RNA–Protein interactions for RNA: ENST00000498090.1

AFF3-215, Transcript of AF4/FMR2 family member 3, human

TSL 2

Gene AFF3, Length 1,673 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
AFF3-215	ENST00000498090	BEND6	Q5SZJ8	279 aa	Predicted RBP	13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	LDLRAD1	Q5T700	205 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	CENPP	Q6IPU0	288 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	ARMC9	Q7Z3E5	817 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	KIAA1328	Q86T90	577 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	ANKRD13A	Q8IZ07	590 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	CHP1	Q99653	195 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	NOC4L	Q9BVI4	516 aa	Known RBP	13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	EDEM3	Q9BZQ6	932 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	GLT8D2	Q9H1C3	349 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	SH2D4A	Q9H788	454 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	GOPC	Q9HD26	462 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	REXO2	Q9Y3B8	237 aa	Known RBP	13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	CSAD	Q9Y600	493 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	ZHX2	Q9Y6X8	837 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	TARSL2	A2RTX5	802 aa	Known RBP	13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	COBL	O75128	1261 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	CELF2	O95319	508 aa	Known RBP	13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	OAS2	P29728	719 aa	Known RBP	13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	TEC	P42680	631 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	MAP9	Q49MG5	647 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	CCDC122	Q5T0U0	273 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	GPATCH4	Q5T3I0	446 aa	Known RBP	13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	ANKRD40	Q6AI12	368 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	PPP4R3A	Q6IN85	833 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	WDR59	Q6PJI9	974 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	GUF1	Q8N442	669 aa	Known RBP	13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	ZNF280C	Q8ND82	737 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	CDK5RAP3	Q96JB5	506 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	AS3MT	Q9HBK9	375 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	RIC8A	Q9NPQ8	531 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	EMILIN3	Q9NT22	766 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	LRWD1	Q9UFC0	647 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	GUCA1B	Q9UMX6	200 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	AFG3L2	Q9Y4W6	797 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	SAR1B	Q9Y6B6	198 aa		13.79	□□□□□ -0.2
AFF3-215	ENST00000498090	USP17L10	C9JJH3	530 aa		13.78	□□□□□ -0.2
AFF3-215	ENST00000498090	MYCN	P04198	464 aa	Predicted RBP	13.78	□□□□□ -0.2
AFF3-215	ENST00000498090	BMP3	P12645	472 aa		13.78	□□□□□ -0.2
AFF3-215	ENST00000498090	GCFC2	P16383	781 aa	Known RBP	13.78	□□□□□ -0.2
AFF3-215	ENST00000498090	SLC16A2	P36021	539 aa		13.78	□□□□□ -0.2
AFF3-215	ENST00000498090	SPA17	Q15506	151 aa		13.78	□□□□□ -0.2
AFF3-215	ENST00000498090	FAM83B	Q5T0W9	1011 aa		13.78	□□□□□ -0.2
AFF3-215	ENST00000498090	LARP4B	Q92615	738 aa	Known RBP	13.78	□□□□□ -0.2
AFF3-215	ENST00000498090	RUBCN	Q92622	972 aa		13.78	□□□□□ -0.2
AFF3-215	ENST00000498090	EXOC4	Q96A65	974 aa		13.78	□□□□□ -0.2
AFF3-215	ENST00000498090	JAKMIP2	Q96AA8	810 aa		13.78	□□□□□ -0.2
AFF3-215	ENST00000498090	PIGS	Q96S52	555 aa		13.78	□□□□□ -0.2
AFF3-215	ENST00000498090	MMTAG2	Q9BU76	263 aa	Known RBP	13.78	□□□□□ -0.2
AFF3-215	ENST00000498090	EPC1	Q9H2F5	836 aa		13.78	□□□□□ -0.2
AFF3-215	ENST00000498090	VIPAS39	Q9H9C1	493 aa		13.78	□□□□□ -0.2
AFF3-215	ENST00000498090	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	13.78	□□□□□ -0.2
AFF3-215	ENST00000498090	L1RE1	Q9UN81	338 aa		13.78	□□□□□ -0.2
AFF3-215	ENST00000498090		A0A0U1RQJ8	604 aa		13.77	□□□□□ -0.21
AFF3-215	ENST00000498090	SPDYE5	A6NIY4	337 aa		13.77	□□□□□ -0.21
AFF3-215	ENST00000498090	USO1	O60763	962 aa	Known RBP	13.77	□□□□□ -0.21
AFF3-215	ENST00000498090	APLP1	P51693	650 aa		13.77	□□□□□ -0.21
AFF3-215	ENST00000498090	BACE1	P56817	501 aa		13.77	□□□□□ -0.21
AFF3-215	ENST00000498090	HERVK_113	P62684	666 aa		13.77	□□□□□ -0.21
AFF3-215	ENST00000498090	KIF5A	Q12840	1032 aa		13.77	□□□□□ -0.21
AFF3-215	ENST00000498090	STK4	Q13043	487 aa		13.77	□□□□□ -0.21
AFF3-215	ENST00000498090	CST9	Q5W186	159 aa		13.77	□□□□□ -0.21
AFF3-215	ENST00000498090	KRT79	Q5XKE5	535 aa		13.77	□□□□□ -0.21
AFF3-215	ENST00000498090	ATRIP	Q8WXE1	791 aa		13.77	□□□□□ -0.21
AFF3-215	ENST00000498090	PURB	Q96QR8	312 aa	Known RBP	13.77	□□□□□ -0.21
AFF3-215	ENST00000498090	TSG101	Q99816	390 aa		13.77	□□□□□ -0.21
AFF3-215	ENST00000498090	GBA2	Q9HCG7	927 aa	Predicted RBP	13.77	□□□□□ -0.21
AFF3-215	ENST00000498090	ST7	Q9NRC1	585 aa		13.77	□□□□□ -0.21
AFF3-215	ENST00000498090	PNMA6F	A0A0J9YX94	578 aa		13.76	□□□□□ -0.21
AFF3-215	ENST00000498090	GJA5	P36382	358 aa		13.76	□□□□□ -0.21
AFF3-215	ENST00000498090	VAV2	P52735	878 aa		13.76	□□□□□ -0.21
AFF3-215	ENST00000498090	MAN2A1	Q16706	1144 aa		13.76	□□□□□ -0.21
AFF3-215	ENST00000498090	VWA3B	Q502W6	1294 aa		13.76	□□□□□ -0.21
AFF3-215	ENST00000498090	MIIP	Q5JXC2	388 aa		13.76	□□□□□ -0.21
AFF3-215	ENST00000498090	BTNL9	Q6UXG8	535 aa		13.76	□□□□□ -0.21
AFF3-215	ENST00000498090	ADGRF4	Q8IZF3	695 aa		13.76	□□□□□ -0.21
AFF3-215	ENST00000498090	MTMR8	Q96EF0	704 aa		13.76	□□□□□ -0.21
AFF3-215	ENST00000498090	OTUD5	Q96G74	571 aa		13.76	□□□□□ -0.21
AFF3-215	ENST00000498090	C12orf42	Q96LP6	360 aa		13.76	□□□□□ -0.21
AFF3-215	ENST00000498090	PCMTD1	Q96MG8	357 aa	Predicted RBP	13.76	□□□□□ -0.21
AFF3-215	ENST00000498090	PLIN2	Q99541	437 aa		13.76	□□□□□ -0.21
AFF3-215	ENST00000498090	NUCKS1	Q9H1E3	243 aa	Known RBP	13.76	□□□□□ -0.21
AFF3-215	ENST00000498090	ZSWIM4	Q9H7M6	989 aa		13.76	□□□□□ -0.21
AFF3-215	ENST00000498090	JMJD4	Q9H9V9	463 aa		13.76	□□□□□ -0.21
AFF3-215	ENST00000498090	PLAGL2	Q9UPG8	496 aa		13.76	□□□□□ -0.21
AFF3-215	ENST00000498090	KDM3A	Q9Y4C1	1321 aa		13.76	□□□□□ -0.21
AFF3-215	ENST00000498090	WDR46	O15213	610 aa	Known RBP	13.75	□□□□□ -0.21
AFF3-215	ENST00000498090	PRLR	P16471	622 aa		13.75	□□□□□ -0.21
AFF3-215	ENST00000498090	VCAM1	P19320	739 aa		13.75	□□□□□ -0.21
AFF3-215	ENST00000498090	TXK	P42681	527 aa		13.75	□□□□□ -0.21
AFF3-215	ENST00000498090	MRPL12	P52815	198 aa	Known RBP	13.75	□□□□□ -0.21
AFF3-215	ENST00000498090	HMGCS2	P54868	508 aa		13.75	□□□□□ -0.21
AFF3-215	ENST00000498090	FKBP1B	P68106	108 aa		13.75	□□□□□ -0.21
AFF3-215	ENST00000498090	ITIH3	Q06033	890 aa		13.75	□□□□□ -0.21
AFF3-215	ENST00000498090	GRB10	Q13322	594 aa		13.75	□□□□□ -0.21
AFF3-215	ENST00000498090	MCTP2	Q6DN12	878 aa		13.75	□□□□□ -0.21
AFF3-215	ENST00000498090	CCDC70	Q6NSX1	233 aa		13.75	□□□□□ -0.21
AFF3-215	ENST00000498090	ERO1B	Q86YB8	467 aa		13.75	□□□□□ -0.21
AFF3-215	ENST00000498090	TRIM58	Q8NG06	486 aa		13.75	□□□□□ -0.21

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