8NCG7	672 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	C1orf131	Q8NDD1	294 aa	Known RBP	4.9	□□□□□ -1.63
TNC-208	ENST00000498724	RASGRP4	Q8TDF6	673 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	CASKIN2	Q8WXE0	1202 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	IFT81	Q8WYA0	676 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	CALML4	Q96GE6	196 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	ATP6V1G3	Q96LB4	118 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	AK8	Q96MA6	479 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	RIOK1	Q9BRS2	568 aa	Known RBP	4.9	□□□□□ -1.63
TNC-208	ENST00000498724	TACO1	Q9BSH4	297 aa	Known RBP	4.9	□□□□□ -1.63
TNC-208	ENST00000498724	BEGAIN	Q9BUH8	593 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	TLR10	Q9BXR5	811 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	CRNKL1	Q9BZJ0	848 aa	Known RBP	4.9	□□□□□ -1.63
TNC-208	ENST00000498724	EDEM3	Q9BZQ6	932 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	TRIM9	Q9C026	710 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	TANGO6	Q9C0B7	1094 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	NUCKS1	Q9H1E3	243 aa	Known RBP	4.9	□□□□□ -1.63
TNC-208	ENST00000498724	TMEM60	Q9H2L4	133 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	NDST4	Q9H3R1	872 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	CXorf56	Q9H5V9	222 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	VCPKMT	Q9H867	229 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	EPB41L5	Q9HCM4	733 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	A1CF	Q9NQ94	594 aa	Known RBP	4.9	□□□□□ -1.63
TNC-208	ENST00000498724	FAM207A	Q9NSI2	230 aa	Predicted RBP	4.9	□□□□□ -1.63
TNC-208	ENST00000498724	RBM12	Q9NTZ6	932 aa	Known RBP	4.9	□□□□□ -1.63
TNC-208	ENST00000498724	EHD2	Q9NZN4	543 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	ARHGAP20	Q9P2F6	1191 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	ARPP21	Q9UBL0	812 aa	Predicted RBP	4.9	□□□□□ -1.63
TNC-208	ENST00000498724	FAM198A	Q9UFP1	575 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	TSR3	Q9UJK0	312 aa	Known RBP	4.9	□□□□□ -1.63
TNC-208	ENST00000498724	GGA2	Q9UJY4	613 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	NFU1	Q9UMS0	254 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	PCDHA6	Q9UN73	950 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	PLAGL2	Q9UPG8	496 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	PLAA	Q9Y263	795 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	SIK3	Q9Y2K2	1263 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	PCDHA8	Q9Y5H6	950 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	ABCB11	O95342	1321 aa		4.9	□□□□□ -1.63
TNC-208	ENST00000498724	SSU72P8	A0A1W2PR75	194 aa		4.89	□□□□□ -1.63
TNC-208	ENST00000498724	POTEB3	A0JP26	581 aa		4.89	□□□□□ -1.63
TNC-208	ENST00000498724	SOWAHB	A6NEL2	793 aa		4.89	□□□□□ -1.63
TNC-208	ENST00000498724	ZNF233	A6NK53	670 aa		4.89	□□□□□ -1.63
TNC-208	ENST00000498724	USP17L12	C9JPN9	530 aa		4.89	□□□□□ -1.63
TNC-208	ENST00000498724	USP17L21	D6R901	530 aa		4.89	□□□□□ -1.63
TNC-208	ENST00000498724		E7EVH7	732 aa		4.89	□□□□□ -1.63
TNC-208	ENST00000498724		H0YIN7	160 aa		4.89	□□□□□ -1.63
TNC-208	ENST00000498724	GCOM1	H8Y6P7	765 aa	Predicted RBP	4.89	□□□□□ -1.63
TNC-208	ENST00000498724	ADAMTS3	O15072	1205 aa		4.89	□□□□□ -1.63
TNC-208	ENST00000498724	BUB1	O43683	1085 aa		4.89	□□□□□ -1.63
TNC-208	ENST00000498724	NMT2	O60551	498 aa		4.89	□□□□□ -1.63
TNC-208	ENST00000498724	PALM	O75781	387 aa		4.89	□□□□□ -1.63
TNC-208	ENST00000498724	FAM107A	O95990	144 aa		4.89	□□□□□ -1.63
TNC-208	ENST00000498724	SERPINB2	P05120	415 aa		4.89	□□□□□ -1.63
TNC-208	ENST00000498724	SERPING1	P05155	500 aa		4.89	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms